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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001684 ID=TCONS_00001684|Name=TCONS_00001684|organism=Clytia hemisphaerica|type=transcript|length=1886bp
AAAAAATGTACTGCGCTATCGTAAATATTTTCACTCGTTCTTCTCTCCAC
TGACGAAAGGCTGAATTCTTTATAGCGATATCGATAACACGATGACAATG
AAAATGaatttgaggattttacttttcattttagCAATCGTTTTTAACGT
TAAAGCAAGAAGCCAACTAAAGAATACAAAGAATGAAGATGTGACCAATG
ACGTTGGTGATTTGTGTGTTGGGCGTGTACCCTTCATTGTGTACGCATAT
CCTCACTCGCGTTCCAAATATTACATATGTCGGAATAACGGACAGCCTGC
AGTTCGTGAATGTCCGGGTTCATCAGAATTTGATGCTGCACGAGTTAGGT
GTCGAAGAACTCAACATTAATCAAGACAGCATTTTGCTTGTTTCAAATAG
TGGTCAAAAGGCCTTTTCATATAttatgatttttgaattaatgtTATAAC
GTATGTAAGTAGGATTTATAATGTATTAGAAAATATGATATATCTCAAAT
TCAATATCTTCTACAACCACATTCGGATAAATGAATCCATCAATTTACTA
TTGTAAATATAATGAAGGGGGCAGGAAATCTTTTGCTTCAAGCATGCGTC
TTGATTTACCGAGTGTGTCAAAAATAAGTTACCCTccttgaatacacctt
ttcgaccgtagccaccaattggacgcgcgggcatttttttgtccacttta
tcccactaaaaccgtcccagtcctttttcgGCAAAAATGTGTTAAAAAAG
GATTAGATCGAGTTTAGTGAGATATAAAGCAGACAAGAAAATGCCCGTTT
ATGGcactttaaagttttcttttttctggcgcacccggtagtttGATCTG
GATTTTATAAACCACCTGACTAGTGACTAAGACTAGTAGAGCCCATTGTA
GTTTTCAAATGTTAAtgaaaattaaagtctgtctcaaaataatctgcagc
ggagacaaaaaaggatataacttttttcaaagtcttttttctatttgata
atatttcactaaatatcttttcaacaagcacaacaTATCTATCTTATTCt
ccgaattctatcaaaatttacagccttttttgtcttagctgcagattata
ttgagacagactttaggtaGTTTGCTCACCTGGTATAGCAAGATCAGATC
TGTGACACATCTATTGTCTTTTGACCACTTGTATTTTAATATTAAAGCAC
TTTGAGATGTTGGATCCACGAAATAACTTTAACAAAATAAACTTGTGTAA
TATTTCAATGTAATATTTCTGATAATGTGTACTGTTACTGGattcataaa
aataaaaaatgacattaaaaaaattacaaaacaaacagaaaaacaTACAT
ACTTCAGCTAATTCATGCCAATTATTtatcaaaattcttaaaaattatat
aCTTTTAAAGCGTAGAGTATCATCtccaaataaataataaaaatatctac
TTGTTATTGAATTAGCCAAGCCCCCcaaatcataaaattttctaaaactA
GCAGTATAAAATCTTCATTTTGCATGGTAATTGCAGGCTGATTATGGCCT
CTGTTGTCATGAGCAAGTACTTCCCAAGAAGTTCCCTTTTCTTTCACAAG
GAACAGTTTTTTTTATTGGTGCTCAATTTATGCTTAGCACTGCCTAATTA
GCCGTTAAATTTCTGACAGCTTTAGATTGTTCTCAATATATTCTAGTTTG
GTCTAGAAAGTGAATCTATTAAGGTTGCTTCTATAAAAACTGTTTGATCA
TCATCGCAGCATAAAAATGTTCATTTAAATATCCCAAGTATCGAGCCATC
GATAAGCAGCCATGGTTTGGTTGGGTTGGTTTCCCATTGGTCCTGACATT
CCATATGATAAACCACGGAACatgcaaaaactaaaa Run BLAST on NCBI transcript from alignment at sc0000011:688537..691714- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001684 ID=TCONS_00001684|Name=TCONS_00001684|organism=Clytia hemisphaerica|type=transcript|length=3178bp|location=Sequence derived from alignment at sc0000011:688537..691714- (Clytia hemisphaerica)
AAAAAATGTACTGCGCTATCGTAAATATTTTCACTCGTTCTTCTCTCCAC
TGACGAAAGGCTGAATTCTTTATAGCGATATCGATAACACGATGACAATG
AAAATGAATTTGAGGATTTTACTTTTCATTTTAGCAATCGTTTTTAACGT
TAAAGGTAAGGCATTTTTGAAAATCTTACATAAGGCTCCGCCAGCAGACC
CAACTTTTACGCATGCACGCTTTTTTTTAGGGAAAAACATTTGAAAATCA
TGGATATCTGTATAAAAAAAAGGAAAAATGACGTTTTCACACAAAATTAG
TGCAGCATCACGCATTCAACGCAATCAAAAAGTGGATTTTCACGTTGATG
CAATTCATGCACTTTTCTTTCGATTTTCACGCATTCACGCAAACCGCTGG
GGGAGGGGTTATGTTGAATAGCTGAAAATTATACCGTTTTGGCTTGCACA
AGATTTTACTTCCCACACTAAGATTCTTCTGACTTTTCTGGCTAGAGATT
GGAAAGGGTTTGTTCTAAAGGTACTGAAAATCTTGTGTTTACTTATGAAA
CTTCCTAACTTTTCAAAGCTCATTTCTCAACTACCCGGATTTTTATCTTT
TTCCGATAGAAAAACGGCAGTAGAATCTTAGTCCGGAAAGTGGAATCTTG
TGTAAAACGACGGTAATGCTTTGGAATATCAATTCAACGATTTGGGTTTC
ATCCGCAAAAATCCGCGAAATTAAGTCCCAATGGAAATTTGGAAGAGTCT
CATCCACGAAATATTTCTAAACAAAACTCAAAATATGTCAAGTAAATACT
TTTTGAATGGTTACTTGCATCAAAGAGGCCCTCCAGCGGACCCTCAATTC
ACGCAATCACGCAATTTTTTTTCGAAATTCACGCATTCACGCAAATTTTT
CTCGACTTTCACACAATAACCCGATTTTTCAGAAAATCGGAAGATTTTCG
GCAAAAATCGGGGAAACATTTAAAAAACGGGAAAACTGCACATAATCGGT
GGGGCAAAGAGAAAATTCACGCATTCACGCACAAAATAGCCCAGATTCAC
GCATTCACGCATTTAAATATGGATTTTCACGTTCACGCAAGTTTTTTCAA
TTCACGCATTCACGCAATTTATTTTCAATTTTCACGCATTCACGCAACCG
AAAATGCCCATTCACGCATTCACGCAAACCGCTGGGGGGACCCCATCAAA
TCAAAAAGACGCAAATAATGTGAATTTCAACTCTCTTTCAACAACCAACA
TGTATGATTTGACAGTGAAAGTAAAAAAATCGTGAAAATATTGACACCCA
CTAGTGCCACCCGCGAAATTAAGTCCCCACAAAATTTTTGAATTTAGCGG
ATAGACCCAACCGCGAAAGTTTATCTCATTAAAGTTAACGGTTGATTTTG
AATGGAGTTACACTAGGTAAATATTTTGTGCTTATCTCTGATTCCAGCAA
GAAGCCAACTAAAGAATACAAAGAATGAAGATGTGACCAATGACGTTGGT
GATTTGTGTGTTGGGCGTGTACCCTTCATTGTGTACGCATATCCTCACTC
GCGTTCCAAATATTACATATGTCGGAATAACGGACAGCCTGCAGTTCGTG
AATGTCCGGGTTCATCAGAATTTGATGCTGCACGAGTTAGGTGTCGAAGA
ACTCAACATTAATCAAGACAGCATTTTGCTTGTTTCAAATAGTGGTCAAA
AGGCCTTTTCATATATTATGATTTTTGAATTAATGTTATAACGTATGTAA
GTAGGATTTATAATGTATTAGAAAATATGATATATCTCAAATTCAATATC
TTCTACAACCACATTCGGATAAATGAATCCATCAATTTACTATTGTAAAT
ATAATGAAGGGGGCAGGAAATCTTTTGCTTCAAGCATGCGTCTTGATTTA
CCGAGTGTGTCAAAAATAAGTTACCCTCCTTGAATACACCTTTTCGACCG
TAGCCACCAATTGGACGCGCGGGCATTTTTTTGTCCACTTTATCCCACTA
AAACCGTCCCAGTCCTTTTTCGGCAAAAATGTGTTAAAAAAGGATTAGAT
CGAGTTTAGTGAGATATAAAGCAGACAAGAAAATGCCCGTTTATGGCACT
TTAAAGTTTTCTTTTTTCTGGCGCACCCGGTAGTTTGATCTGGATTTTAT
AAACCACCTGACTAGTGACTAAGACTAGTAGAGCCCATTGTAGTTTTCAA
ATGTTAATGAAAATTAAAGTCTGTCTCAAAATAATCTGCAGCGGAGACAA
AAAAGGATATAACTTTTTTCAAAGTCTTTTTTCTATTTGATAATATTTCA
CTAAATATCTTTTCAACAAGCACAACATATCTATCTTATTCTCCGAATTC
TATCAAAATTTACAGCCTTTTTTGTCTTAGCTGCAGATTATATTGAGACA
GACTTTAGGTAGTTTGCTCACCTGGTATAGCAAGATCAGATCTGTGACAC
ATCTATTGTCTTTTGACCACTTGTATTTTAATATTAAAGCACTTTGAGAT
GTTGGATCCACGAAATAACTTTAACAAAATAAACTTGTGTAATATTTCAA
TGTAATATTTCTGATAATGTGTACTGTTACTGGATTCATAAAAATAAAAA
ATGACATTAAAAAAATTACAAAACAAACAGAAAAACATACATACTTCAGC
TAATTCATGCCAATTATTTATCAAAATTCTTAAAAATTATATACTTTTAA
AGCGTAGAGTATCATCTCCAAATAAATAATAAAAATATCTACTTGTTATT
GAATTAGCCAAGCCCCCCAAATCATAAAATTTTCTAAAACTAGCAGTATA
AAATCTTCATTTTGCATGGTAATTGCAGGCTGATTATGGCCTCTGTTGTC
ATGAGCAAGTACTTCCCAAGAAGTTCCCTTTTCTTTCACAAGGAACAGTT
TTTTTTATTGGTGCTCAATTTATGCTTAGCACTGCCTAATTAGCCGTTAA
ATTTCTGACAGCTTTAGATTGTTCTCAATATATTCTAGTTTGGTCTAGAA
AGTGAATCTATTAAGGTTGCTTCTATAAAAACTGTTTGATCATCATCGCA
GCATAAAAATGTTCATTTAAATATCCCAAGTATCGAGCCATCGATAAGCA
GCCATGGTTTGGTTGGGTTGGTTTCCCATTGGTCCTGACATTCCATATGA
TAAACCACGGAACATGCAAAAACTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001684-exon-sc0000011-1575043694:691560..691714 | TCONS_00001684-exon-sc0000011-1575043694:691560..691714 | Clytia hemisphaerica | exon |
| TCONS_00001684-exon-sc0000011-1575043694:688537..690267 | TCONS_00001684-exon-sc0000011-1575043694:688537..690267 | Clytia hemisphaerica | exon |
| TCONS_00001684-exon-sc0000011-1510915933:691560..691714 | TCONS_00001684-exon-sc0000011-1510915933:691560..691714 | Clytia hemisphaerica | exon |
| TCONS_00001684-exon-sc0000011-1510915933:688537..690267 | TCONS_00001684-exon-sc0000011-1510915933:688537..690267 | Clytia hemisphaerica | exon |
| TCONS_00001684-exon-sc0000011-1491911889:691560..691714 | TCONS_00001684-exon-sc0000011-1491911889:691560..691714 | Clytia hemisphaerica | exon |
| TCONS_00001684-exon-sc0000011-1491911889:688537..690267 | TCONS_00001684-exon-sc0000011-1491911889:688537..690267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:688537..691714 - |
Blast
The following BLAST results are available for this feature:
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