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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001703 ID=TCONS_00001703|Name=TCONS_00001703|organism=Clytia hemisphaerica|type=transcript|length=2733bp
TTATTCATTCTATAAATACTTAAACAAAGTCATAAAAAttagataaataa
aaaaattacagatCACTGAATTCTAAAAACTAAACACTCACATCTAGAAT
CTTATAAGAGTACACACTCaaagaattaaaattaattttcttgcaCCCTA
ACTTTTCCATCGGTTAAAAAGCAACAGTTGAGTTCTAGATTTATTATTAA
CAAAGGctaaaaatggctgaaattctAGCTCTAGACCGTTAAAAACACAT
ATCAGAAATATACAGATTCCAattaaaacttggaaaatttCGAAgattaa
aatttataatttatttacaCGAACATAAACAATTAAAGGCAAAAgtatta
tttcattttcagggGGTATATGTTCTTGTTTGCTTCGAAAATTGACAATA
ACAATCAGGGTTCGTACAATGAGGTGCGTTAGACATGTGATGGTGGCCAC
TTGTGCCAGGCTGTGGTGGCCCAGCATAGTTCTGATGTGGCGAATAATGT
TGAATACCGGCGGGTGGTTGTTGAAGATGGGTGGAAGGTGGGGCGgagaa
attttgattgaaattacCAACCGATGATGAATGATAGTATCCTTGAGGGG
ATCCAGGGTGCATGTTTGTAGCGGGCGGTGCTGTAGCCGGATGGGGCGGA
TAGTGGTAGAAGGGCGATGGTTGTTGGTGCATTTCTGGGTAGACATCATG
CTCTCGAGCGAACTGGTACCCTGCAAGCATGACCGGATCAATCCATTGTA
AGCCACGTGGCCTTTTCCGTAATGCCCGACGTTTCCGGTAATCGCCTTTG
GAGAAGCTTTCATAATAGGTCGGATGAATTGCCCAGTTGCAGCTACGGCC
ATTTTCCGGTCGATGTAACTTGATGAAGCAGTCATTTAATGAGAGCGTGT
GACGAACACAATTTCGCCATCCGGTACCACGCTTTTCCAATGAAGGAAAA
TGTTTCTCCATATATTCATAAATGTCTGACAAAGTACTTTTACtactttc
tttctttaaaatagCTTGTGCAATCATAGCTGTGTAGCTGGGTAGACCAT
TCTCTGTTTGTGGCTGACCGTTATTGGTACCAGTTTTAGTAGTATTGTCT
TTGGATATGGGTTCGTTTTTAACATCTTGTGTCTTTTCAGGTGTTTTTGA
TTCAGTTTTGTTCATTTGTTGTTGCATGATTTTCTGGACTTCGTTTTTCG
TACTGTTTTCAGGCGATTGGTCTTGTTTTGGCTGTTGCATCATCTCACCG
CCCATTAGACCCGTCGAAGTAGGGCGGGCGCCTTCCATCATATGATGGTG
TGGCGTCGGTATAAAGTTATTATCAACATAGTTGGGTTGACTATAACTTC
TTGGTCTGTTGGCATCATCATGAAAGTCCATTCTTAGTTCAGGTTTATAT
GTGGGTGGTGTTTGAAAACCTGTAGTAGACATTGTGTTTTGGAATGCAGA
CGGCGGAGGCTGGTTAAGTGTAGCTGATGGTAGGGGAGGCTGTGACAAAT
TGGCGACCGTTTGATTGGGAGGTGTTGGATAGCCTCTGGTGTCAGGTGGC
AAAGTCATTGAAACGTTAACTTGTTCTTGTGCGTTGAGATCTGATTTACG
ATAGAAATTCGCAGCATTTCGAAACTGATTTCCATAAGGATCAAAACGTT
GGAAATCCTGTTGATGGGCGGTCGATGGTGGAATGGCGGAATCATAAGGC
GTAAATTTGTAAGGATCTGTGGACACAGTGAAACGGTGGACACCAGAAGC
ATCAGTATTAGTTGTAGGGGCACCAGTTGGTATGGTGCGATCGGTTAAGA
AATTATATCCATTGGTTGTGATAGCAACTGGCGAAGTGCGTTCACCTGAG
ATAGCAGCGTGTGGCCAGCGAAAAGTGTTTTCTGTACTCAGGTCATTTGT
AGATGTATTTGGGACTGAGCCTCCTCCAACACGTCCTCCATGGAATGGAG
TTGGTAAATATTCAGAAGTAACAACCGTATTCATGATTCCAAATTGTTTA
TCTTAATCATcaacaaaatgttcttaacatcaACAACAAACAGCAAGATA
GTGAAAGATATCACACAAACAATATGTCATCCGAATGTATTCTTTCCTGT
TCCTCACTCTTTCAAAAGATTATTTGTTTTCGTAAATCTCAAACCAGCAG
ATTTGGCGTTTTGGCATAAAAACACGGTATACAAGCAATAAAAAGCGTCC
AATgaaagaaaggaaagaaaaactaTCGTCcaaatttatttgaaagcttt
ttcAATGTGATTGAATTGAAAATCTGAAGATGTTTTTGTAATCGAATCCA
AGGCTTGTCAATAACATTTACTGTATCTCGACGAGGCTGCTTGCAAACAC
ACTCACTTGTTTAATAAAGAGATCCAACTTATAAATCATCATTTAATAAT
GTTAAAATATTGACCTCCTTATTCGTTTCGCCTTTGCAATTTGTACCGCA
GCCAATCAGAGAAGAGCAGTTCAGAATTGAGCCAATTAGATTGCAATAGG
ATTTAAGaagaaccaatcagattgcacaAAAGTGCTCTCATTCGGTAGAA
TatgaaattgaaatatctttagggGGTGTAACCTTGAATGGCAGACAGTT
TggttcaaactattttttcatttgtATCGTTGAAACAACTTGAACAGTAT
TGAGTATAGAGTTATTCTCccttaaaaatctttctttcatgcatcaaaca
aaatttaattttgttttcagACCTTTCGTCTCA Run BLAST on NCBI protein sequence of TCONS_00001703-protein >TCONS_00001703-protein ID=TCONS_00001703-protein|Name=TCONS_00001703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MNTVVTSEYLPTPFHGGRVGGGSVPNTSTNDLSTENTFRWPHAAISGERT
SPVAITTNGYNFLTDRTIPTGAPTTNTDASGVHRFTVSTDPYKFTPYDSA
IPPSTAHQQDFQRFDPYGNQFRNAANFYRKSDLNAQEQVNVSMTLPPDTR
GYPTPPNQTVANLSQPPLPSATLNQPPPSAFQNTMSTTGFQTPPTYKPEL
RMDFHDDANRPRSYSQPNYVDNNFIPTPHHHMMEGARPTSTGLMGGEMMQ
QPKQDQSPENSTKNEVQKIMQQQMNKTESKTPEKTQDVKNEPISKDNTTK
TGTNNGQPQTENGLPSYTAMIAQAILKKESSKSTLSDIYEYMEKHFPSLE
KRGTGWRNCVRHTLSLNDCFIKLHRPENGRSCNWAIHPTYYESFSKGDYR
KRRALRKRPRGLQWIDPVMLAGYQFAREHDVYPEMHQQPSPFYHYPPHPA
TAPPATNMHPGSPQGYYHSSSVGNFNQNFSAPPSTHLQQPPAGIQHYSPH
QNYAGPPQPGTSGHHHMSNAPHCTNPDCYCQFSKQTRTYTP Run BLAST on NCBI transcript from alignment at sc0000011:53010..55742 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001703 ID=TCONS_00001703|Name=TCONS_00001703|organism=Clytia hemisphaerica|type=transcript|length=2733bp|location=Sequence derived from alignment at sc0000011:53010..55742 (Clytia hemisphaerica)
TGAGACGAAAGGTctgaaaacaaaattaaattttgtttgatgcatgaaag
aaagatttttaaggGAGAATAACTCTATACTCAATACTGTTCAAGTTGTT
TCAACGATacaaatgaaaaaatagtttgaaccAAACTGTCTGCCATTCAA
GGTTACACCccctaaagatatttcaatttcatATTCTACCGAATGAGAGC
ACTTTtgtgcaatctgattggttcttCTTAAATCCTATTGCAATCTAATT
GGCTCAATTCTGAACTGCTCTTCTCTGATTGGCTGCGGTACAAATTGCAA
AGGCGAAACGAATAAGGAGGTCAATATTTTAACATTATTAAATGATGATT
TATAAGTTGGATCTCTTTATTAAACAAGTGAGTGTGTTTGCAAGCAGCCT
CGTCGAGATACAGTAAATGTTATTGACAAGCCTTGGATTCGATTACAAAA
ACATCTTCAGATTTTCAATTCAATCACATTgaaaaagctttcaaataaat
ttgGACGAtagtttttctttcctttctttcATTGGACGCTTTTTATTGCT
TGTATACCGTGTTTTTATGCCAAAACGCCAAATCTGCTGGTTTGAGATTT
ACGAAAACAAATAATCTTTTGAAAGAGTGAGGAACAGGAAAGAATACATT
CGGATGACATATTGTTTGTGTGATATCTTTCACTATCTTGCTGTTTGTTG
TtgatgttaagaacattttgttgATGATTAAGATAAACAATTTGGAATCA
TGAATACGGTTGTTACTTCTGAATATTTACCAACTCCATTCCATGGAGGA
CGTGTTGGAGGAGGCTCAGTCCCAAATACATCTACAAATGACCTGAGTAC
AGAAAACACTTTTCGCTGGCCACACGCTGCTATCTCAGGTGAACGCACTT
CGCCAGTTGCTATCACAACCAATGGATATAATTTCTTAACCGATCGCACC
ATACCAACTGGTGCCCCTACAACTAATACTGATGCTTCTGGTGTCCACCG
TTTCACTGTGTCCACAGATCCTTACAAATTTACGCCTTATGATTCCGCCA
TTCCACCATCGACCGCCCATCAACAGGATTTCCAACGTTTTGATCCTTAT
GGAAATCAGTTTCGAAATGCTGCGAATTTCTATCGTAAATCAGATCTCAA
CGCACAAGAACAAGTTAACGTTTCAATGACTTTGCCACCTGACACCAGAG
GCTATCCAACACCTCCCAATCAAACGGTCGCCAATTTGTCACAGCCTCCC
CTACCATCAGCTACACTTAACCAGCCTCCGCCGTCTGCATTCCAAAACAC
AATGTCTACTACAGGTTTTCAAACACCACCCACATATAAACCTGAACTAA
GAATGGACTTTCATGATGATGCCAACAGACCAAGAAGTTATAGTCAACCC
AACTATGTTGATAATAACTTTATACCGACGCCACACCATCATATGATGGA
AGGCGCCCGCCCTACTTCGACGGGTCTAATGGGCGGTGAGATGATGCAAC
AGCCAAAACAAGACCAATCGCCTGAAAACAGTACGAAAAACGAAGTCCAG
AAAATCATGCAACAACAAATGAACAAAACTGAATCAAAAACACCTGAAAA
GACACAAGATGTTAAAAACGAACCCATATCCAAAGACAATACTACTAAAA
CTGGTACCAATAACGGTCAGCCACAAACAGAGAATGGTCTACCCAGCTAC
ACAGCTATGATTGCACAAGctattttaaagaaagaaagtaGTAAAAGTAC
TTTGTCAGACATTTATGAATATATGGAGAAACATTTTCCTTCATTGGAAA
AGCGTGGTACCGGATGGCGAAATTGTGTTCGTCACACGCTCTCATTAAAT
GACTGCTTCATCAAGTTACATCGACCGGAAAATGGCCGTAGCTGCAACTG
GGCAATTCATCCGACCTATTATGAAAGCTTCTCCAAAGGCGATTACCGGA
AACGTCGGGCATTACGGAAAAGGCCACGTGGCTTACAATGGATTGATCCG
GTCATGCTTGCAGGGTACCAGTTCGCTCGAGAGCATGATGTCTACCCAGA
AATGCACCAACAACCATCGCCCTTCTACCACTATCCGCCCCATCCGGCTA
CAGCACCGCCCGCTACAAACATGCACCCTGGATCCCCTCAAGGATACTAT
CATTCATCATCGGTTGgtaatttcaatcaaaatttctcCGCCCCACCTTC
CACCCATCTTCAACAACCACCCGCCGGTATTCAACATTATTCGCCACATC
AGAACTATGCTGGGCCACCACAGCCTGGCACAAGTGGCCACCATCACATG
TCTAACGCACCTCATTGTACGAACCCTGATTGTTATTGTCAATTTTCGAA
GCAAACAAGAACATATACCccctgaaaatgaaataatacTTTTGCCTTTA
ATTGTTTATGTTCGtgtaaataaattataaattttaatcTTCGaaatttt
ccaagttttaatTGGAATCTGTATATTTCTGATATGTGTTTTTAACGGTC
TAGAGCTagaatttcagccatttttagCCTTTGTTAATAATAAATCTAGA
ACTCAACTGTTGCTTTTTAACCGATGGAAAAGTTAGGGtgcaagaaaatt
aattttaattctttGAGTGTGTACTCTTATAAGATTCTAGATGTGAGTGT
TTAGTTTTTAGAATTCAGTGatctgtaatttttttatttatctaaTTTTT
ATGACTTTGTTTAAGTATTTATAGAATGAATAA Coding sequence (CDS) from alignment at sc0000011:53010..55742 >TCONS_00001703 ID=TCONS_00001703|Name=TCONS_00001703|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at sc0000011:53010..55742 (Clytia hemisphaerica)
ATGAATACGGTTGTTACTTCTGAATATTTACCAACTCCATTCCATGGAGG
ACGTGTTGGAGGAGGCTCAGTCCCAAATACATCTACAAATGACCTGAGTA
CAGAAAACACTTTTCGCTGGCCACACGCTGCTATCTCAGGTGAACGCACT
TCGCCAGTTGCTATCACAACCAATGGATATAATTTCTTAACCGATCGCAC
CATACCAACTGGTGCCCCTACAACTAATACTGATGCTTCTGGTGTCCACC
GTTTCACTGTGTCCACAGATCCTTACAAATTTACGCCTTATGATTCCGCC
ATTCCACCATCGACCGCCCATCAACAGGATTTCCAACGTTTTGATCCTTA
TGGAAATCAGTTTCGAAATGCTGCGAATTTCTATCGTAAATCAGATCTCA
ACGCACAAGAACAAGTTAACGTTTCAATGACTTTGCCACCTGACACCAGA
GGCTATCCAACACCTCCCAATCAAACGGTCGCCAATTTGTCACAGCCTCC
CCTACCATCAGCTACACTTAACCAGCCTCCGCCGTCTGCATTCCAAAACA
CAATGTCTACTACAGGTTTTCAAACACCACCCACATATAAACCTGAACTA
AGAATGGACTTTCATGATGATGCCAACAGACCAAGAAGTTATAGTCAACC
CAACTATGTTGATAATAACTTTATACCGACGCCACACCATCATATGATGG
AAGGCGCCCGCCCTACTTCGACGGGTCTAATGGGCGGTGAGATGATGCAA
CAGCCAAAACAAGACCAATCGCCTGAAAACAGTACGAAAAACGAAGTCCA
GAAAATCATGCAACAACAAATGAACAAAACTGAATCAAAAACACCTGAAA
AGACACAAGATGTTAAAAACGAACCCATATCCAAAGACAATACTACTAAA
ACTGGTACCAATAACGGTCAGCCACAAACAGAGAATGGTCTACCCAGCTA
CACAGCTATGATTGCACAAGctattttaaagaaagaaagtaGTAAAAGTA
CTTTGTCAGACATTTATGAATATATGGAGAAACATTTTCCTTCATTGGAA
AAGCGTGGTACCGGATGGCGAAATTGTGTTCGTCACACGCTCTCATTAAA
TGACTGCTTCATCAAGTTACATCGACCGGAAAATGGCCGTAGCTGCAACT
GGGCAATTCATCCGACCTATTATGAAAGCTTCTCCAAAGGCGATTACCGG
AAACGTCGGGCATTACGGAAAAGGCCACGTGGCTTACAATGGATTGATCC
GGTCATGCTTGCAGGGTACCAGTTCGCTCGAGAGCATGATGTCTACCCAG
AAATGCACCAACAACCATCGCCCTTCTACCACTATCCGCCCCATCCGGCT
ACAGCACCGCCCGCTACAAACATGCACCCTGGATCCCCTCAAGGATACTA
TCATTCATCATCGGTTGgtaatttcaatcaaaatttctcCGCCCCACCTT
CCACCCATCTTCAACAACCACCCGCCGGTATTCAACATTATTCGCCACAT
CAGAACTATGCTGGGCCACCACAGCCTGGCACAAGTGGCCACCATCACAT
GTCTAACGCACCTCATTGTACGAACCCTGATTGTTATTGTCAATTTTCGA
AGCAAACAAGAACATATACCccctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001703-exon-sc0000011-1491911889:53010..55742 | TCONS_00001703-exon-sc0000011-1491911889:53010..55742 | Clytia hemisphaerica | exon |
| TCONS_00001703-exon-sc0000011-1510915933:53010..55742 | TCONS_00001703-exon-sc0000011-1510915933:53010..55742 | Clytia hemisphaerica | exon |
| TCONS_00001703-exon-sc0000011-1575043694:53010..55742 | TCONS_00001703-exon-sc0000011-1575043694:53010..55742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:53010..55742 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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