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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001696 ID=TCONS_00001696|Name=TCONS_00001696|organism=Clytia hemisphaerica|type=transcript|length=905bp
TATAACAGCAGAGGACAAATGTGGACGACCTTTAGGTTTACAATTTGATC
GTGACCAGGAAAATCTCATCATTTGTGACGCTTACCTTGGTTTACTAAAA
TACAACTTAAAAGCTGGGGAACTTACAACATTAATTTCTGCTGCCAAAGG
AGTCAACGATGTTCCATTTAAATTTGTCAATCACTTAACCATCTCCAGTA
GCAATAAAGTCTATTTTACAGACTCAAGTTGGAAATGGCAGAGGCGTGAT
TTTCCATACATGATCTTGGAGGGTAGTGGTCAAGGGCGTTTAATTAGTTA
TGATATAGAGACAAAACAAAGTGAAGTACTGATGGATGGGTTGTTTTTCC
CAAATGGAATCGCGTTATCTCCCGATGAGGAATTTGTTGTAGTGTGTGAA
ACCACAGCTAGTCGAATCATGAGGTTATTTTTGAAAGGCTCAAGAAAAGG
AATTTATGATCTCTTCTCCGACAATCTTCCAGGGGCGCCTGATAATATCC
GCCCCTCTAAAGATGGCGGTTATTGGGTAGCCTTGCCATCTATCAGAAAA
TGGCCGTTCTCGTTCTTGGATTCGGTTGGACCTTATCCTAACCTGAAATC
AGCTATCGCTAAGCTTCTCCCTAAAGAGACGTTCCACGGTCTAATCAAGA
AATACGGGTTGATGATTAAGCTTGATTACTACGGCGATATCATTAAGAGT
TATCACGATCCCGATGGTTCAGTCATAACGCATATTTCCGAAGTTTATGA
AGATCCTAACGATCATAACATCTTGTATTTTGGATCCTTCAAAAATGACT
TTATTGGAAAATTAAGATTGAATAGTAAGCAAACTGACCTTTGAAAATCT
ACATTTGCTTTTTGACTTGGCTTTGTTGATGGAGTTTTGGCTACAGACTT
TTTGC Run BLAST on NCBI transcript from alignment at sc0000011:862173..863805- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001696 ID=TCONS_00001696|Name=TCONS_00001696|organism=Clytia hemisphaerica|type=transcript|length=1633bp|location=Sequence derived from alignment at sc0000011:862173..863805- (Clytia hemisphaerica)
TATAACAGCAGAGGACAAATGTGGACGACCTTTAGGTTTACAATTTGATC
GTGACCAGGAAAATCTCATCATTTGTGACGCTTACCTTGGTTTACTAAAA
TACAACTTAAAAGCTGGGGAACTTACAACATTAATTTCTGCTGCCAAAGG
AGTCAACGATGTTCCATTTAAATTTGTCAATCACTTAACCATCTCCAGTA
GCAATAAAGTCTATTTTACAGACTCAAGTTGGAAATGGCAGAGGCGTGAT
TTTCCATACATGATCTTGGAGGGTAGTGGTCAAGGGCGTTTAATTAGTTA
TGATATAGAGACAAAACAAAGTGAAGTACTGATGGATGGGTTGTTTTTCC
CAAATGGAATCGCGTTATCTCCCGATGAGGAATTTGTTGTAGTGTGTGAA
ACCACAGCTAGTCGAATCATGAGGTATAGTTTATTCTTGTGCTTTTTTGT
TTGAATTTGCCCTGAAAATATCAAATAGAACTATTTTCAACATTCTTTGC
ATTCTTTGAGGTAGCTAAGGGAAATATCTATTCTCGAGTTTGAGGAGTTT
ACTATCTCTTTTACTCTATTCCTTACTGCAGTGAAATTTAAACAATTCAA
TTGGGGTTAATTAGACCCACTTTGACACTGAGAAAGGGTTGATTTTAGTT
GCATTCATCATGAAAGTTCTGATCTTATTGACAAATTCACAACTCTGAAA
ATCCTTCCAAATTGGGCAGTCCGTAGTTTTTACAAGGAGTGTTGGTCAGA
AAAGGTAATTTGTATGTATTGCAGAAATAAACAGCGAAGCATTGACTTAT
TACTCTTTACTCTCATTCTAGGTTATTTTTGAAAGGCTCAAGAAAAGGAA
TTTATGATCTCTTCTCCGACAATCTTCCAGGGGCGCCTGATAATATCCGC
CCCTCTAAAGATGGCGGTTATTGGGTAGCCTTGCCATCTATCAGAAAATG
GCCGTTCTCGTTCTTGGATTCGGTTGGACCTTATCCTAACCTGAAATCAG
CTATCGCTAAGGTATGAGAAAAATCTGATATCATAATCAACTCTCTGTGG
TATCTTGAATCACTAGCCTTCTNAGTTGGACCTTATCCCAATTTGAAATC
AGCTATTGCTAAGGTATGAGAAAAATTTGATATTTTTTCTGTGGTATCTT
CAATAACCGACCTTCTTTAATAAATAGCGTCGTCGAGACCACTCGATTCC
TTTATAAGATGATAGATATCTCAGTTGAGATAATTATCTTTGTAATCATT
TCAAAATGAGACAAGTGTTGTTTTTGGCGTAAAGTTTAAAACCTCTATCC
AAAATATATTTCAATATGCCAATTTGTTTTCTCATTTGCAGCTTCTCCCT
AAAGAGACGTTCCACGGTCTAATCAAGAAATACGGGTTGATGATTAAGCT
TGATTACTACGGCGATATCATTAAGAGTTATCACGATCCCGATGGTTCAG
TCATAACGCATATTTCCGAAGTTTATGAAGATCCTAACGATCATAACATC
TTGTATTTTGGATCCTTCAAAAATGACTTTATTGGAAAATTAAGATTGAA
TAGTAAGCAAACTGACCTTTGAAAATCTACATTTGCTTTTTGACTTGGCT
TTGTTGATGGAGTTTTGGCTACAGACTTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001696-exon-sc0000011-1575043694:863383..863805 | TCONS_00001696-exon-sc0000011-1575043694:863383..863805 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1575043694:862795..862984 | TCONS_00001696-exon-sc0000011-1575043694:862795..862984 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1575043694:862173..862464 | TCONS_00001696-exon-sc0000011-1575043694:862173..862464 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1510915933:863383..863805 | TCONS_00001696-exon-sc0000011-1510915933:863383..863805 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1510915933:862795..862984 | TCONS_00001696-exon-sc0000011-1510915933:862795..862984 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1510915933:862173..862464 | TCONS_00001696-exon-sc0000011-1510915933:862173..862464 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1491911889:863383..863805 | TCONS_00001696-exon-sc0000011-1491911889:863383..863805 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1491911889:862795..862984 | TCONS_00001696-exon-sc0000011-1491911889:862795..862984 | Clytia hemisphaerica | exon |
| TCONS_00001696-exon-sc0000011-1491911889:862173..862464 | TCONS_00001696-exon-sc0000011-1491911889:862173..862464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:862173..863805 - |
Blast
BLAST of TCONS_00001696 vs. Swiss-Prot (Human)
Match: APMAP (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2) HSP 1 Score: 233.417 bits (594), Expect = 8.179e-73 Identity = 125/274 (45.62%), Postives = 175/274 (63.87%), Query Frame = 2
Query: 11 EDKCGRPLGLQFDRDQENLIICDAYLGLLKYNLKAGELTTLISAAKGVNDVPFKFVNHLTISS-SNKVYFTDSSWKWQRRDFPYMILEGSGQGRLISYDIETKQSEVLMDGLFFPNGIALSPDEEFVVVCETTASRIMRLFLKGSRKGIYDLFSDNLPGAPDNIRPSKDGGYWVALPSIRKWP-FSFLDSVGPYPNLKSAIAKLLPKETFHGLIKKYGLMIKLDYYGDIIKSYHDPDGSVITHISEVYEDPNDHNILYFGSFKNDFIGKLRLNS 826
E CGRPLG++ + L + DAY GL + N E+ L+S+ + FVN LT++ K+YFTDSS KWQRRD+ +++EG+ GRL+ YD T++ +VL+D L FPNG+ LSP E+FV+V ETT +RI R+++ G KG DLF +N+PG PDNIRPS GGYWV + +IR P FS LD + P +K I KL +ET + +Y L+++L G +S HDPDG V T+ISEV+E + H LY GSF++ F+ +L L +
Sbjct: 146 EPVCGRPLGIRAGPNG-TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEH-DGH--LYLGSFRSPFLCRLSLQA 415
The following BLAST results are available for this feature:
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