TCONS_00001696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001696
Unique NameTCONS_00001696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001696 ID=TCONS_00001696|Name=TCONS_00001696|organism=Clytia hemisphaerica|type=transcript|length=905bp
TATAACAGCAGAGGACAAATGTGGACGACCTTTAGGTTTACAATTTGATC
GTGACCAGGAAAATCTCATCATTTGTGACGCTTACCTTGGTTTACTAAAA
TACAACTTAAAAGCTGGGGAACTTACAACATTAATTTCTGCTGCCAAAGG
AGTCAACGATGTTCCATTTAAATTTGTCAATCACTTAACCATCTCCAGTA
GCAATAAAGTCTATTTTACAGACTCAAGTTGGAAATGGCAGAGGCGTGAT
TTTCCATACATGATCTTGGAGGGTAGTGGTCAAGGGCGTTTAATTAGTTA
TGATATAGAGACAAAACAAAGTGAAGTACTGATGGATGGGTTGTTTTTCC
CAAATGGAATCGCGTTATCTCCCGATGAGGAATTTGTTGTAGTGTGTGAA
ACCACAGCTAGTCGAATCATGAGGTTATTTTTGAAAGGCTCAAGAAAAGG
AATTTATGATCTCTTCTCCGACAATCTTCCAGGGGCGCCTGATAATATCC
GCCCCTCTAAAGATGGCGGTTATTGGGTAGCCTTGCCATCTATCAGAAAA
TGGCCGTTCTCGTTCTTGGATTCGGTTGGACCTTATCCTAACCTGAAATC
AGCTATCGCTAAGCTTCTCCCTAAAGAGACGTTCCACGGTCTAATCAAGA
AATACGGGTTGATGATTAAGCTTGATTACTACGGCGATATCATTAAGAGT
TATCACGATCCCGATGGTTCAGTCATAACGCATATTTCCGAAGTTTATGA
AGATCCTAACGATCATAACATCTTGTATTTTGGATCCTTCAAAAATGACT
TTATTGGAAAATTAAGATTGAATAGTAAGCAAACTGACCTTTGAAAATCT
ACATTTGCTTTTTGACTTGGCTTTGTTGATGGAGTTTTGGCTACAGACTT
TTTGC
Run BLAST on NCBI

transcript from alignment at sc0000011:862173..863805-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001696 ID=TCONS_00001696|Name=TCONS_00001696|organism=Clytia hemisphaerica|type=transcript|length=1633bp|location=Sequence derived from alignment at sc0000011:862173..863805- (Clytia hemisphaerica)
TATAACAGCAGAGGACAAATGTGGACGACCTTTAGGTTTACAATTTGATC GTGACCAGGAAAATCTCATCATTTGTGACGCTTACCTTGGTTTACTAAAA TACAACTTAAAAGCTGGGGAACTTACAACATTAATTTCTGCTGCCAAAGG AGTCAACGATGTTCCATTTAAATTTGTCAATCACTTAACCATCTCCAGTA GCAATAAAGTCTATTTTACAGACTCAAGTTGGAAATGGCAGAGGCGTGAT TTTCCATACATGATCTTGGAGGGTAGTGGTCAAGGGCGTTTAATTAGTTA TGATATAGAGACAAAACAAAGTGAAGTACTGATGGATGGGTTGTTTTTCC CAAATGGAATCGCGTTATCTCCCGATGAGGAATTTGTTGTAGTGTGTGAA ACCACAGCTAGTCGAATCATGAGGTATAGTTTATTCTTGTGCTTTTTTGT TTGAATTTGCCCTGAAAATATCAAATAGAACTATTTTCAACATTCTTTGC ATTCTTTGAGGTAGCTAAGGGAAATATCTATTCTCGAGTTTGAGGAGTTT ACTATCTCTTTTACTCTATTCCTTACTGCAGTGAAATTTAAACAATTCAA TTGGGGTTAATTAGACCCACTTTGACACTGAGAAAGGGTTGATTTTAGTT GCATTCATCATGAAAGTTCTGATCTTATTGACAAATTCACAACTCTGAAA ATCCTTCCAAATTGGGCAGTCCGTAGTTTTTACAAGGAGTGTTGGTCAGA AAAGGTAATTTGTATGTATTGCAGAAATAAACAGCGAAGCATTGACTTAT TACTCTTTACTCTCATTCTAGGTTATTTTTGAAAGGCTCAAGAAAAGGAA TTTATGATCTCTTCTCCGACAATCTTCCAGGGGCGCCTGATAATATCCGC CCCTCTAAAGATGGCGGTTATTGGGTAGCCTTGCCATCTATCAGAAAATG GCCGTTCTCGTTCTTGGATTCGGTTGGACCTTATCCTAACCTGAAATCAG CTATCGCTAAGGTATGAGAAAAATCTGATATCATAATCAACTCTCTGTGG TATCTTGAATCACTAGCCTTCTNAGTTGGACCTTATCCCAATTTGAAATC AGCTATTGCTAAGGTATGAGAAAAATTTGATATTTTTTCTGTGGTATCTT CAATAACCGACCTTCTTTAATAAATAGCGTCGTCGAGACCACTCGATTCC TTTATAAGATGATAGATATCTCAGTTGAGATAATTATCTTTGTAATCATT TCAAAATGAGACAAGTGTTGTTTTTGGCGTAAAGTTTAAAACCTCTATCC AAAATATATTTCAATATGCCAATTTGTTTTCTCATTTGCAGCTTCTCCCT AAAGAGACGTTCCACGGTCTAATCAAGAAATACGGGTTGATGATTAAGCT TGATTACTACGGCGATATCATTAAGAGTTATCACGATCCCGATGGTTCAG TCATAACGCATATTTCCGAAGTTTATGAAGATCCTAACGATCATAACATC TTGTATTTTGGATCCTTCAAAAATGACTTTATTGGAAAATTAAGATTGAA TAGTAAGCAAACTGACCTTTGAAAATCTACATTTGCTTTTTGACTTGGCT TTGTTGATGGAGTTTTGGCTACAGACTTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000881XLOC_000881Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001696-exon-sc0000011-1575043694:863383..863805TCONS_00001696-exon-sc0000011-1575043694:863383..863805Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1575043694:862795..862984TCONS_00001696-exon-sc0000011-1575043694:862795..862984Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1575043694:862173..862464TCONS_00001696-exon-sc0000011-1575043694:862173..862464Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1510915933:863383..863805TCONS_00001696-exon-sc0000011-1510915933:863383..863805Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1510915933:862795..862984TCONS_00001696-exon-sc0000011-1510915933:862795..862984Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1510915933:862173..862464TCONS_00001696-exon-sc0000011-1510915933:862173..862464Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1491911889:863383..863805TCONS_00001696-exon-sc0000011-1491911889:863383..863805Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1491911889:862795..862984TCONS_00001696-exon-sc0000011-1491911889:862795..862984Clytia hemisphaericaexon
TCONS_00001696-exon-sc0000011-1491911889:862173..862464TCONS_00001696-exon-sc0000011-1491911889:862173..862464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:862173..863805 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0077 6.86698 1.99758 0.570287 5.13431 4.0168 14.6192 17.2828 10.5778 13.3465 7.82437 7.27284 9.39913 7.41283 12.386 10.9255 31.0187 33.5989 7.81505 12.7883 15.4428 16.8793 27.631 24.0277 7.90784 8.13078 11.9737 8.89573 50.0067 37.0632
Blast
BLAST of TCONS_00001696 vs. Swiss-Prot (Human)
Match: APMAP (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 8.179e-73
Identity = 125/274 (45.62%), Postives = 175/274 (63.87%), Query Frame = 2
Query:   11 EDKCGRPLGLQFDRDQENLIICDAYLGLLKYNLKAGELTTLISAAKGVNDVPFKFVNHLTISS-SNKVYFTDSSWKWQRRDFPYMILEGSGQGRLISYDIETKQSEVLMDGLFFPNGIALSPDEEFVVVCETTASRIMRLFLKGSRKGIYDLFSDNLPGAPDNIRPSKDGGYWVALPSIRKWP-FSFLDSVGPYPNLKSAIAKLLPKETFHGLIKKYGLMIKLDYYGDIIKSYHDPDGSVITHISEVYEDPNDHNILYFGSFKNDFIGKLRLNS 826
            E  CGRPLG++   +   L + DAY GL + N    E+  L+S+   +      FVN LT++    K+YFTDSS KWQRRD+  +++EG+  GRL+ YD  T++ +VL+D L FPNG+ LSP E+FV+V ETT +RI R+++ G  KG  DLF +N+PG PDNIRPS  GGYWV + +IR  P FS LD +   P +K  I KL  +ET    + +Y L+++L   G   +S HDPDG V T+ISEV+E  + H  LY GSF++ F+ +L L +
Sbjct:  146 EPVCGRPLGIRAGPNG-TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEH-DGH--LYLGSFRSPFLCRLSLQA 415          
The following BLAST results are available for this feature:
BLAST of TCONS_00001696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APMAP8.179e-7345.62Adipocyte plasma membrane-associated protein OS=Ho... [more]
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