TCONS_00001734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001734
Unique NameTCONS_00001734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001734 ID=TCONS_00001734|Name=TCONS_00001734|organism=Clytia hemisphaerica|type=transcript|length=600bp
tttatgttttgctAAAGTGACATTGAGATCCATTTTTCTAGGACTTACTA
TTGTTCAGGAATTTGTAAAACTGGCCATGAAATTCACCACAAGGTTCGTC
ACCgctttgtgtctttttatttcgaCCATGGCTAGCTCAAATAAAATTCT
TATACATCAATTGCACCACAGAGCAAAAACAACCACGataaaacaaattt
tctgaTCTCTGACAACTTTATTGGTTCATCTGaaacttttgtttattttt
ttttgacaatcgaacattttagaatttgaaaattcgaacgttcgaatttc
gaataaaaaaattcgaaagagGAAGTAagtacatgctttttttataagaa
tggtggtTTTCCAATTTATCATGAATAtctgaatattcttaactttttgg
aaaaaaacgcaaaaaacttACCGTCACAAACGGTTCTAAGTTTTAAAAAC
TGTATGTGACGAATGGTTTTTCTTAGTTTGTGAAGTTTATCGCTTTTTTA
AACAGAGGTTTTCCTCGTATTCTTGCTTTTAATGATgaaaattatttgat
ttttctttgacttcAAACAGAGTcgctgagacaggggtgtagggAAATTT
Run BLAST on NCBI

transcript from alignment at sc0000011:613788..614387

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001734 ID=TCONS_00001734|Name=TCONS_00001734|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0000011:613788..614387 (Clytia hemisphaerica)
AAATTTccctacacccctgtctcagcgACTCTGTTTgaagtcaaagaaaa
atcaaataattttcATCATTAAAAGCAAGAATACGAGGAAAACCTCTGTT
TAAAAAAGCGATAAACTTCACAAACTAAGAAAAACCATTCGTCACATACA
GTTTTTAAAACTTAGAACCGTTTGTGACGGTaagttttttgcgttttttt
ccaaaaagttaagaatattcagaTATTCATGATAAATTGGAAAaccacca
ttcttataaaaaaagcatgtactTACTTCctctttcgaatttttttattc
gaaattcgaacgttcgaattttcaaattctaaaatgttcgattgtcaaaa
aaaaataaacaaaagtttCAGATGAACCAATAAAGTTGTCAGAGAtcaga
aaatttgttttatCGTGGTTGTTTTTGCTCTGTGGTGCAATTGATGTATA
AGAATTTTATTTGAGCTAGCCATGGtcgaaataaaaagacacaaagcGGT
GACGAACCTTGTGGTGAATTTCATGGCCAGTTTTACAAATTCCTGAACAA
TAGTAAGTCCTAGAAAAATGGATCTCAATGTCACTTTagcaaaacataaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000920XLOC_000920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001734-exon-sc0000011-1491911889:613788..614387TCONS_00001734-exon-sc0000011-1491911889:613788..614387Clytia hemisphaericaexon
TCONS_00001734-exon-sc0000011-1510915933:613788..614387TCONS_00001734-exon-sc0000011-1510915933:613788..614387Clytia hemisphaericaexon
TCONS_00001734-exon-sc0000011-1575043694:613788..614387TCONS_00001734-exon-sc0000011-1575043694:613788..614387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:613788..614387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.362944	0.530891	0.410943	0.201022	0.611812	0	0.233311	0.546057	0.382307	0	0	0.120859	0.362074	0	0.257614	0.442335	0.544921	0.488711	0	0.100932	0.789558	0.641864	0.624216	0.0945838	0.0974191	0.521666	0.248834	0.398343	0	0.307822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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