|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001770 ID=TCONS_00001770|Name=TCONS_00001770|organism=Clytia hemisphaerica|type=transcript|length=727bp
AAATAGCAGTGCAGAAATGACCATTACAATCATATTCAATTCTTTAACTT
TGATTAACACATACTAACTAAACCTTAGAGATAAATCTGAACCTTACAAG
AATCATCCTAACGAAGAAAGCATACCGACCGAACAAAACAACATCGACAA
GAGCAACACAAACTATACACAATAATGATTAAAATATTGGTATTGACATT
AGTTCTTCTAGCTATCGAACAGGTCAACGGATTATCGATATTAGGAACAT
GTCAAGAATATGATTGCTACAATGCACCACTTGACTGCCAAGGACGTGGC
TCATACCTGACCGAGGTTACTGGAAATTGTTGTTCCGCATGTTATAAAGC
AGCGGGTGAACCGTGTGGCGGAATACACGACCATTTGGGAATTTGTGGTG
GAAAATTGACATGCGTGAGTAATCCTGGCCAAGAGCATTTGTTACCAGTC
AACAAACCTACTGGTGTCTGCCGAAGAAGGACTGCGCCACCAAAAACCAA
ACTTCCAAAGAAATGGGAAAAATTGATGCAAAGTGGACGAGTGACCAACA
AGTTGAGATCAGAATTAAGCAAATTATTTAAAAAAATCAAGACGTTGAAT
ACTTCagtatttcattaaaaaaacagaCGATCGAAAGGTTAATTTTTGCA
CCACATTTTTCTTAATTGTAAATAGATTAATtttagaaattaaagaaaaa
ccaGAAAATTCAGCTGAAAACTGTGCC Run BLAST on NCBI protein sequence of TCONS_00001770-protein >TCONS_00001770-protein ID=TCONS_00001770-protein|Name=TCONS_00001770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MIKILVLTLVLLAIEQVNGLSILGTCQEYDCYNAPLDCQGRGSYLTEVTG
NCCSACYKAAGEPCGGIHDHLGICGGKLTCVSNPGQEHLLPVNKPTGVCR
RRTAPPKTKLPKKWEKLMQSGRVTNKLRSELSKLFKKIKTLNTSVFH Run BLAST on NCBI transcript from alignment at sc0000012:198885..200687+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001770 ID=TCONS_00001770|Name=TCONS_00001770|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at sc0000012:198885..200687+ (Clytia hemisphaerica)
AAATAGCAGTGCAGAAATGACCATTACAATCATATTCAATTCTTTAACTT
TGATTAACACATACTAACTAAACCTTAGAGATAAATCTGAACCTTACAAG
AATCATCCTAACGAAGAAAGCATACCGACCGAACAAAACAACATCGACAA
GAGCAACACAAACTATACACAATAATGATTAAAATATTGGTATTGACATT
AGTTCTTCTAGCTATCGAACAGGTCAACGGATTATCGATATTAGGAACAT
GTCAAGAATATGATTGCTACAATGCACCACTTGACTGCCAAGGTAAAGca
catttctttttcattttatgtcgatttaatcatttttgtacaaaaatact
TGATTTAAAATAGCCAAGCTAAAGTTTCTGCTTACAATAAGGTCAAGTTT
TTTTCGTTTTGAAATGTCGCATTGTAATAGTCCGTGTAATTTCATCTGGA
TAATGTTTTTTACGAGTAGTTTATCATTATAGATAAGGTTTATACTTAGT
AGTCGTTAACGATTATCGGATTATCTAAATAAAACTGGACGGACTAAAGT
AGGGCAAACTCCTTTGAAGTGTGCGATTTCTACATGTTAACTGCACTTTC
TTTTACTTCTACACAGGACGTGGCTCATACCTGACCGAGGTTACTGGAAA
TTGTTGTTCCGCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAATAC
ACGACCATTTGGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATCCT
GGCCAAGAGCATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGTAA
GTATAAATATAATAAGCCCTCTTACTTCAATGGCTACGATATAGCTatca
taatttctttttaaaaaactctCCGACAAAGTTGAAGTCGACAGACTTAA
AACTTTTGCTTTTTGGCTGAATCTAACCTTTCGTAATAACATGAATAGTT
TGATTCTACCAACAAATGCTAGGTATGCGAAGGTAATCACGGATGCTTAA
AGTGCGTGCTTCAAATATAGTCTTATCTCATTCCTGACATTGCTTTAATT
AGATTCGTAGATTTCGCAACTATGTAAAAACGAAATGGCGAAGTATTTCC
TCAACGTGTTGTTCGTAAATCTATAAGAGACTATCATTACATCACACAAC
TCTATTTTGTAACTAAAACAAAATCCCACAATTCTTTGCAAGCAGTTAGA
AGATCTTCTCCTTACGCTTATTCAATTTCTGAAACTCAATCTGATggttt
cgttaattttttccttctatttctcttctctttttgtAGGAAGAAGGACT
GCGCCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCAAAG
TGGACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTAAAA
GTAAGTCACTTACCTTATGATTTTTGTTGCAATAGAAAACACGATGTATA
CTGCCTTAATAATATATCTGCTTGGAATGGTAGATGTCTGTCTGGTTTAA
TGATTTACTTTCTATGGTGAAAGTTTTTAATCTAAGAATATGTCTACAAG
TGCATTCCTCTCTGGAGCAAGGATTTAAGAAATTTGTCAATGAATTcgtt
caaaattaaaattttgagttttgaattGATATAACCTTgataattatttt
gttttatagAAATCAAGACGTTGAATACTTCagtatttcattaaaaaaac
agaCGATCGAAAGGTTAATTTTTGCACCACATTTTTCTTAATTGTAAATA
GATTAATtttagaaattaaagaaaaaccaGAAAATTCAGCTGAAAACTGT
GCC Coding sequence (CDS) from alignment at sc0000012:198885..200687+ >TCONS_00001770 ID=TCONS_00001770|Name=TCONS_00001770|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000012:198885..200687+ (Clytia hemisphaerica)
ATGATTAAAATATTGGTATTGACATTAGTTCTTCTAGCTATCGAACAGGT
CAACGGATTATCGATATTAGGAACATGTCAAGAATATGATTGCTACAATG
CACCACTTGACTGCCAAGGACGTGGCTCATACCTGACCGAGGTTACTGGA
AATTGTTGTTCCGCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAAT
ACACGACCATTTGGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATC
CTGGCCAAGAGCATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGA
AGAAGGACTGCGCCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATT
GATGCAAAGTGGACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAAT
TATTTAAAAAAATCAAGACGTTGAATACTTCagtatttcattaaATGATT
AAAATATTGGTATTGACATTAGTTCTTCTAGCTATCGAACAGGTCAACGG
ATTATCGATATTAGGAACATGTCAAGAATATGATTGCTACAATGCACCAC
TTGACTGCCAAGGACGTGGCTCATACCTGACCGAGGTTACTGGAAATTGT
TGTTCCGCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAATACACGA
CCATTTGGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATCCTGGCC
AAGAGCATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGAAGAAGG
ACTGCGCCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCA
AAGTGGACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTA
AAAAAATCAAGACGTTGAATACTTCagtatttcattaaATGATTAAAATA
TTGGTATTGACATTAGTTCTTCTAGCTATCGAACAGGTCAACGGATTATC
GATATTAGGAACATGTCAAGAATATGATTGCTACAATGCACCACTTGACT
GCCAAGGACGTGGCTCATACCTGACCGAGGTTACTGGAAATTGTTGTTCC
GCATGTTATAAAGCAGCGGGTGAACCGTGTGGCGGAATACACGACCATTT
GGGAATTTGTGGTGGAAAATTGACATGCGTGAGTAATCCTGGCCAAGAGC
ATTTGTTACCAGTCAACAAACCTACTGGTGTCTGCCGAAGAAGGACTGCG
CCACCAAAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCAAAGTGG
ACGAGTGACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTAAAAAAA
TCAAGACGTTGAATACTTCagtatttcattaaATGATTAAAATATTGGTA
TTGACATTAGTTCTTCTAGCTATCGAACAGGTCAACGGATTATCGATATT
AGGAACATGTCAAGAATATGATTGCTACAATGCACCACTTGACTGCCAAG
GACGTGGCTCATACCTGACCGAGGTTACTGGAAATTGTTGTTCCGCATGT
TATAAAGCAGCGGGTGAACCGTGTGGCGGAATACACGACCATTTGGGAAT
TTGTGGTGGAAAATTGACATGCGTGAGTAATCCTGGCCAAGAGCATTTGT
TACCAGTCAACAAACCTACTGGTGTCTGCCGAAGAAGGACTGCGCCACCA
AAAACCAAACTTCCAAAGAAATGGGAAAAATTGATGCAAAGTGGACGAGT
GACCAACAAGTTGAGATCAGAATTAAGCAAATTATTTAAAAAAATCAAGA
CGTTGAATACTTCagtatttcattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001770-exon-sc0000012-1491911889:198885..199176 | TCONS_00001770-exon-sc0000012-1491911889:198885..199176 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1510915933:198885..199176 | TCONS_00001770-exon-sc0000012-1510915933:198885..199176 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1575043694:198885..199176 | TCONS_00001770-exon-sc0000012-1575043694:198885..199176 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1491911889:199501..199680 | TCONS_00001770-exon-sc0000012-1491911889:199501..199680 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1510915933:199501..199680 | TCONS_00001770-exon-sc0000012-1510915933:199501..199680 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1575043694:199501..199680 | TCONS_00001770-exon-sc0000012-1575043694:199501..199680 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1491911889:200174..200284 | TCONS_00001770-exon-sc0000012-1491911889:200174..200284 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1510915933:200174..200284 | TCONS_00001770-exon-sc0000012-1510915933:200174..200284 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1575043694:200174..200284 | TCONS_00001770-exon-sc0000012-1575043694:200174..200284 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1491911889:200544..200687 | TCONS_00001770-exon-sc0000012-1491911889:200544..200687 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1510915933:200544..200687 | TCONS_00001770-exon-sc0000012-1510915933:200544..200687 | Clytia hemisphaerica | exon |
| TCONS_00001770-exon-sc0000012-1575043694:200544..200687 | TCONS_00001770-exon-sc0000012-1575043694:200544..200687 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:198885..200687 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009030 | Growth_fac_rcpt_ |
Blast
The following BLAST results are available for this feature:
|
