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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001760 ID=TCONS_00001760|Name=TCONS_00001760|organism=Clytia hemisphaerica|type=transcript|length=2068bpRun BLAST on NCBI protein sequence of TCONS_00001760-protein >TCONS_00001760-protein ID=TCONS_00001760-protein|Name=TCONS_00001760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp MGNLLRLITGESKEDSQQIFLDFENARPTPEEQEVWEVVNTVLENSSKVLRun BLAST on NCBI transcript from alignment at sc0000012:31699..56850+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001760 ID=TCONS_00001760|Name=TCONS_00001760|organism=Clytia hemisphaerica|type=transcript|length=25152bp|location=Sequence derived from alignment at sc0000012:31699..56850+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:31699..56850+ >TCONS_00001760 ID=TCONS_00001760|Name=TCONS_00001760|organism=Clytia hemisphaerica|type=CDS|length=10890bp|location=Sequence derived from alignment at sc0000012:31699..56850+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001760 vs. Swiss-Prot (Human)
Match: FA49B (Protein FAM49B OS=Homo sapiens GN=FAM49B PE=1 SV=1) HSP 1 Score: 413.305 bits (1061), Expect = 1.262e-138 Identity = 203/328 (61.89%), Postives = 247/328 (75.30%), Query Frame = 1
Query: 73 MGNLLRLITGESKEDSQQIFLDFENARPTPEEQEVWEVVNTVLENSSKVLDELKNYRGASDEIRQAISNSRDDALQEVAWQQVLPLVAKLKHFYEFSMELETIVPQLLHALCVSGTSADQRLTNKQALAKQFAEVLHFTLKFDDLKLTNPNIQNDFSYYRRTLSRKRIANEDSGVSAADDQAQVTTEMANRMSLFYAYPTPMLKTLSDATSKFVSENKNLPIENTTDMLSTLCTLCRVMVENEEIAQKFENEETKLFVLSVMVGVVILYDHVHPVGAFTKVSAIDMRATIRVLKDQPQGTVDGLFNALRYTTKHLSDDTTPKQIKMLL 1056
MGNLL+++T E FLDFENA+PT E+E++ VN VL+++ +L++L++YRGA EIR+AI + D+ LQE AW V+PLV KLK FYEFS LE + LL AL + S Q L +QALAKQFAE+LHFTL+FD+LK+TNP IQNDFSYYRRTLSR RI N A+ + +V E+ANRMSLFYA TPMLKTLSDAT+KFVSENKNLPIENTTD LST+ ++CRVM+E E +F NEET F L VMVGV+ILYDHVHPVGAF K S IDM+ I+VLKDQP +V+GL NALRYTTKHL+D+TT KQIK +L
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINN-----VPAEGENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLLNALRYTTKHLNDETTSKQIKSML 323 The following BLAST results are available for this feature:
BLAST of TCONS_00001760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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