TCONS_00001755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001755
Unique NameTCONS_00001755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001755 ID=TCONS_00001755|Name=TCONS_00001755|organism=Clytia hemisphaerica|type=transcript|length=495bp
ACAATCATTCTTGACAAATCAAACATCGGGATTATCACTATCAAGAAATC
GGGGAAATATGGGAAGTCAAGAAATGATTGGGTTTTGTATTGGTACAATT
TTCGGTAGTATTGTTTTGATTGCAGTGTTTTATTATTTGTGTAAAGAATA
TTGCTGGAAAAGATATTTTCGTAAATTGACcattaaaaaagagaaattat
aCGAGTTAGAATCAAGCAGTGAAGAAACTCAAACTTTGGGTAATAATCCT
GATTCATTGAAGAATGGATTGAAAACACCAGCAACTAATACAGAAGATGA
TGAAGTATTGTTGGAATTGGTTACCATTGAATTGAAAGGTAACCAAAGAA
TCGAAAATACTGAATcataatttcattttattttcatattttctggATTG
TTAGTCAGATTGCCAGCGATTTCATCTACAAACATAGACGATTTTTTAAC
AGACTTTTAAAACTGAAGATTGGGATGAGGACAAGCCAATCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00001755-protein

>TCONS_00001755-protein ID=TCONS_00001755-protein|Name=TCONS_00001755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
QSFLTNQTSGLSLSRNRGNMGSQEMIGFCIGTIFGSIVLIAVFYYLCKEY
CWKRYFRKLTIKKEKLYELESSSEETQTLGNNPDSLKNGLKTPATNTEDD
EVLLELVTIELKGNQRIENTES
Run BLAST on NCBI

transcript from alignment at sc0000011:1155976..1156470

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001755 ID=TCONS_00001755|Name=TCONS_00001755|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at sc0000011:1155976..1156470 (Clytia hemisphaerica)
CCTTGATTGGCTTGTCCTCATCCCAATCTTCAGTTTTAAAAGTCTGTTAA
AAAATCGTCTATGTTTGTAGATGAAATCGCTGGCAATCTGACTAACAATc
cagaaaatatgaaaataaaatgaaattatgATTCAGTATTTTCGATTCTT
TGGTTACCTTTCAATTCAATGGTAACCAATTCCAACAATACTTCATCATC
TTCTGTATTAGTTGCTGGTGTTTTCAATCCATTCTTCAATGAATCAGGAT
TATTACCCAAAGTTTGAGTTTCTTCACTGCTTGATTCTAACTCGtataat
ttctcttttttaatgGTCAATTTACGAAAATATCTTTTCCAGCAATATTC
TTTACACAAATAATAAAACACTGCAATCAAAACAATACTACCGAAAATTG
TACCAATACAAAACCCAATCATTTCTTGACTTCCCATATTTCCCCGATTT
CTTGATAGTGATAATCCCGATGTTTGATTTGTCAAGAATGATTGT

Coding sequence (CDS) from alignment at sc0000011:1155976..1156470

>TCONS_00001755 ID=TCONS_00001755|Name=TCONS_00001755|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0000011:1155976..1156470 (Clytia hemisphaerica)
ttatgATTCAGTATTTTCGATTCTTTGGTTACCTTTCAATTCAATGGTAA
CCAATTCCAACAATACTTCATCATCTTCTGTATTAGTTGCTGGTGTTTTC
AATCCATTCTTCAATGAATCAGGATTATTACCCAAAGTTTGAGTTTCTTC
ACTGCTTGATTCTAACTCGtataatttctcttttttaatgGTCAATTTAC
GAAAATATCTTTTCCAGCAATATTCTTTACACAAATAATAAAACACTGCA
ATCAAAACAATACTACCGAAAATTGTACCAATACAAAACCCAATCATTTC
TTGACTTCCCATATTTCCCCGATTTCTTGATAGTGATAATCCCGATGTTT
GATTTGTCAAGAATGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000940XLOC_000940Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001755-proteinTCONS_00001755-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001755-exon-sc0000011-1491911889:1155976..1156470TCONS_00001755-exon-sc0000011-1491911889:1155976..1156470Clytia hemisphaericaexon
TCONS_00001755-exon-sc0000011-1510915933:1155976..1156470TCONS_00001755-exon-sc0000011-1510915933:1155976..1156470Clytia hemisphaericaexon
TCONS_00001755-exon-sc0000011-1575043694:1155976..1156470TCONS_00001755-exon-sc0000011-1575043694:1155976..1156470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:1155976..1156470 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.149306	0	0.388443	0	0	0.165001	0.0856775	1.8314	0	0.279367	0.0954475	0.131866	0.551952	0.479747	0	0.284462	1.4224	0.26637	0.356593	72.4603	44.2932	0.963786	0.420834
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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