TCONS_00001753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001753
Unique NameTCONS_00001753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001753 ID=TCONS_00001753|Name=TCONS_00001753|organism=Clytia hemisphaerica|type=transcript|length=1671bp
CGATTTTGAGTGTTACATTCAACTGATTGCCAAGAAGGGAAACACATCTC
TACTATTTCCACATTCGAACACTGGAAAAAAAGGATCTGGAAAATCATCA
AATAGTCCTGTCAAGCTGTGTTTACAAGATATGGATATCAGCTTTATGTG
TGGAGTATGTTTGCCTTTTTCATTCCGTATCATTTTCACTGTCTGTTATG
GTTTGATGACAATTTTTGGTGGGATTGGGAATGTTATTTCCATCGTCAGT
ATTTATAAAAAGTATCAAAACCCAAACGACCGAGACGAGATTGATCTGAT
TTTATTATCACTTGCTGTTTGTGATGCATTGGTTTCGATCACTATTTATC
CTGGATATCCTTGGCTAAACTTTTGGACCTTTGATGAATTTGACTCGTTC
CCCAACAGGCTTTTTGGCATGTTGGTTTTAAGCTTGACTTCGACCTCATC
TTTAACCATCGTGTTGTTAGCCGCCATCAAATATCTGAAGATTTCAAGAC
CGAGCACTTTCGAAAATATTATAACTGCAAGACGATTGCGAGCCATGATA
CTGATGTGTTGGTTTTTACCATTGTTAGCGTTCACGCCTTCTCTGCTCGA
TAAAGAACTAGTCTGGACAATCAACGTTCTCTCATTCATAGGAACTCTAA
TCACTCTGATAGCTTTGCCAGTATTCTGTTCACTAATACTGCATGTCTTC
AAGAAATCTAGGAGACAAGTAGAGGAAATGGCCAATTCAACTGTCCAACA
AGAATCGAACAACCTGGCAACAGAGCGTATTTCCAACAAGTTGGTGCGGC
GTGCACTATGGTTGATCGGTGTCTATTTCGCGTGTATAAGTCTCACTTTT
TTCTCCATCACTTGTTATTCCTTTGGTGTCACGAATGAAGGTTACCTTTA
TCAAGTTACGAATGTGTTTTTTCTTGGCAATAGTTGTGCCAACCCTTGCA
TTTACATGTATAAAGACAAAAAACTCCGGAAGATTGCAGTGAATTACTTC
AAAAGATCGCAAAGAGTATAAGACAATAACTTAATGCCCAATATCATAAC
GATTGACAATGTTGAACACTTATTTGTATGAAAAACATTGGAAATCGCTG
GAAATGATCCTCCAGTAAGCAATGGGCGGGCCCTTCGACATTGCTACTTA
CGAAGAGAGGGGATGGAGATTATATTGTAACTTTTTCCACCATGTTAACG
CAGCATGTTCGATGTTCTTTTTATTAGTATGCAGTAACAGTGAAGCAAAT
TAACTACccggagggggtactagggttggcggatgaggggtatgtgacCT
CCGAAGACCGACTCTTATAGAGACTGATTTATTCAGTGCAAAAATGCCCT
TTAGAAAGactgtttttgaaagttttttgaaaatattctccgatttttga
aaaaagtcttaccctcttagagagacttttttacaatttttactctcgaa
ctcaaaaaaaattctctaaaaatcgtgaattttccgacccttagagaaac
tactttaaaattattcttagagactttggaaggaGAAAAAACCGACCTTT
CTCATCACATCTGCACATATTCAGAACaaatttttgcctaagtacccccc
cctcTCCTCCGGGATTAgctaaagaatttttttcgtttttgcCCGAGTGA
CGCAGGAGGAgttctttcttt
Run BLAST on NCBI

protein sequence of TCONS_00001753-protein

>TCONS_00001753-protein ID=TCONS_00001753-protein|Name=TCONS_00001753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
DFECYIQLIAKKGNTSLLFPHSNTGKKGSGKSSNSPVKLCLQDMDISFMC
GVCLPFSFRIIFTVCYGLMTIFGGIGNVISIVSIYKKYQNPNDRDEIDLI
LLSLAVCDALVSITIYPGYPWLNFWTFDEFDSFPNRLFGMLVLSLTSTSS
LTIVLLAAIKYLKISRPSTFENIITARRLRAMILMCWFLPLLAFTPSLLD
KELVWTINVLSFIGTLITLIALPVFCSLILHVFKKSRRQVEEMANSTVQQ
ESNNLATERISNKLVRRALWLIGVYFACISLTFFSITCYSFGVTNEGYLY
QVTNVFFLGNSCANPCIYMYKDKKLRKIAVNYFKRSQRV
Run BLAST on NCBI

transcript from alignment at sc0000011:1111836..1113506

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001753 ID=TCONS_00001753|Name=TCONS_00001753|organism=Clytia hemisphaerica|type=transcript|length=1671bp|location=Sequence derived from alignment at sc0000011:1111836..1113506 (Clytia hemisphaerica)
aaagaaagaacTCCTCCTGCGTCACTCGGgcaaaaacgaaaaaaattctt tagcTAATCCCGGAGGAgaggggggggtacttaggcaaaaatttGTTCTG AATATGTGCAGATGTGATGAGAAAGGTCGGTTTTTTCtccttccaaagtc tctaagaataattttaaagtagtttctctaagggtcggaaaattcacgat ttttagagaattttttttgagttcgagagtaaaaattgtaaaaaagtctc tctaagagggtaagacttttttcaaaaatcggagaatattttcaaaaaac tttcaaaaacagtCTTTCTAAAGGGCATTTTTGCACTGAATAAATCAGTC TCTATAAGAGTCGGTCTTCGGAGgtcacatacccctcatccgccaaccct agtaccccctccggGTAGTTAATTTGCTTCACTGTTACTGCATACTAATA AAAAGAACATCGAACATGCTGCGTTAACATGGTGGAAAAAGTTACAATAT AATCTCCATCCCCTCTCTTCGTAAGTAGCAATGTCGAAGGGCCCGCCCAT TGCTTACTGGAGGATCATTTCCAGCGATTTCCAATGTTTTTCATACAAAT AAGTGTTCAACATTGTCAATCGTTATGATATTGGGCATTAAGTTATTGTC TTATACTCTTTGCGATCTTTTGAAGTAATTCACTGCAATCTTCCGGAGTT TTTTGTCTTTATACATGTAAATGCAAGGGTTGGCACAACTATTGCCAAGA AAAAACACATTCGTAACTTGATAAAGGTAACCTTCATTCGTGACACCAAA GGAATAACAAGTGATGGAGAAAAAAGTGAGACTTATACACGCGAAATAGA CACCGATCAACCATAGTGCACGCCGCACCAACTTGTTGGAAATACGCTCT GTTGCCAGGTTGTTCGATTCTTGTTGGACAGTTGAATTGGCCATTTCCTC TACTTGTCTCCTAGATTTCTTGAAGACATGCAGTATTAGTGAACAGAATA CTGGCAAAGCTATCAGAGTGATTAGAGTTCCTATGAATGAGAGAACGTTG ATTGTCCAGACTAGTTCTTTATCGAGCAGAGAAGGCGTGAACGCTAACAA TGGTAAAAACCAACACATCAGTATCATGGCTCGCAATCGTCTTGCAGTTA TAATATTTTCGAAAGTGCTCGGTCTTGAAATCTTCAGATATTTGATGGCG GCTAACAACACGATGGTTAAAGATGAGGTCGAAGTCAAGCTTAAAACCAA CATGCCAAAAAGCCTGTTGGGGAACGAGTCAAATTCATCAAAGGTCCAAA AGTTTAGCCAAGGATATCCAGGATAAATAGTGATCGAAACCAATGCATCA CAAACAGCAAGTGATAATAAAATCAGATCAATCTCGTCTCGGTCGTTTGG GTTTTGATACTTTTTATAAATACTGACGATGGAAATAACATTCCCAATCC CACCAAAAATTGTCATCAAACCATAACAGACAGTGAAAATGATACGGAAT GAAAAAGGCAAACATACTCCACACATAAAGCTGATATCCATATCTTGTAA ACACAGCTTGACAGGACTATTTGATGATTTTCCAGATCCTTTTTTTCCAG TGTTCGAATGTGGAAATAGTAGAGATGTGTTTCCCTTCTTGGCAATCAGT TGAATGTAACACTCAAAATCG

Coding sequence (CDS) from alignment at sc0000011:1111836..1113506

>TCONS_00001753 ID=TCONS_00001753|Name=TCONS_00001753|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000011:1111836..1113506 (Clytia hemisphaerica)
TTATACTCTTTGCGATCTTTTGAAGTAATTCACTGCAATCTTCCGGAGTT
TTTTGTCTTTATACATGTAAATGCAAGGGTTGGCACAACTATTGCCAAGA
AAAAACACATTCGTAACTTGATAAAGGTAACCTTCATTCGTGACACCAAA
GGAATAACAAGTGATGGAGAAAAAAGTGAGACTTATACACGCGAAATAGA
CACCGATCAACCATAGTGCACGCCGCACCAACTTGTTGGAAATACGCTCT
GTTGCCAGGTTGTTCGATTCTTGTTGGACAGTTGAATTGGCCATTTCCTC
TACTTGTCTCCTAGATTTCTTGAAGACATGCAGTATTAGTGAACAGAATA
CTGGCAAAGCTATCAGAGTGATTAGAGTTCCTATGAATGAGAGAACGTTG
ATTGTCCAGACTAGTTCTTTATCGAGCAGAGAAGGCGTGAACGCTAACAA
TGGTAAAAACCAACACATCAGTATCATGGCTCGCAATCGTCTTGCAGTTA
TAATATTTTCGAAAGTGCTCGGTCTTGAAATCTTCAGATATTTGATGGCG
GCTAACAACACGATGGTTAAAGATGAGGTCGAAGTCAAGCTTAAAACCAA
CATGCCAAAAAGCCTGTTGGGGAACGAGTCAAATTCATCAAAGGTCCAAA
AGTTTAGCCAAGGATATCCAGGATAAATAGTGATCGAAACCAATGCATCA
CAAACAGCAAGTGATAATAAAATCAGATCAATCTCGTCTCGGTCGTTTGG
GTTTTGATACTTTTTATAAATACTGACGATGGAAATAACATTCCCAATCC
CACCAAAAATTGTCATCAAACCATAACAGACAGTGAAAATGATACGGAAT
GAAAAAGGCAAACATACTCCACACATAAAGCTGATATCCATATCTTGTAA
ACACAGCTTGACAGGACTATTTGATGATTTTCCAGATCCTTTTTTTCCAG
TGTTCGAATGTGGAAATAGTAGAGATGTGTTTCCCTTCTTGGCAATCAGT
TGAATGTAACACTCAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000938XLOC_000938Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001753-proteinTCONS_00001753-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001753-exon-sc0000011-1491911889:1111836..1113506TCONS_00001753-exon-sc0000011-1491911889:1111836..1113506Clytia hemisphaericaexon
TCONS_00001753-exon-sc0000011-1510915933:1111836..1113506TCONS_00001753-exon-sc0000011-1510915933:1111836..1113506Clytia hemisphaericaexon
TCONS_00001753-exon-sc0000011-1575043694:1111836..1113506TCONS_00001753-exon-sc0000011-1575043694:1111836..1113506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:1111836..1113506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218399 0.402284 0.688165 0.32257 4.28695 2.66354 2.62068 2.54107 4.25339 4.07803 2.60604 4.08884 0.290501 0.284928 0.110235 0.325322 0.0546505 0.430178 0.206367 0.350916 0.211161 0.377655 0.306059 0.379435 0.26054 0.651979 0.266194 0.248579 0.484812 0.603713
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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