TCONS_00001762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001762
Unique NameTCONS_00001762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001762 ID=TCONS_00001762|Name=TCONS_00001762|organism=Clytia hemisphaerica|type=transcript|length=1389bp
tctgaaagggtcccaaatttaccaaacattcatatctgacagggtccact
tttcgaAATCAAGCAGCACGTCTCCGTCGGTTGTCAAGGTTGTACATGCA
ACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCtcttg
agatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAAAGC
ATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCGTCA
AGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactttgtgc
aaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACACGAC
AAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAACAGAC
AGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCTGACG
AACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGTAGAA
TCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCTCTTC
AACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGATGTAC
CTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAAAGAG
CTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCATCGC
TCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACTTCT
CATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTAAAT
AATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAATAGA
TTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTCACT
TAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAAAGT
ATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCTAAG
GATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACCCGT
CAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGTCCACA
ATGCCCTGTCTCTAGGGTTTTGTTATTCGTATCCAATCTCCTTCTGTGAT
TACACAATGTCTACCTTGAAGAAGTTACCGTCGTATTTTCTTGATATATG
AAGATTGcacaacatatttttttatgatcCAAGTATGTGGCATAATATGG
CGGTTGCTTCTTCAGGCACACGCATACTTTTGTACCATATCTGCTTTATT
GtaaataaaatttgtttataATTGACAActtcatttttgagaaaaatatt
gtgTGTAGAGTATattaatgaaaaaagaaaatttctctC
Run BLAST on NCBI

protein sequence of TCONS_00001762-protein

>TCONS_00001762-protein ID=TCONS_00001762-protein|Name=TCONS_00001762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MQLPLPSAHRYHHIGNSLEIFQKELANLDNVLLESISVDTRVLEQLQTYV
RQGYNNPFQVRAGLKDFVQNHMVGGLNETSPSKHDKTFYPSLIEIQNMIQ
QTEAAIETGVLSKLPTPDEPPVALRPKRKRTKTVESPGSSSSPNNNINNP
SSTTSASSLMIKRMKIDVPSNHNPDDMLTDDLKKELKTDGTLVLDDQNDT
IALTLTDNQLENFSVTNFSYDQLAQLAKIGLAALNNASKEPDGSSPQQET
IDFSQQQIMDNTDQVEVHLADKDDPNSLSTTDGESILIVTPSDVNDDKTH
LRIIATSENADQPTTTDPSAILANVVDIVDGT
Run BLAST on NCBI

transcript from alignment at sc0000012:154147..157085+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001762 ID=TCONS_00001762|Name=TCONS_00001762|organism=Clytia hemisphaerica|type=transcript|length=2939bp|location=Sequence derived from alignment at sc0000012:154147..157085+ (Clytia hemisphaerica)
tctgaaagggtcccaaatttaccaaacattcatatctgacagggtccact tttcgaAATCAAGCAGCACGTCTCCGTCGGTTGTCAAGGtcagtgggggg ggggggggccaaaCGAATAGTATGGATTTTATCTTTGTGATGACATTATG GTATGGCAACTTTTCTTCACGACCATGACAAGGCCTTGAATTAATTTGCA TTTGCTTCCATAACATCTCAGATCATAATCAACAATCCTGAACAAAAGGT GAACACACCGAAAttgtgaaacaaaaaaatttataagaaaaaatttattt ttgtagaTACCGAGACCCAGTTTTGACAGCCGACTTTCTGCCTTGCCTTC CCTTATTTTTGACGAAAGTCGGCAGGAAGTCGTTTGTCTAAAGTCAATGT GATGCCTTCTTTTCGTCAATgcaatttcaatctttttttaagcaaagatt tGAAACTGTAAACTTTCCGTCGATCTTCTACCGTCTCTCGCATCGAAAGG AGGCAAAGCAAAAAGTCGATCGTCTAAACTAGGTCTAACTATTTTCTAGC TattaatgtttttcattttcatcctcGAAGGTTGTACATGCAACTACCAT TACCATCCGCACATCGATACCATCATATTGGAAATTCtcttgagattttt caaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAAAGCATATCGGT CGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCGTCAAGGATATA ATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGGTATTCATGCatttttta atctcaaaatatatttcaatattAAGGGGAATCTTAGAAATTGAGAGAAA ACCTATTCAGAAAAGCtttttggaattattttcaaaatgtcactAACTTT AGGAAAACTCTGGTGGTTATTATTTCCAGATCTCTTTTACcagaaatgtt tgatttttaaagtttcGACTTGACTGAAGCTTGACTTTTTCATGGAGAAC ATTGGCcttattttgttcaaaaaatcaaagaaaaatcatCAGCTATTaga attttaaagattattttgtaAAACTAGTCACCACCAGTTGAACACATCAA AGATATTCATGCGATATTTATATTTTGTcaggactttgtgcaaaatcata TGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACACGACAAGACGTTT TATCCTTCATTGATTGAAATACAAAATATGATCCAACAGACAGAAGCTGC CATTGAAACCGGTGTCCTATCCAAGTTACCGACAGTAAGTGGTTTCAGTT CACTAAGGCTCCATCTATTATTATCGTTCAAAACATTAATAAACATAAAC TAGTTTTATTGATTGAGACTAATTTGATTAGTTAAGTATTCTGAATCTGG TTTTACAATTTGTCCAGGTTGACATTGCAAGAAGCTCGATTTCAGAACGC TTCAGGGCTTTGAATCGGTTCGATCGAAATTGGTCCTTTACTTTTAAGCG ATAGAACCTCAAATTGATAATAAACtacttaaatttttttcatgccATAT CTTCTTTTTGGTATAGAGCTGTTCTTAGATATCTTATTTTTGATGCTACA AGAtatgaatgttttttttcaacaacAGCCTGACGAACCACCAGTCGCTT TACGTCCAAAACGAAAACGAACGAAGACTGTAGAATCACCGGGATCATCT TCCTCTCCAAACAACAACATTAATAATCCCTCTTCAACAACCTCTGCTTC ATCTCTGATGATCAAGAGAATGAAAATTGATGTACCTTCTAATCATAACC CTGACGACATGCTCACAGATGATCTAAAGAAAGGTAAAaatagttttagt ttttttattttcaatttttttagtttcaacTTGTTTTCTAAGGGTGGGCA GACATTTGGAATAACGTCAGTCCCTGATTTTTCAGGAATTGTCCTGGATA CTTCTTTTAAAGTGCTTTTAGTGCTTTACGATGCAAAAACACTGCATTGG TTTGAAAGTTATGCCTTATAATCTGCAAGGTTCATCTTTTTCATCCTCCT GAAAAATTCGACTTTCAAGAAATTCAAACACATTTTTATGTATTTCCCAA gttctttttctcaaaagtgtAGAACTTCTGAGGCTACCTCTTGGGCTAAT AATAATTCATCGCTAaacaaataattattttctttttcccgATTATAGAG CTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCATCGC TCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACTTCT CATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTAAAT AATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAATAGA TTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTCACT TAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAAAGT ATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCTAAG GATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACCCGT CAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGTCCACA ATGCCCTGTCTCTAGGGTTTTGTTATTCGTATCCAATCTCCTTCTGTGAT TACACAATGTCTACCTTGAAGAAGTTACCGTCGTATTTTCTTGATATATG AAGATTGcacaacatatttttttatgatcCAAGTATGTGGCATAATATGG CGGTTGCTTCTTCAGGCACACGCATACTTTTGTACCATATCTGCTTTATT GtaaataaaatttgtttataATTGACAActtcatttttgagaaaaatatt gtgTGTAGAGTATattaatgaaaaaagaaaatttctctC

Coding sequence (CDS) from alignment at sc0000012:154147..157085+

>TCONS_00001762 ID=TCONS_00001762|Name=TCONS_00001762|organism=Clytia hemisphaerica|type=CDS|length=3996bp|location=Sequence derived from alignment at sc0000012:154147..157085+ (Clytia hemisphaerica)
ATGCAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTC
tcttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGG
AAAGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTT
CGTCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactt
tgtgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAAC
ACGACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAA
CAGACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACC
TGACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTG
TAGAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCC
TCTTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGA
TGTACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGA
AAGAGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACC
ATCGCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAA
CTTCTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTT
TAAATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACA
ATAGATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGT
TCACTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTG
AAAGTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCAT
CTAAGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGA
CCCGTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGA
TGCAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCt
cttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGA
AAGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTC
GTCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgacttt
gtgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACA
CGACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAAC
AGACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCT
GACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGT
AGAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCT
CTTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGAT
GTACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAA
AGAGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCA
TCGCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAAC
TTCTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTT
AAATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAA
TAGATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTT
CACTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGA
AAGTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATC
TAAGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGAC
CCGTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGAT
GCAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCtc
ttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAA
AGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCG
TCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactttg
tgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACAC
GACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAACA
GACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCTG
ACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGTA
GAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCTC
TTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGATG
TACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAAA
GAGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCAT
CGCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACT
TCTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTA
AATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAAT
AGATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTC
ACTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAA
AGTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCT
AAGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACC
CGTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGATG
CAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCtct
tgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAAA
GCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCGT
CAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactttgt
gcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACACG
ACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAACAG
ACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCTGA
CGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGTAG
AATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCTCT
TCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGATGT
ACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAAAG
AGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCATC
GCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACTT
CTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTAA
ATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAATA
GATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTCA
CTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAAA
GTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCTA
AGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACCC
GTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000946XLOC_000946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001762-exon-sc0000012-1491911889:154147..154234TCONS_00001762-exon-sc0000012-1491911889:154147..154234Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1510915933:154147..154234TCONS_00001762-exon-sc0000012-1510915933:154147..154234Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1575043694:154147..154234TCONS_00001762-exon-sc0000012-1575043694:154147..154234Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1491911889:154727..154928TCONS_00001762-exon-sc0000012-1491911889:154727..154928Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1510915933:154727..154928TCONS_00001762-exon-sc0000012-1510915933:154727..154928Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1575043694:154727..154928TCONS_00001762-exon-sc0000012-1575043694:154727..154928Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1491911889:155278..155430TCONS_00001762-exon-sc0000012-1491911889:155278..155430Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1510915933:155278..155430TCONS_00001762-exon-sc0000012-1510915933:155278..155430Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1575043694:155278..155430TCONS_00001762-exon-sc0000012-1575043694:155278..155430Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1491911889:155775..155979TCONS_00001762-exon-sc0000012-1491911889:155775..155979Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1510915933:155775..155979TCONS_00001762-exon-sc0000012-1510915933:155775..155979Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1575043694:155775..155979TCONS_00001762-exon-sc0000012-1575043694:155775..155979Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1491911889:156345..157085TCONS_00001762-exon-sc0000012-1491911889:156345..157085Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1510915933:156345..157085TCONS_00001762-exon-sc0000012-1510915933:156345..157085Clytia hemisphaericaexon
TCONS_00001762-exon-sc0000012-1575043694:156345..157085TCONS_00001762-exon-sc0000012-1575043694:156345..157085Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001762-proteinTCONS_00001762-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:154147..157085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3639 9.78312 6.09616 3.54541 43.226 32.6797 9.99993 10.8592 7.33758 5.89426 4.96618 4.24735 3.6754 3.63634 3.30663 4.86976 5.25763 4.48786 3.45367 2.84117 3.40302 3.72384 10.4165 8.76459 16.246 12.6625 2.23804 1.40299 5.37486 6.3974
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029309CaRF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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