TCONS_00001690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001690
Unique NameTCONS_00001690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001690 ID=TCONS_00001690|Name=TCONS_00001690|organism=Clytia hemisphaerica|type=transcript|length=2597bp
TTTCATTCTTTTGAATTTCGTTTTAGAACAACTAacagtgaaaattttaa
atggcTTTCAATGTGGCAGATTTACAAACTTTATTTTCgttgaaaattga
agattgtCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA
GAGAAGATATTGTACCAAActtatttgatgaattttcaaaCATTGCTGAC
ACTGGCGTTTTCCAAGAACCATTCTCattaaagaaatataaaaacCTCAT
CCCAAAAAGATCCccaaagaaaaaatcaagaaagttgaaaaaggttgatg
tgaataaaaatacaaaacttcTTTCTAAAGAGAAAGTTCGAAGCTGTAGT
CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT
ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC
AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC
GTTATGAAAAACTTGAGTGATGatattcaattgtcaataaaaaacaatgt
tAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG
ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT
AAATTGAAAGCTTtgaataaaaagtcaaaaagattCAAATCTAAAAAGCC
AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC
TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT
TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA
TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG
GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT
CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA
TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT
GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG
AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC
AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA
ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC
ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC
TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA
TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT
GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG
TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT
CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA
ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCtccaaattcaaaaca
aagtaccttcactaaattgtccaaaaagAGTGAAAGGGTCGCATCGGACA
GTGATGGCTCNTTcactaaattgtccaaaaataGTGAAAGGGTCGCATCG
GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA
TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA
GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT
GATGAATAATTACATTATTCCAAACATGGATATCGGTTACCAATTTCTTT
GTGTTGGGCTTTGGTTGGTTATGTGTTATATATAAATTGATGAATCTGGC
CCCCAGTGGCCGGTAATTTGTACAATGTTGTGTTTGCAGATGGTGGTACG
TATAAAATCTATGCTTTGCCTTCATTGCACTCATCCGTAGGCAAGCAATC
AACAAAATATCAGTATAAGGCTAAGTATAAAAAGGTCGTAAGTAGACCTG
TAAGTATAATTTTTTGGTAAGTGTTTCCTCGGGTAGTTAAAAAACGTCAG
GTAAAGTTTATACAGTCTTAAAAAATCCCCTCCTTGATCATGGTTTTATT
AGACCGGTCGGTAAGAACAAAATCATAAGAACAGGTACTACACTATAAGA
ACAAGATACTACAATGATACTTAAATGTGCGAATGTTTAAGATGCGATAT
AATTTAGAATTTAGAATAATGTCTATTtcatttttcaccattttgtagca
tattttttataatttataaaatttatttagcTATTACATATTTTGTCTAT
TGAGATGgttttcaaattaaaatctTCTAGTCATGTTGTGATGTCAAAAG
GGAAAAAATATCAGCTTTTTTGGGGccaactttctttttaattcgAAATG
TATTCTACTCAACATTAGATTTAGTCTAAAATGAAGAACAAAACACAGCG
CTGTAAATATTGTACtcagttttgtttatattaatgtaaaaaataat
Run BLAST on NCBI

transcript from alignment at sc0000011:770637..773891-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001690 ID=TCONS_00001690|Name=TCONS_00001690|organism=Clytia hemisphaerica|type=transcript|length=3255bp|location=Sequence derived from alignment at sc0000011:770637..773891- (Clytia hemisphaerica)
TTTCATTCTTTTGAATTTCGTTTTAGAACAACTAACAGTGAAAATTTTAA
ATGGCTTTCAATGTGGCAGATTTACAAACTTTATTTTCGTTGAAAATTGA
AGATTGTCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA
GAGAAGATATTGTACCAAACTTATTTGATGAATTTTCAAACATTGCTGAC
ACTGGCGTTTTCCAAGAACCATTCTCATTAAAGAAATATAAAAACCTCAT
CCCAAAAAGATCCCCAAAGAAAAAATCAAGAAAGTTGAAAAAGGTTGATG
TGAATAAAAATACAAAACTTCTTTCTAAAGAGAAAGTTCGAAGCTGTAGT
CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT
ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC
AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC
GTTATGAAAAACTTGAGTGATGATATTCAATTGTCAATAAAAAACAATGT
TAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG
ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT
AAATTGAAAGCTTTGAATAAAAAGTCAAAAAGATTCAAATCTAAAAAGCC
AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC
TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT
TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA
TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG
GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT
CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA
TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT
GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG
AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC
AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA
ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC
ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC
TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA
TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT
GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG
TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT
CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA
ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCTCCAAATTCAAAACA
AAGTACCTTCACTAAATTGTCCAAAAAGAGTGAAAGGGTCGCATCGGACA
GTGATGGCTCNTTCACTAAATTGTCCAAAAATAGTGAAAGGGTCGCATCG
GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA
TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA
GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT
GATGAATAATTACATTATTCCAAACATGGATATCGGTTACCAATTTCTTT
GTGTTGGGCTTTGGTTGGTTATGTGTTATATATAAATTGATGAATCTGGC
CCCCAGGTAAATATACCGGCAACCTGTTTCTTAGGAACTGTTCCTTTAGA
GACTTGGATAATCTTTCAAATATTTATAGTTTAAGAAAACATACAAAAAA
ACTTTATTAGAACCTAACTTGTTCAAAATTCTCATTATGTATATAACTAT
CTGATTAATTAGTTTGATTATTTCAATGTTTTTAGTAGGTTANTATAACT
ATCTGATTAATTAGTTTGATTATTTTAATGTTTTTAGTAGGTTAAAAGCC
TTCTTATTGTTTTGTTTCAGTGGCCGGTAATTTGTACAATGTTGTGTTTG
CAGATGGTGGTACGTATAAAATCTATGGTAGTATCATCATTTTCAAAAAT
TTCTATTAAAATTATGAACTAAAAACTTTTCAGGTGTGTCTTAAACAAAA
TTAAAGAAAGTCGAAAGTTAAGTTCAAATCTTCAATTCTTATACAGACAT
TTTTCGTGTTTTTCAAGTATTCATACATCTACACACTTGGTATGTATAGT
TCCTTGCTTTTCCCATACCTTTAAATTTCCAAACAATGTAATATTTTGTA
AACAAAACTCTTCTTAAAACCTGTTTACTTTTTTGCATAAAGAAAACTAA
ACTTTTATTATACTACTATACTATAGACTAGGCATTGAAAGTTTGAATCT
AAATGGTATCTGGATCTCAATTACATCATTTTTGAAATGCTCTAATAACT
AAACTTTCTCCTCTCTTATAGCTTTGCCTTCATTGCACTCATCCGTAGGC
AAGCAATCAACAAAATATCAGTATAAGGCTAAGTATAAAAAGGTCGTAAG
TAGACCTGTAAGTATAATTTTTTGGTAAGTGTTTCCTCGGGTAGTTAAAA
AACGTCAGGTAAAGTTTATACAGTCTTAAAAAATCCCCTCCTTGATCATG
GTTTTATTAGACCGGTCGGTAAGAACAAAATCATAAGAACAGGTACTACA
CTATAAGAACAAGATACTACAATGATACTTAAATGTGCGAATGTTTAAGA
TGCGATATAATTTAGAATTTAGAATAATGTCTATTTCATTTTTCACCATT
TTGTAGCATATTTTTTATAATTTATAAAATTTATTTAGCTATTACATATT
TTGTCTATTGAGATGGTTTTCAAATTAAAATCTTCTAGTCATGTTGTGAT
GTCAAAAGGGAAAAAATATCAGCTTTTTTGGGGCCAACTTTCTTTTTAAT
TCGAAATGTATTCTACTCAACATTAGATTTAGTCTAAAATGAAGAACAAA
ACACAGCGCTGTAAATATTGTACTCAGTTTTGTTTATATTAATGTAAAAA
ATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000880XLOC_000880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001690-exon-sc0000011-1575043694:771936..773891TCONS_00001690-exon-sc0000011-1575043694:771936..773891Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1575043694:771615..771671TCONS_00001690-exon-sc0000011-1575043694:771615..771671Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1575043694:770637..771220TCONS_00001690-exon-sc0000011-1575043694:770637..771220Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1510915933:771936..773891TCONS_00001690-exon-sc0000011-1510915933:771936..773891Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1510915933:771615..771671TCONS_00001690-exon-sc0000011-1510915933:771615..771671Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1510915933:770637..771220TCONS_00001690-exon-sc0000011-1510915933:770637..771220Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1491911889:771936..773891TCONS_00001690-exon-sc0000011-1491911889:771936..773891Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1491911889:771615..771671TCONS_00001690-exon-sc0000011-1491911889:771615..771671Clytia hemisphaericaexon
TCONS_00001690-exon-sc0000011-1491911889:770637..771220TCONS_00001690-exon-sc0000011-1491911889:770637..771220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:770637..773891 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8741	2.8103e-07	1.82087	1.09963	5.85069	6.67827	3.62533	7.28858	1.24009	2.06233	8.07196	3.24863	4.84625	5.92983	2.00187	1.22147	3.07871	0.817972	2.59124	2.54026	4.52958	3.66502	2.95859	3.40875	4.73916	6.01757	2.23505	0.875488	1.37555	2.15693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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