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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001733 ID=TCONS_00001733|Name=TCONS_00001733|organism=Clytia hemisphaerica|type=transcript|length=3199bp
TTTCAGGTCATATATTTTCATCTCATTTATACATCTTCAGCCATTATGTA
TGCTGATCAACTTTTTTGAGTGCATCTTCATCATAAGTATGTTTcttaat
tattttcttttatatttttagatgaaaaaatgagtaatccATTTAACTTG
ACTTTACATGTGACAAATTATGTGGCAAAGTCACTCCAAGATCTTCAGGA
GCTAATCGAATATAGATTTCACATACCAAGAGATTTACAAGTTTTTGTTT
TCTCCAGTACAATTTTGACTGACGAAATATATTCATATTATATGAGGATT
GGAGAAATACAACAACACAGAATAGAATTTTATATGAAAGGGACTTCTGA
TTCAAATCTGTTACAATTATTTAATGATGCAAAATTAAATCAACGCCTGA
AGCACATCAATATATATGATACCAGAAGAAGAACTATTGATGAGATTGAA
CAACCAAAATTGAATTTAACACTTACTGAcctcaaaaaaaaggttttttg
gagaACTGAAATAAAGCCTGAACACCAAGTGTTTTCATATAAACAGCCGC
AAAGAACAGCAAGATCTACACAAAAGGATATGCAAATCCTAAAATATGAT
GGACAGTTTTTGGTTGATCTTTTTTTTGAGGGAGagtatttgagaaaaat
agTTGACCTATATTTAATGGTTGACACAACATTGTTTACAGGACAAGATG
AGGCTAACTACATTAAGGCTCAACAACATTTTACTCACATAGCTATTCCT
GTTATTAAAATTAGCTTACCTGGAAGGGGCTCAGATATTCTTTGTGAATA
TCCTATAGTTGATGTTGGTTCCTTTGCCGTTGATGACCTCAAAAGTTATA
TTAAAAAATTGTACGGTATTCCTGAAAAAGAACAATTATTGGTATTCAAT
AATTCTGTTATAGAATCTTTATCATTGGATACTTTATTTTCATCAGAACT
TCCTACAGATCCTTACATAATATCTGTATTTATTTTTGGTACTGATAATC
AGGAGCTATTGAAGCTTTATAATGAAAACGGTTTATCTATGATGAATCCT
ATAAATATTGTCAATCCAAAAGACAAAAGGAAGTTGTTTACGTATTATTT
TGAGAATGGTTATGCAGAGGATGGTTTGGAAAGATTTATAGAAGAGAATT
ACCAAATACCAATATCTAAACAGGTGCTCTTTTGGAAgggaaaacatttg
aaaaattcaatggAAATATATTCTAAATATTGGGATGGTTCAATTTCAAG
AGATGAAATAGTGTATGTCGATTTTGCAATTAGAATTGATGTCCAGACTG
AATGTGACCTTGTGGAAAACGCTTCATCTCTTAATCTAAACACAATAAAC
AATGCTGTTGTATTACATCCAAATAATGAAGAAATTGTGGGAAATTTTTC
AATGGATCTCAGTATTGAGAAACTTAAGAAAGATATTGCATCTACACTCA
ACTTTGATGATTGGAAGATCATTGAATTAAGCTACCAAAGTTGCCTGCTG
AAAAGTACGGATAATCTGTACAATTTACTGTTTGagggaaaacatttttc
aaatgaaTTACATGTTAATATGCTGATCAGTCCTACCAAAAACACAAAGA
TTCAAGAagtttgcaaagaaaaaaatatcccTCTTTTAAGGAGAATCAAT
GTCAAGCTTCTAACAGAAATTATAACGATAGATGCTGGAATAACCGAAAT
CAGAAACATATCTGAGCTTATGGAAGTCATTCAAACAGAAAAAATGATAC
CTAAGCACATGCAAAAGATCTTGTTCGACAACATGGAGCTCAAAGAGGAA
ATTCAATTAATGGAATTTTTACTTGAGAATGATTTGGTGATGAATGATGA
GATATCTGTATTATTGATTGTCAGCACTCCTGAAGTAGTTACCGTTGATC
TGGATGCTAGTTTCAACATACAAGAAAATAAAATCCAGATTGCTGAAACT
GCTACTATTCTACAATTGAAAGAAGTCGTTAGTGGATTGATAAGTGTCCC
AGAATCTCATTTTGATCTTGTTAATTTGCATGATATCCAGAGAATTAAAC
CGCTATTGAACGACCAGCAGATTTGGCAAGTAAAACAAAATGGTACCTAC
AAAATTGTTGTTATCAAGAAAATCAAGATTGTGATTCAGAAAATCAATGA
GGAtcctttgaatttcttttttccaatcACTAATTGGGAATCTGAAACAA
TTGATAGTATGAGACTGGCATTAACAGAAGATCGCTTTCCAAATCAgcca
atgaaactgatttttaaAGAAGAGGATTATGATGGTGTCTTTGCAACAAC
ATTGTTAAAAGATTTGAATgtgcaaactatttttttccattCGGAAAATA
ATAGTAATTGTGTAAAATGTTCATTGATGTAGAGTCTGGTATTTTTAAAC
ATTTGTGTGATGGTTTTTTTTAGATTGATCTTAGAGTagttgtattcatg
atatgcaccactggagagtcttccgagaacttttaaaattttccacccaa
tacgtcacttaaacaacagaaaaagtgacgtattgggtggaacaaaaaca
gaaaagttgcataatttcgtgaagtcattgcagtggtgcatatcatgaat
aaggcCACATTAGACTTAATACATTATCTTCACTTCTGTTGCAACATTGA
ATCCTTCAACAATAAACAATGTGGAACATTTTGAGCCAGCTTTTGTAGTC
GTATTTTCTGTTGaaataatttgatatttttatagtaaaactttttttta
aagatttgtagCCGTAATTTCTGTTAtaataatttgatatttttatagta
aaacttttttttaaagatttgtagCCGTAATTTCTGTTAtaataatttga
tatttttatagtaaaactttttttttaagatttgtaGCCGTAATTTCTGT
TAtgataatttgatatttttatagtaaaacttttttttaaagatttgtag
TCGTAAATTCTGTTAtaataatttgatatttttatagtaaaacttttttt
ttaagatttgtaGCCGTAATTTCTGTTAtgataatttgatatttttatag
taaaacttttttttaaagatttgtagTCGTAAATTCTGTTAtgataattt
gatattttttttagtaaaactttttttttaagatttgtaGCCGTAATTTC
TGTTAtaataatttgatatttttatagtaaaacttttttttaagattcC Run BLAST on NCBI protein sequence of TCONS_00001733-protein >TCONS_00001733-protein ID=TCONS_00001733-protein|Name=TCONS_00001733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=750bp
MSNPFNLTLHVTNYVAKSLQDLQELIEYRFHIPRDLQVFVFSSTILTDEI
YSYYMRIGEIQQHRIEFYMKGTSDSNLLQLFNDAKLNQRLKHINIYDTRR
RTIDEIEQPKLNLTLTDLKKKVFWRTEIKPEHQVFSYKQPQRTARSTQKD
MQILKYDGQFLVDLFFEGEYLRKIVDLYLMVDTTLFTGQDEANYIKAQQH
FTHIAIPVIKISLPGRGSDILCEYPIVDVGSFAVDDLKSYIKKLYGIPEK
EQLLVFNNSVIESLSLDTLFSSELPTDPYIISVFIFGTDNQELLKLYNEN
GLSMMNPINIVNPKDKRKLFTYYFENGYAEDGLERFIEENYQIPISKQVL
FWKGKHLKNSMEIYSKYWDGSISRDEIVYVDFAIRIDVQTECDLVENASS
LNLNTINNAVVLHPNNEEIVGNFSMDLSIEKLKKDIASTLNFDDWKIIEL
SYQSCLLKSTDNLYNLLFEGKHFSNELHVNMLISPTKNTKIQEVCKEKNI
PLLRRINVKLLTEIITIDAGITEIRNISELMEVIQTEKMIPKHMQKILFD
NMELKEEIQLMEFLLENDLVMNDEISVLLIVSTPEVVTVDLDASFNIQEN
KIQIAETATILQLKEVVSGLISVPESHFDLVNLHDIQRIKPLLNDQQIWQ
VKQNGTYKIVVIKKIKIVIQKINEDPLNFFFPITNWESETIDSMRLALTE
DRFPNQPMKLIFKEEDYDGVFATTLLKDLNVQTIFFHSENNSNCVKCSLM Run BLAST on NCBI transcript from alignment at sc0000011:604808..608006 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001733 ID=TCONS_00001733|Name=TCONS_00001733|organism=Clytia hemisphaerica|type=transcript|length=3199bp|location=Sequence derived from alignment at sc0000011:604808..608006 (Clytia hemisphaerica)
GgaatcttaaaaaaaagttttactataaaaatatcaaattattaTAACAG
AAATTACGGCtacaaatcttaaaaaaaaagttttactaaaaaaaatatca
aattatcaTAACAGAATTTACGActacaaatctttaaaaaaaagttttac
tataaaaatatcaaattatcaTAACAGAAATTACGGCtacaaatcttaaa
aaaaaagttttactataaaaatatcaaattattaTAACAGAATTTACGAc
tacaaatctttaaaaaaaagttttactataaaaatatcaaattatcaTAA
CAGAAATTACGGCtacaaatcttaaaaaaaaagttttactataaaaatat
caaattattaTAACAGAAATTACGGctacaaatctttaaaaaaaagtttt
actataaaaatatcaaattattaTAACAGAAATTACGGctacaaatcttt
aaaaaaaagttttactataaaaatatcaaattatttCAACAGAAAATACG
ACTACAAAAGCTGGCTCAAAATGTTCCACATTGTTTATTGTTGAAGGATT
CAATGTTGCAACAGAAGTGAAGATAATGTATTAAGTCTAATGTGgcctta
ttcatgatatgcaccactgcaatgacttcacgaaattatgcaacttttct
gtttttgttccacccaatacgtcactttttctgttgtttaagtgacgtat
tgggtggaaaattttaaaagttctcggaagactctccagtggtgcatatc
atgaatacaactACTCTAAGATCAATCTAAAAAAAACCATCACACAAATG
TTTAAAAATACCAGACTCTACATCAATGAACATTTTACACAATTACTATT
ATTTTCCGaatggaaaaaaatagtttgcacATTCAAATCTTTTAACAATG
TTGTTGCAAAGACACCATCATAATCCTCTTCTttaaaaatcagtttcatt
ggcTGATTTGGAAAGCGATCTTCTGTTAATGCCAGTCTCATACTATCAAT
TGTTTCAGATTCCCAATTAGTgattggaaaaaagaaattcaaaggaTCCT
CATTGATTTTCTGAATCACAATCTTGATTTTCTTGATAACAACAATTTTG
TAGGTACCATTTTGTTTTACTTGCCAAATCTGCTGGTCGTTCAATAGCGG
TTTAATTCTCTGGATATCATGCAAATTAACAAGATCAAAATGAGATTCTG
GGACACTTATCAATCCACTAACGACTTCTTTCAATTGTAGAATAGTAGCA
GTTTCAGCAATCTGGATTTTATTTTCTTGTATGTTGAAACTAGCATCCAG
ATCAACGGTAACTACTTCAGGAGTGCTGACAATCAATAATACAGATATCT
CATCATTCATCACCAAATCATTCTCAAGTAAAAATTCCATTAATTGAATT
TCCTCTTTGAGCTCCATGTTGTCGAACAAGATCTTTTGCATGTGCTTAGG
TATCATTTTTTCTGTTTGAATGACTTCCATAAGCTCAGATATGTTTCTGA
TTTCGGTTATTCCAGCATCTATCGTTATAATTTCTGTTAGAAGCTTGACA
TTGATTCTCCTTAAAAGAgggatatttttttctttgcaaactTCTTGAAT
CTTTGTGTTTTTGGTAGGACTGATCAGCATATTAACATGTAAttcatttg
aaaaatgttttccctCAAACAGTAAATTGTACAGATTATCCGTACTTTTC
AGCAGGCAACTTTGGTAGCTTAATTCAATGATCTTCCAATCATCAAAGTT
GAGTGTAGATGCAATATCTTTCTTAAGTTTCTCAATACTGAGATCCATTG
AAAAATTTCCCACAATTTCTTCATTATTTGGATGTAATACAACAGCATTG
TTTATTGTGTTTAGATTAAGAGATGAAGCGTTTTCCACAAGGTCACATTC
AGTCTGGACATCAATTCTAATTGCAAAATCGACATACACTATTTCATCTC
TTGAAATTGAACCATCCCAATATTTAGAATATATTTccattgaatttttc
aaatgttttcccTTCCAAAAGAGCACCTGTTTAGATATTGGTATTTGGTA
ATTCTCTTCTATAAATCTTTCCAAACCATCCTCTGCATAACCATTCTCAA
AATAATACGTAAACAACTTCCTTTTGTCTTTTGGATTGACAATATTTATA
GGATTCATCATAGATAAACCGTTTTCATTATAAAGCTTCAATAGCTCCTG
ATTATCAGTACCAAAAATAAATACAGATATTATGTAAGGATCTGTAGGAA
GTTCTGATGAAAATAAAGTATCCAATGATAAAGATTCTATAACAGAATTA
TTGAATACCAATAATTGTTCTTTTTCAGGAATACCGTACAATTTTTTAAT
ATAACTTTTGAGGTCATCAACGGCAAAGGAACCAACATCAACTATAGGAT
ATTCACAAAGAATATCTGAGCCCCTTCCAGGTAAGCTAATTTTAATAACA
GGAATAGCTATGTGAGTAAAATGTTGTTGAGCCTTAATGTAGTTAGCCTC
ATCTTGTCCTGTAAACAATGTTGTGTCAACCATTAAATATAGGTCAActa
tttttctcaaatactCTCCCTCAAAAAAAAGATCAACCAAAAACTGTCCA
TCATATTTTAGGATTTGCATATCCTTTTGTGTAGATCTTGCTGTTCTTTG
CGGCTGTTTATATGAAAACACTTGGTGTTCAGGCTTTATTTCAGTtctcc
aaaaaaccttttttttgaggTCAGTAAGTGTTAAATTCAATTTTGGTTGT
TCAATCTCATCAATAGTTCTTCTTCTGGTATCATATATATTGATGTGCTT
CAGGCGTTGATTTAATTTTGCATCATTAAATAATTGTAACAGATTTGAAT
CAGAAGTCCCTTTCATATAAAATTCTATTCTGTGTTGTTGTATTTCTCCA
ATCCTCATATAATATGAATATATTTCGTCAGTCAAAATTGTACTGGAGAA
AACAAAAACTTGTAAATCTCTTGGTATGTGAAATCTATATTCGATTAGCT
CCTGAAGATCTTGGAGTGACTTTGCCACATAATTTGTCACATGTAAAGTC
AAGTTAAATggattactcattttttcatctaaaaatataaaagaaaataa
ttaagAAACATACTTATGATGAAGATGCACTCAAAAAAGTTGATCAGCAT
ACATAATGGCTGAAGATGTATAAATGAGATGAAAATATATGACCTGAAA Coding sequence (CDS) from alignment at sc0000011:604808..608006 >TCONS_00001733 ID=TCONS_00001733|Name=TCONS_00001733|organism=Clytia hemisphaerica|type=CDS|length=2253bp|location=Sequence derived from alignment at sc0000011:604808..608006 (Clytia hemisphaerica)
CTACATCAATGAACATTTTACACAATTACTATTATTTTCCGaatggaaaa
aaatagtttgcacATTCAAATCTTTTAACAATGTTGTTGCAAAGACACCA
TCATAATCCTCTTCTttaaaaatcagtttcattggcTGATTTGGAAAGCG
ATCTTCTGTTAATGCCAGTCTCATACTATCAATTGTTTCAGATTCCCAAT
TAGTgattggaaaaaagaaattcaaaggaTCCTCATTGATTTTCTGAATC
ACAATCTTGATTTTCTTGATAACAACAATTTTGTAGGTACCATTTTGTTT
TACTTGCCAAATCTGCTGGTCGTTCAATAGCGGTTTAATTCTCTGGATAT
CATGCAAATTAACAAGATCAAAATGAGATTCTGGGACACTTATCAATCCA
CTAACGACTTCTTTCAATTGTAGAATAGTAGCAGTTTCAGCAATCTGGAT
TTTATTTTCTTGTATGTTGAAACTAGCATCCAGATCAACGGTAACTACTT
CAGGAGTGCTGACAATCAATAATACAGATATCTCATCATTCATCACCAAA
TCATTCTCAAGTAAAAATTCCATTAATTGAATTTCCTCTTTGAGCTCCAT
GTTGTCGAACAAGATCTTTTGCATGTGCTTAGGTATCATTTTTTCTGTTT
GAATGACTTCCATAAGCTCAGATATGTTTCTGATTTCGGTTATTCCAGCA
TCTATCGTTATAATTTCTGTTAGAAGCTTGACATTGATTCTCCTTAAAAG
AgggatatttttttctttgcaaactTCTTGAATCTTTGTGTTTTTGGTAG
GACTGATCAGCATATTAACATGTAAttcatttgaaaaatgttttccctCA
AACAGTAAATTGTACAGATTATCCGTACTTTTCAGCAGGCAACTTTGGTA
GCTTAATTCAATGATCTTCCAATCATCAAAGTTGAGTGTAGATGCAATAT
CTTTCTTAAGTTTCTCAATACTGAGATCCATTGAAAAATTTCCCACAATT
TCTTCATTATTTGGATGTAATACAACAGCATTGTTTATTGTGTTTAGATT
AAGAGATGAAGCGTTTTCCACAAGGTCACATTCAGTCTGGACATCAATTC
TAATTGCAAAATCGACATACACTATTTCATCTCTTGAAATTGAACCATCC
CAATATTTAGAATATATTTccattgaatttttcaaatgttttcccTTCCA
AAAGAGCACCTGTTTAGATATTGGTATTTGGTAATTCTCTTCTATAAATC
TTTCCAAACCATCCTCTGCATAACCATTCTCAAAATAATACGTAAACAAC
TTCCTTTTGTCTTTTGGATTGACAATATTTATAGGATTCATCATAGATAA
ACCGTTTTCATTATAAAGCTTCAATAGCTCCTGATTATCAGTACCAAAAA
TAAATACAGATATTATGTAAGGATCTGTAGGAAGTTCTGATGAAAATAAA
GTATCCAATGATAAAGATTCTATAACAGAATTATTGAATACCAATAATTG
TTCTTTTTCAGGAATACCGTACAATTTTTTAATATAACTTTTGAGGTCAT
CAACGGCAAAGGAACCAACATCAACTATAGGATATTCACAAAGAATATCT
GAGCCCCTTCCAGGTAAGCTAATTTTAATAACAGGAATAGCTATGTGAGT
AAAATGTTGTTGAGCCTTAATGTAGTTAGCCTCATCTTGTCCTGTAAACA
ATGTTGTGTCAACCATTAAATATAGGTCAActatttttctcaaatactCT
CCCTCAAAAAAAAGATCAACCAAAAACTGTCCATCATATTTTAGGATTTG
CATATCCTTTTGTGTAGATCTTGCTGTTCTTTGCGGCTGTTTATATGAAA
ACACTTGGTGTTCAGGCTTTATTTCAGTtctccaaaaaaccttttttttg
aggTCAGTAAGTGTTAAATTCAATTTTGGTTGTTCAATCTCATCAATAGT
TCTTCTTCTGGTATCATATATATTGATGTGCTTCAGGCGTTGATTTAATT
TTGCATCATTAAATAATTGTAACAGATTTGAATCAGAAGTCCCTTTCATA
TAAAATTCTATTCTGTGTTGTTGTATTTCTCCAATCCTCATATAATATGA
ATATATTTCGTCAGTCAAAATTGTACTGGAGAAAACAAAAACTTGTAAAT
CTCTTGGTATGTGAAATCTATATTCGATTAGCTCCTGAAGATCTTGGAGT
GACTTTGCCACATAATTTGTCACATGTAAAGTCAAGTTAAATggattact
cat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001733-exon-sc0000011-1491911889:604808..608006 | TCONS_00001733-exon-sc0000011-1491911889:604808..608006 | Clytia hemisphaerica | exon |
| TCONS_00001733-exon-sc0000011-1510915933:604808..608006 | TCONS_00001733-exon-sc0000011-1510915933:604808..608006 | Clytia hemisphaerica | exon |
| TCONS_00001733-exon-sc0000011-1575043694:604808..608006 | TCONS_00001733-exon-sc0000011-1575043694:604808..608006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:604808..608006 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000626 | Ubiquitin_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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