TCONS_00001731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001731
Unique NameTCONS_00001731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001731 ID=TCONS_00001731|Name=TCONS_00001731|organism=Clytia hemisphaerica|type=transcript|length=1233bp
tttttgtttttagctgggatctgggagtctgggctgaaggtgggaatttt
aggataaggtgggacctgaattttcaggtgggacctggaacccccttgca
cactatgcaGGTTAATAGGTTAATTTTTATATTAAATCTGGTCCATTAAA
TCATTCACTTTCTGAAATTACTCAAACttgtgaagaaaaaaatttggaat
cAGCAAAATGGAAAAAGAGAAatcttttcattgaatttttgactttgtcc
tcatcagaaaataaaaaattacattgattttaaaatctttgcaAAGTTTT
CTCTCAAACACAGTTCCAGTTGTTTGTCTCTTCCGGAACCAGATGAAGCT
ATTTGAAGAAACCAGATCAGACCAGCGGTCAATTGCTCAAACGTTTTTGA
AGCATCCAAGTTTCAGCAGCAATTGAACAAACTGACATGTGTCCATCCCA
ACCTCACCATCCcataggaattttttttggatagGGCTTGTAAAGTAGAG
AGTTCTGTTAAATACATAGCAGCAAAGAGCCGTGTCCTCTCAAATCTTGC
CTTTGATGATTCAAAAGCCGTTTTCTAAGGACAACGTAATCTCCCCGGAC
AGGTTGGTTACTTCTGTATCTGTATTCCAACCCATCATTCATCTGACTGG
TCGTTTCTTTTTCGTAATGATTTATTCGTTAACCAAGACAAAGTCAAATG
TTTTGGCTCAGTTGGGCAGGGACGCCAAACCCTGAAGAAGTTGTAAGACT
CCTACCGTACCCATCATCTCTGCTGATAGAATTATTAAATCTCAGTCATC
AGTTTTGCCAATTTAGAACATCAAATAGGTTGATAAACTTTGGGTAGTTC
TAATCTCTTCTTCTTGATGAGAAGTGATCACCTGAAAAAGCAACATTGGA
AGATATTatagatataaaaaaaaactgaaaatgttgAAGCAGCAAATatg
taaaacagaaaaaatgaagcgactgcttatgtagaaattttcgtcatctt
tcgtgacttcatcagcaAAGAATAcacaaaacttttttccaagTGTAAAc
taaattacaaaattgttctACTTCATGTTGTACCTTTTTATGTTTAGTTA
TATGtctgttttttcaattttaattccaGTTTGTATGTACCTCTTTGCTT
TTCATGGAATCATCATCTCTGTTTTTGATTCCTTATATTACAGGGATTCA
accaaatttgaaagttttcccATATAATTTCCC
Run BLAST on NCBI

transcript from alignment at sc0000011:523129..524361

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001731 ID=TCONS_00001731|Name=TCONS_00001731|organism=Clytia hemisphaerica|type=transcript|length=1233bp|location=Sequence derived from alignment at sc0000011:523129..524361 (Clytia hemisphaerica)
GGGAAATTATATgggaaaactttcaaatttggtTGAATCCCTGTAATATA AGGAATCAAAAACAGAGATGATGATTCCATGAAAAGCAAAGAGGTACATA CAAACtggaattaaaattgaaaaaacagaCATATAACTAAACATAAAAAG GTACAACATGAAGTagaacaattttgtaatttagTTTACActtggaaaaa agttttgtgTATTCTTtgctgatgaagtcacgaaagatgacgaaaatttc tacataagcagtcgcttcattttttctgttttacatATTTGCTGCTTcaa cattttcagtttttttttatatctatAATATCTTCCAATGTTGCTTTTTC AGGTGATCACTTCTCATCAAGAAGAAGAGATTAGAACTACCCAAAGTTTA TCAACCTATTTGATGTTCTAAATTGGCAAAACTGATGACTGAGATTTAAT AATTCTATCAGCAGAGATGATGGGTACGGTAGGAGTCTTACAACTTCTTC AGGGTTTGGCGTCCCTGCCCAACTGAGCCAAAACATTTGACTTTGTCTTG GTTAACGAATAAATCATTACGAAAAAGAAACGACCAGTCAGATGAATGAT GGGTTGGAATACAGATACAGAAGTAACCAACCTGTCCGGGGAGATTACGT TGTCCTTAGAAAACGGCTTTTGAATCATCAAAGGCAAGATTTGAGAGGAC ACGGCTCTTTGCTGCTATGTATTTAACAGAACTCTCTACTTTACAAGCCc tatccaaaaaaaattcctatgGGATGGTGAGGTTGGGATGGACACATGTC AGTTTGTTCAATTGCTGCTGAAACTTGGATGCTTCAAAAACGTTTGAGCA ATTGACCGCTGGTCTGATCTGGTTTCTTCAAATAGCTTCATCTGGTTCCG GAAGAGACAAACAACTGGAACTGTGTTTGAGAGAAAACTTtgcaaagatt ttaaaatcaatgtaattttttattttctgatgaggacaaagtcaaaaatt caatgaaaagatTTCTCTTTTTCCATTTTGCTgattccaaatttttttct tcacaaGTTTGAGTAATTTCAGAAAGTGAATGATTTAATGGACCAGATTT AATATAAAAATTAACCTATTAACCtgcatagtgtgcaagggggttccagg tcccacctgaaaattcaggtcccaccttatcctaaaattcccaccttcag cccagactcccagatcccagctaaaaacaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000917XLOC_000917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001731-exon-sc0000011-1491911889:523129..524361TCONS_00001731-exon-sc0000011-1491911889:523129..524361Clytia hemisphaericaexon
TCONS_00001731-exon-sc0000011-1510915933:523129..524361TCONS_00001731-exon-sc0000011-1510915933:523129..524361Clytia hemisphaericaexon
TCONS_00001731-exon-sc0000011-1575043694:523129..524361TCONS_00001731-exon-sc0000011-1575043694:523129..524361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:523129..524361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.78938 0.729901 1.65364 1.75811 5.10705 3.9265 5.41864 4.56768 7.06001 4.4604 13.5041 10.5177 14.0231 7.83351 31.5391 37.8097 22.6267 18.3049 3.45084 8.52191 11.5241 12.1547 6.13932 7.88285 7.94613 11.9987 95.6071 102.847 1.84653 1.15957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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