TCONS_00001770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001770
Unique NameTCONS_00001770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001770 ID=TCONS_00001770|Name=TCONS_00001770|organism=Clytia hemisphaerica|type=transcript|length=727bp
AAATAGCAGTGCAGAAATGACCATTACAATCATATTCAATTCTTTAACTT
TGATTAACACATACTAACTAAACCTTAGAGATAAATCTGAACCTTACAAG
AATCATCCTAACGAAGAAAGCATACCGACCGAACAAAACAACATCGACAA
GAGCAACACAAACTATACACAATAATGATTAAAATATTGGTATTGACATT
AGTTCTTCTAGCTATCGAACAGGTCAACGGATTATCGATATTAGGAACAT
GTCAAGAATATGATTGCTACAATGCACCACTTGACTGCCAAGGACGTGGC
TCATACCTGACCGAGGTTACTGGAAATTGTTGTTCCGCATGTTATAAAGC
AGCGGGTGAACCGTGTGGCGGAATACACGACCATTTGGGAATTTGTGGTG
GAAAATTGACATGCGTGAGTAATCCTGGCCAAGAGCATTTGTTACCAGTC
AACAAACCTACTGGTGTCTGCCGAAGAAGGACTGCGCCACCAAAAACCAA
ACTTCCAAAGAAATGGGAAAAATTGATGCAAAGTGGACGAGTGACCAACA
AGTTGAGATCAGAATTAAGCAAATTATTTAAAAAAATCAAGACGTTGAAT
ACTTCagtatttcattaaaaaaacagaCGATCGAAAGGTTAATTTTTGCA
CCACATTTTTCTTAATTGTAAATAGATTAATtttagaaattaaagaaaaa
ccaGAAAATTCAGCTGAAAACTGTGCC
Run BLAST on NCBI

protein sequence of TCONS_00001770-protein

>TCONS_00001770-protein ID=TCONS_00001770-protein|Name=TCONS_00001770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MIKILVLTLVLLAIEQVNGLSILGTCQEYDCYNAPLDCQGRGSYLTEVTG
NCCSACYKAAGEPCGGIHDHLGICGGKLTCVSNPGQEHLLPVNKPTGVCR
RRTAPPKTKLPKKWEKLMQSGRVTNKLRSELSKLFKKIKTLNTSVFH
Run BLAST on NCBI

transcript from alignment at sc0000012:198885..200687+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001770 ID=TCONS_00001770|Name=TCONS_00001770|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at sc0000012:198885..200687+ (Clytia hemisphaerica)
AAATAGCAGTGCAGAAATGACCATTACAATCATATTCAATTCTTTAACTT TGATTAACACATACTAACTAAACCTTAGAGATAAATCTGAACCTTACAAG AATCATCCTAACGAAGAAAGCATACCGACCGAACAAAACAACATCGACAA GAGCAACACAAACTATACACAATAATGATTAAAATATTGGTATTGACATT AGTTCTTCTAGCTATCGAACAGGTCAACGGATTATCGATATTAGGAACAT GTCAAGAATATGATTGCTACAATGCACCACTTGACTGCCAAGGTAAAGca catttctttttcattttatgtcgatttaatcatttttgtacaaaaatact TGATTTAAAATAGCCAAGCTAAAGTTTCTGCTTACAATAAGGTCAAGTTT TTTTCGTTTTGAAATGTCGCATTGTAATAGTCCGTGTAATTTCATCTGGA TAATGTTTTTTACGAGTAGTTTATCATTATAGATAAGGTTTATACTTAGT AGTCGTTAACGATTATCGGATTATCTAAATAAAACTGGACGGACTAAAGT AGGGCAAACTCCTTTGAAGTGTGCGATTTCTACATGTTAACTGCACTTTC TTTTACTTCTACACAGGACGTGGCTCATACCTGACCGAGGTTACTGGAAA TTGTTGTTCCGCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAATAC ACGACCATTTGGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATCCT GGCCAAGAGCATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGTAA GTATAAATATAATAAGCCCTCTTACTTCAATGGCTACGATATAGCTatca taatttctttttaaaaaactctCCGACAAAGTTGAAGTCGACAGACTTAA AACTTTTGCTTTTTGGCTGAATCTAACCTTTCGTAATAACATGAATAGTT TGATTCTACCAACAAATGCTAGGTATGCGAAGGTAATCACGGATGCTTAA AGTGCGTGCTTCAAATATAGTCTTATCTCATTCCTGACATTGCTTTAATT AGATTCGTAGATTTCGCAACTATGTAAAAACGAAATGGCGAAGTATTTCC TCAACGTGTTGTTCGTAAATCTATAAGAGACTATCATTACATCACACAAC TCTATTTTGTAACTAAAACAAAATCCCACAATTCTTTGCAAGCAGTTAGA AGATCTTCTCCTTACGCTTATTCAATTTCTGAAACTCAATCTGATggttt cgttaattttttccttctatttctcttctctttttgtAGGAAGAAGGACT GCGCCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCAAAG TGGACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTAAAA GTAAGTCACTTACCTTATGATTTTTGTTGCAATAGAAAACACGATGTATA CTGCCTTAATAATATATCTGCTTGGAATGGTAGATGTCTGTCTGGTTTAA TGATTTACTTTCTATGGTGAAAGTTTTTAATCTAAGAATATGTCTACAAG TGCATTCCTCTCTGGAGCAAGGATTTAAGAAATTTGTCAATGAATTcgtt caaaattaaaattttgagttttgaattGATATAACCTTgataattatttt gttttatagAAATCAAGACGTTGAATACTTCagtatttcattaaaaaaac agaCGATCGAAAGGTTAATTTTTGCACCACATTTTTCTTAATTGTAAATA GATTAATtttagaaattaaagaaaaaccaGAAAATTCAGCTGAAAACTGT GCC

Coding sequence (CDS) from alignment at sc0000012:198885..200687+

>TCONS_00001770 ID=TCONS_00001770|Name=TCONS_00001770|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000012:198885..200687+ (Clytia hemisphaerica)
ATGATTAAAATATTGGTATTGACATTAGTTCTTCTAGCTATCGAACAGGT
CAACGGATTATCGATATTAGGAACATGTCAAGAATATGATTGCTACAATG
CACCACTTGACTGCCAAGGACGTGGCTCATACCTGACCGAGGTTACTGGA
AATTGTTGTTCCGCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAAT
ACACGACCATTTGGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATC
CTGGCCAAGAGCATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGA
AGAAGGACTGCGCCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATT
GATGCAAAGTGGACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAAT
TATTTAAAAAAATCAAGACGTTGAATACTTCagtatttcattaaATGATT
AAAATATTGGTATTGACATTAGTTCTTCTAGCTATCGAACAGGTCAACGG
ATTATCGATATTAGGAACATGTCAAGAATATGATTGCTACAATGCACCAC
TTGACTGCCAAGGACGTGGCTCATACCTGACCGAGGTTACTGGAAATTGT
TGTTCCGCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAATACACGA
CCATTTGGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATCCTGGCC
AAGAGCATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGAAGAAGG
ACTGCGCCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCA
AAGTGGACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTA
AAAAAATCAAGACGTTGAATACTTCagtatttcattaaATGATTAAAATA
TTGGTATTGACATTAGTTCTTCTAGCTATCGAACAGGTCAACGGATTATC
GATATTAGGAACATGTCAAGAATATGATTGCTACAATGCACCACTTGACT
GCCAAGGACGTGGCTCATACCTGACCGAGGTTACTGGAAATTGTTGTTCC
GCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAATACACGACCATTT
GGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATCCTGGCCAAGAGC
ATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGAAGAAGGACTGCG
CCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCAAAGTGG
ACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTAAAAAAA
TCAAGACGTTGAATACTTCagtatttcattaaATGATTAAAATATTGGTA
TTGACATTAGTTCTTCTAGCTATCGAACAGGTCAACGGATTATCGATATT
AGGAACATGTCAAGAATATGATTGCTACAATGCACCACTTGACTGCCAAG
GACGTGGCTCATACCTGACCGAGGTTACTGGAAATTGTTGTTCCGCATGT
TATAAAGCAGCGGGTGAACCGTGTGGCGGAATACACGACCATTTGGGAAT
TTGTGGTGGAAAATTGACATGCGTGAGTAATCCTGGCCAAGAGCATTTGT
TACCAGTCAACAAACCTACTGGTGTCTGCCGAAGAAGGACTGCGCCACCA
AAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCAAAGTGGACGAGT
GACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTAAAAAAATCAAGA
CGTTGAATACTTCagtatttcattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000949XLOC_000949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001770-exon-sc0000012-1491911889:198885..199176TCONS_00001770-exon-sc0000012-1491911889:198885..199176Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1510915933:198885..199176TCONS_00001770-exon-sc0000012-1510915933:198885..199176Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1575043694:198885..199176TCONS_00001770-exon-sc0000012-1575043694:198885..199176Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1491911889:199501..199680TCONS_00001770-exon-sc0000012-1491911889:199501..199680Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1510915933:199501..199680TCONS_00001770-exon-sc0000012-1510915933:199501..199680Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1575043694:199501..199680TCONS_00001770-exon-sc0000012-1575043694:199501..199680Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1491911889:200174..200284TCONS_00001770-exon-sc0000012-1491911889:200174..200284Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1510915933:200174..200284TCONS_00001770-exon-sc0000012-1510915933:200174..200284Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1575043694:200174..200284TCONS_00001770-exon-sc0000012-1575043694:200174..200284Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1491911889:200544..200687TCONS_00001770-exon-sc0000012-1491911889:200544..200687Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1510915933:200544..200687TCONS_00001770-exon-sc0000012-1510915933:200544..200687Clytia hemisphaericaexon
TCONS_00001770-exon-sc0000012-1575043694:200544..200687TCONS_00001770-exon-sc0000012-1575043694:200544..200687Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001770-proteinTCONS_00001770-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:198885..200687 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.155095 0.0758683 0.184725 0.291944 0 0 0.11543 0.142979 0 0.182455 5.01055 2.31792 43.5188 73.2046 0.154245 0.158096 0.0728062 0.0761865 0.331099 0.290698 0.0785291 0.0713944 0.220604 0 0 0.400907 0 0.0774507
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009030Growth_fac_rcpt_
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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