TCONS_00001705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001705
Unique NameTCONS_00001705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001705 ID=TCONS_00001705|Name=TCONS_00001705|organism=Clytia hemisphaerica|type=transcript|length=706bp
TCTTGATGTCCACTATAGATAGAATCTTGTTGAGGGAATCTTACTCAgag
aatttttgtcaaattttcttttgcttttttataaCTCAAAACATTCAATG
CCATGGATATAATGAATATAAGGCATATAGATGGACTTTAGAATTGAGAA
TAACATTGTATATATTTCTTCGGAAAAAACACGATTTATCGGAATTTATT
GTAacaattactctcgggtacctaatagccgtccccccccccccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTCGGGTACctaataccccccccccccccccccgc
ttattaatttttgggaaaatgttttcgaaagttccctcttttgtcctaat
tctgctgtattagacTTCTTTTGAAAGGTTTTCAAgtcaggacattttta
ttccaacccccctgcttattaagttttgagttCTTTTCCAACTCCCCCaa
gcttattccaaacccccggctattaggtacccgagagtagtagATTACGA
GGTAGAAAGTTTTCGTTTTGCGCTATATTCTTTCTTGAATGAATCTAACC
ATAACTCTGTCAGTACTGCCCAGCTAAATTTCCTTCATTTAGGATGCATT
CGTTCAGCTGCCGGTAGTTTTTATTAAGGAACTTAGAATCGAAAATAATA
ATGTAG
Run BLAST on NCBI

transcript from alignment at sc0000011:73823..74528

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001705 ID=TCONS_00001705|Name=TCONS_00001705|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at sc0000011:73823..74528 (Clytia hemisphaerica)
CTACATTATTATTTTCGATTCTAAGTTCCTTAATAAAAACTACCGGCAGC
TGAACGAATGCATCCTAAATGAAGGAAATTTAGCTGGGCAGTACTGACAG
AGTTATGGTTAGATTCATTCAAGAAAGAATATAGCGCAAAACGAAAACTT
TCTACCTCGTAATctactactctcgggtacctaatagccgggggtttgga
ataagcttGGGGGAGTTGGAAAAGaactcaaaacttaataagcagggggg
ttggaataaaaatgtcctgacTTGAAAACCTTTCAAAAGAAgtctaatac
agcagaattaggacaaaagagggaactttcgaaaacattttcccaaaaat
taataagcggggggggggggggggggtattagGTACCCGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNggggggggggggacggctattaggtacccgagagtaat
tgtTACAATAAATTCCGATAAATCGTGTTTTTTCCGAAGAAATATATACA
ATGTTATTCTCAATTCTAAAGTCCATCTATATGCCTTATATTCATTATAT
CCATGGCATTGAATGTTTTGAGttataaaaaagcaaaagaaaatttgaca
aaaattctcTGAGTAAGATTCCCTCAACAAGATTCTATCTATAGTGGACA
TCAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000892XLOC_000892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001705-exon-sc0000011-1491911889:73823..74528TCONS_00001705-exon-sc0000011-1491911889:73823..74528Clytia hemisphaericaexon
TCONS_00001705-exon-sc0000011-1510915933:73823..74528TCONS_00001705-exon-sc0000011-1510915933:73823..74528Clytia hemisphaericaexon
TCONS_00001705-exon-sc0000011-1575043694:73823..74528TCONS_00001705-exon-sc0000011-1575043694:73823..74528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:73823..74528 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145261	0.0719944	0.387374	0.270237	0.529676	0.418154	0.0935241	0.347464	0.182672	0.163995	0.0796988	0.240317	1.40624	1.29987	3.72214	3.39981	1.71803	0.730363	1.90666	3.47317	0.0716298	0	0.662775	0.685115	0.51437	0.149864	1.01135	2.50746	0.186521	0.181033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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