TCONS_00001741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001741
Unique NameTCONS_00001741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001741 ID=TCONS_00001741|Name=TCONS_00001741|organism=Clytia hemisphaerica|type=transcript|length=463bp
GCAAACTTTTTAAGctcttatttggaaaatatgtactttttattcttttc
ttagcgaaagaaaatactttataacATTGTCTCTCCCAGTGCCCGGTGAG
AACTTTCATACCCTTTGGAAAAATGAaggataataaaaaaaaaacggtaa
GGAAAATAGAACATAAAAATGTCTGGGGCATATTTTCTCACCGGGCCGAT
TATTTATTGCCAATTGTTCCACTAGGAAGGGGCTCCACCGTGTCATACTT
GTTTGCCCCTTTTTCGAATTTCCGCTTGCAGAAATAtttgcacccctgtc
tcagagaTGATTTAAGCCAGGGGATGCGAGACCTCCGAGAGAATGAACAG
CATATGAACGAACGGGAAATTATGTCTTGCTTCATACTGTACCTTGTCTC
ATTATCAAGCCTTTAGAAATAATCCCTTTCTTCAAAGACATTTCCTAGGA
AGGACGAGAGATC
Run BLAST on NCBI

transcript from alignment at sc0000011:735358..735820

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001741 ID=TCONS_00001741|Name=TCONS_00001741|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at sc0000011:735358..735820 (Clytia hemisphaerica)
GATCTCTCGTCCTTCCTAGGAAATGTCTTTGAAGAAAGGGATTATTTCTA
AAGGCTTGATAATGAGACAAGGTACAGTATGAAGCAAGACATAATTTCCC
GTTCGTTCATATGCTGTTCATTCTCTCGGAGGTCTCGCATCCCCTGGCTT
AAATCAtctctgagacaggggtgcaaaTATTTCTGCAAGCGGAAATTCGA
AAAAGGGGCAAACAAGTATGACACGGTGGAGCCCCTTCCTAGTGGAACAA
TTGGCAATAAATAATCGGCCCGGTGAGAAAATATGCCCCAGACATTTTTA
TGTTCTATTTTCCttaccgttttttttttattatcctTCATTTTTCCAAA
GGGTATGAAAGTTCTCACCGGGCACTGGGAGAGACAATgttataaagtat
tttctttcgctaagaaaagaataaaaagtacatattttccaaataagagC
TTAAAAAGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000927XLOC_000927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001741-exon-sc0000011-1491911889:735358..735820TCONS_00001741-exon-sc0000011-1491911889:735358..735820Clytia hemisphaericaexon
TCONS_00001741-exon-sc0000011-1510915933:735358..735820TCONS_00001741-exon-sc0000011-1510915933:735358..735820Clytia hemisphaericaexon
TCONS_00001741-exon-sc0000011-1575043694:735358..735820TCONS_00001741-exon-sc0000011-1575043694:735358..735820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:735358..735820 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398181	1.64295	3.38623	2.5645	1.27359	1.13307	0.782837	1.2927	0.663684	0.641809	1.4662	2.22438	1.0881	1.80077	0.491285	0.716661	0.942349	0.546117	0.943776	0.622428	1.91803	1.01566	0	0.163214	0.733072	1.26392	1.05217	0.554138	1.38578	1.34405
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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