TCONS_00001684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001684
Unique NameTCONS_00001684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001684 ID=TCONS_00001684|Name=TCONS_00001684|organism=Clytia hemisphaerica|type=transcript|length=1886bp
AAAAAATGTACTGCGCTATCGTAAATATTTTCACTCGTTCTTCTCTCCAC
TGACGAAAGGCTGAATTCTTTATAGCGATATCGATAACACGATGACAATG
AAAATGaatttgaggattttacttttcattttagCAATCGTTTTTAACGT
TAAAGCAAGAAGCCAACTAAAGAATACAAAGAATGAAGATGTGACCAATG
ACGTTGGTGATTTGTGTGTTGGGCGTGTACCCTTCATTGTGTACGCATAT
CCTCACTCGCGTTCCAAATATTACATATGTCGGAATAACGGACAGCCTGC
AGTTCGTGAATGTCCGGGTTCATCAGAATTTGATGCTGCACGAGTTAGGT
GTCGAAGAACTCAACATTAATCAAGACAGCATTTTGCTTGTTTCAAATAG
TGGTCAAAAGGCCTTTTCATATAttatgatttttgaattaatgtTATAAC
GTATGTAAGTAGGATTTATAATGTATTAGAAAATATGATATATCTCAAAT
TCAATATCTTCTACAACCACATTCGGATAAATGAATCCATCAATTTACTA
TTGTAAATATAATGAAGGGGGCAGGAAATCTTTTGCTTCAAGCATGCGTC
TTGATTTACCGAGTGTGTCAAAAATAAGTTACCCTccttgaatacacctt
ttcgaccgtagccaccaattggacgcgcgggcatttttttgtccacttta
tcccactaaaaccgtcccagtcctttttcgGCAAAAATGTGTTAAAAAAG
GATTAGATCGAGTTTAGTGAGATATAAAGCAGACAAGAAAATGCCCGTTT
ATGGcactttaaagttttcttttttctggcgcacccggtagtttGATCTG
GATTTTATAAACCACCTGACTAGTGACTAAGACTAGTAGAGCCCATTGTA
GTTTTCAAATGTTAAtgaaaattaaagtctgtctcaaaataatctgcagc
ggagacaaaaaaggatataacttttttcaaagtcttttttctatttgata
atatttcactaaatatcttttcaacaagcacaacaTATCTATCTTATTCt
ccgaattctatcaaaatttacagccttttttgtcttagctgcagattata
ttgagacagactttaggtaGTTTGCTCACCTGGTATAGCAAGATCAGATC
TGTGACACATCTATTGTCTTTTGACCACTTGTATTTTAATATTAAAGCAC
TTTGAGATGTTGGATCCACGAAATAACTTTAACAAAATAAACTTGTGTAA
TATTTCAATGTAATATTTCTGATAATGTGTACTGTTACTGGattcataaa
aataaaaaatgacattaaaaaaattacaaaacaaacagaaaaacaTACAT
ACTTCAGCTAATTCATGCCAATTATTtatcaaaattcttaaaaattatat
aCTTTTAAAGCGTAGAGTATCATCtccaaataaataataaaaatatctac
TTGTTATTGAATTAGCCAAGCCCCCcaaatcataaaattttctaaaactA
GCAGTATAAAATCTTCATTTTGCATGGTAATTGCAGGCTGATTATGGCCT
CTGTTGTCATGAGCAAGTACTTCCCAAGAAGTTCCCTTTTCTTTCACAAG
GAACAGTTTTTTTTATTGGTGCTCAATTTATGCTTAGCACTGCCTAATTA
GCCGTTAAATTTCTGACAGCTTTAGATTGTTCTCAATATATTCTAGTTTG
GTCTAGAAAGTGAATCTATTAAGGTTGCTTCTATAAAAACTGTTTGATCA
TCATCGCAGCATAAAAATGTTCATTTAAATATCCCAAGTATCGAGCCATC
GATAAGCAGCCATGGTTTGGTTGGGTTGGTTTCCCATTGGTCCTGACATT
CCATATGATAAACCACGGAACatgcaaaaactaaaa
Run BLAST on NCBI

transcript from alignment at sc0000011:688537..691714-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001684 ID=TCONS_00001684|Name=TCONS_00001684|organism=Clytia hemisphaerica|type=transcript|length=3178bp|location=Sequence derived from alignment at sc0000011:688537..691714- (Clytia hemisphaerica)
AAAAAATGTACTGCGCTATCGTAAATATTTTCACTCGTTCTTCTCTCCAC TGACGAAAGGCTGAATTCTTTATAGCGATATCGATAACACGATGACAATG AAAATGAATTTGAGGATTTTACTTTTCATTTTAGCAATCGTTTTTAACGT TAAAGGTAAGGCATTTTTGAAAATCTTACATAAGGCTCCGCCAGCAGACC CAACTTTTACGCATGCACGCTTTTTTTTAGGGAAAAACATTTGAAAATCA TGGATATCTGTATAAAAAAAAGGAAAAATGACGTTTTCACACAAAATTAG TGCAGCATCACGCATTCAACGCAATCAAAAAGTGGATTTTCACGTTGATG CAATTCATGCACTTTTCTTTCGATTTTCACGCATTCACGCAAACCGCTGG GGGAGGGGTTATGTTGAATAGCTGAAAATTATACCGTTTTGGCTTGCACA AGATTTTACTTCCCACACTAAGATTCTTCTGACTTTTCTGGCTAGAGATT GGAAAGGGTTTGTTCTAAAGGTACTGAAAATCTTGTGTTTACTTATGAAA CTTCCTAACTTTTCAAAGCTCATTTCTCAACTACCCGGATTTTTATCTTT TTCCGATAGAAAAACGGCAGTAGAATCTTAGTCCGGAAAGTGGAATCTTG TGTAAAACGACGGTAATGCTTTGGAATATCAATTCAACGATTTGGGTTTC ATCCGCAAAAATCCGCGAAATTAAGTCCCAATGGAAATTTGGAAGAGTCT CATCCACGAAATATTTCTAAACAAAACTCAAAATATGTCAAGTAAATACT TTTTGAATGGTTACTTGCATCAAAGAGGCCCTCCAGCGGACCCTCAATTC ACGCAATCACGCAATTTTTTTTCGAAATTCACGCATTCACGCAAATTTTT CTCGACTTTCACACAATAACCCGATTTTTCAGAAAATCGGAAGATTTTCG GCAAAAATCGGGGAAACATTTAAAAAACGGGAAAACTGCACATAATCGGT GGGGCAAAGAGAAAATTCACGCATTCACGCACAAAATAGCCCAGATTCAC GCATTCACGCATTTAAATATGGATTTTCACGTTCACGCAAGTTTTTTCAA TTCACGCATTCACGCAATTTATTTTCAATTTTCACGCATTCACGCAACCG AAAATGCCCATTCACGCATTCACGCAAACCGCTGGGGGGACCCCATCAAA TCAAAAAGACGCAAATAATGTGAATTTCAACTCTCTTTCAACAACCAACA TGTATGATTTGACAGTGAAAGTAAAAAAATCGTGAAAATATTGACACCCA CTAGTGCCACCCGCGAAATTAAGTCCCCACAAAATTTTTGAATTTAGCGG ATAGACCCAACCGCGAAAGTTTATCTCATTAAAGTTAACGGTTGATTTTG AATGGAGTTACACTAGGTAAATATTTTGTGCTTATCTCTGATTCCAGCAA GAAGCCAACTAAAGAATACAAAGAATGAAGATGTGACCAATGACGTTGGT GATTTGTGTGTTGGGCGTGTACCCTTCATTGTGTACGCATATCCTCACTC GCGTTCCAAATATTACATATGTCGGAATAACGGACAGCCTGCAGTTCGTG AATGTCCGGGTTCATCAGAATTTGATGCTGCACGAGTTAGGTGTCGAAGA ACTCAACATTAATCAAGACAGCATTTTGCTTGTTTCAAATAGTGGTCAAA AGGCCTTTTCATATATTATGATTTTTGAATTAATGTTATAACGTATGTAA GTAGGATTTATAATGTATTAGAAAATATGATATATCTCAAATTCAATATC TTCTACAACCACATTCGGATAAATGAATCCATCAATTTACTATTGTAAAT ATAATGAAGGGGGCAGGAAATCTTTTGCTTCAAGCATGCGTCTTGATTTA CCGAGTGTGTCAAAAATAAGTTACCCTCCTTGAATACACCTTTTCGACCG TAGCCACCAATTGGACGCGCGGGCATTTTTTTGTCCACTTTATCCCACTA AAACCGTCCCAGTCCTTTTTCGGCAAAAATGTGTTAAAAAAGGATTAGAT CGAGTTTAGTGAGATATAAAGCAGACAAGAAAATGCCCGTTTATGGCACT TTAAAGTTTTCTTTTTTCTGGCGCACCCGGTAGTTTGATCTGGATTTTAT AAACCACCTGACTAGTGACTAAGACTAGTAGAGCCCATTGTAGTTTTCAA ATGTTAATGAAAATTAAAGTCTGTCTCAAAATAATCTGCAGCGGAGACAA AAAAGGATATAACTTTTTTCAAAGTCTTTTTTCTATTTGATAATATTTCA CTAAATATCTTTTCAACAAGCACAACATATCTATCTTATTCTCCGAATTC TATCAAAATTTACAGCCTTTTTTGTCTTAGCTGCAGATTATATTGAGACA GACTTTAGGTAGTTTGCTCACCTGGTATAGCAAGATCAGATCTGTGACAC ATCTATTGTCTTTTGACCACTTGTATTTTAATATTAAAGCACTTTGAGAT GTTGGATCCACGAAATAACTTTAACAAAATAAACTTGTGTAATATTTCAA TGTAATATTTCTGATAATGTGTACTGTTACTGGATTCATAAAAATAAAAA ATGACATTAAAAAAATTACAAAACAAACAGAAAAACATACATACTTCAGC TAATTCATGCCAATTATTTATCAAAATTCTTAAAAATTATATACTTTTAA AGCGTAGAGTATCATCTCCAAATAAATAATAAAAATATCTACTTGTTATT GAATTAGCCAAGCCCCCCAAATCATAAAATTTTCTAAAACTAGCAGTATA AAATCTTCATTTTGCATGGTAATTGCAGGCTGATTATGGCCTCTGTTGTC ATGAGCAAGTACTTCCCAAGAAGTTCCCTTTTCTTTCACAAGGAACAGTT TTTTTTATTGGTGCTCAATTTATGCTTAGCACTGCCTAATTAGCCGTTAA ATTTCTGACAGCTTTAGATTGTTCTCAATATATTCTAGTTTGGTCTAGAA AGTGAATCTATTAAGGTTGCTTCTATAAAAACTGTTTGATCATCATCGCA GCATAAAAATGTTCATTTAAATATCCCAAGTATCGAGCCATCGATAAGCA GCCATGGTTTGGTTGGGTTGGTTTCCCATTGGTCCTGACATTCCATATGA TAAACCACGGAACATGCAAAAACTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000877XLOC_000877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001684-exon-sc0000011-1575043694:691560..691714TCONS_00001684-exon-sc0000011-1575043694:691560..691714Clytia hemisphaericaexon
TCONS_00001684-exon-sc0000011-1575043694:688537..690267TCONS_00001684-exon-sc0000011-1575043694:688537..690267Clytia hemisphaericaexon
TCONS_00001684-exon-sc0000011-1510915933:691560..691714TCONS_00001684-exon-sc0000011-1510915933:691560..691714Clytia hemisphaericaexon
TCONS_00001684-exon-sc0000011-1510915933:688537..690267TCONS_00001684-exon-sc0000011-1510915933:688537..690267Clytia hemisphaericaexon
TCONS_00001684-exon-sc0000011-1491911889:691560..691714TCONS_00001684-exon-sc0000011-1491911889:691560..691714Clytia hemisphaericaexon
TCONS_00001684-exon-sc0000011-1491911889:688537..690267TCONS_00001684-exon-sc0000011-1491911889:688537..690267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:688537..691714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.075343 0 0.0877379 0 0.108854 0.0287874 0.108939 0.102285 2.38528 0.572774 2.91245 3.35406 0.353274 0.587625 1.28054 0.744938 0.0596379 0.298272 0.0823178 0.30898 0 0 0.2372 0.329758 0.112016 0.101648 9.79112 11.7022 0.0285557 0.0294105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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