TCONS_00001681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001681
Unique NameTCONS_00001681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001681 ID=TCONS_00001681|Name=TCONS_00001681|organism=Clytia hemisphaerica|type=transcript|length=1574bp
gcGCAACTAGTAAATAAATCAACCAAAGAAAGCAATCACAATGGCCATCA
ACGCAACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTC
ACCAGCATTCTGTCCGTTTTTGGGACTCTATTCAACgcttacattattca
acatttttataagaaactatcATCTTcacaaaaacgaaaaaatatcaaca
ctcTAATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTGCC
GGTCCGTCaaatgcagtttactattttgGAAGTTACCATTATGGAAGTGT
TTTTGAAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAGTT
TATACGTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCT
ATCGATCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTC
CACTCCAAAGAAGTTAAAGACATGTATGGTTTTTATGTGGATTGGATCga
tcttattttcttgtgttggCGAAGTTTTCTGTCATATATGGAAAAACTTT
TATAACAATCCTTCGTACACAATTCGATATCATGTTTGGATTCTAGTTTT
GGATACTATACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCACGATAT
TCACTTCTTGTTCCGCTATCAAGAAGGCCTTTGAAAGaaaaaagaCACTG
CGACCATCTGAAGATGAAACTGCAGTAGAAAGAAACAAACGAAAACTtca
agaaaaacatttaatgCAAATGTTTGCTCTCATGTTCTTTATATTCGCTC
TGGCTTTCATTCCAAGTTTAATATTTTGGTTTATGGATAACAAAGGACTT
TACCAAGAAAATCCCGAAGTAATCATCGCATGGCATTGCTCCTCAACAAC
ATTCGCTTTATCATCTGCTTGCAATCCACTTTTTATGATGTATTACGCAC
CTGACTTCAagcgaaaaatctttttttggagAAAACAAAATAGCACTTTA
GTAACTGAGAGTCAAGTAACAAGTTCAGAAGTGGTGATATGTATTAAATA
TGGAGTGAATAAACTCTCAGGTCATGGAAATAGCATCAATAATGACTCAA
CGTCGAAGCTAATCAACTTATTAAAATATCATAATTCAGTTCTATAAGAT
ACTACGTctatatacaccttttcgaccgtggtcacgcggtcaggcgcgtg
ccacttttttatttaattatccccctaaactcgattcaattcttttttta
aacttttttctattgtctataggtgcgaaaaaaaagactggggcggttta
gggtggtaaaaaaagaaatccccgcgcggcaattggcggctacggtcgaa
aaggtgtattattgaAAGCCTTTTTTACTCTGGATCACTTCTATATTATA
GATTGTCAGAtatattttattacaaactTCCAATATCTCCATTTAATGTA
AGCTGGCGTGTTTGAGTAGCTGTttcaagtacacgttttttttttataag
aacaaactatataagaacataaggcttcgaggcccaaaaatttaagaaca
ttctaagaacattctaaggctttg
Run BLAST on NCBI

protein sequence of TCONS_00001681-protein

>TCONS_00001681-protein ID=TCONS_00001681-protein|Name=TCONS_00001681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MAINATNTALQTSNLLNGIFTSILSVFGTLFNAYIIQHFYKKLSSSQKRK
NINTLMLGQSIVDFYNSAIAGPSNAVYYFGSYHYGSVFEKTLYFKLIDII
SPSLYVTSLQISMLCFLLTAIDRLLSITFPVFHHVASTPKKLKTCMVFMW
IGSILFSCVGEVFCHIWKNFYNNPSYTIRYHVWILVLDTILVVLIALLWV
STIFTSCSAIKKAFERKKTLRPSEDETAVERNKRKLQEKHLMQMFALMFF
IFALAFIPSLIFWFMDNKGLYQENPEVIIAWHCSSTTFALSSACNPLFMM
YYAPDFKRKIFFWRKQNSTLVTESQVTSSEVVICIKYGVNKLSGHGNSIN
NDSTSKLINLLKYHNSVL
Run BLAST on NCBI

transcript from alignment at sc0000011:586244..589391-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001681 ID=TCONS_00001681|Name=TCONS_00001681|organism=Clytia hemisphaerica|type=transcript|length=3148bp|location=Sequence derived from alignment at sc0000011:586244..589391- (Clytia hemisphaerica)
GCGCAACTAGTAAATAAATCAACCAAAGAAAGCAATCACAATGGCCATCA ACGCAACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTC ACCAGCATTCTGTCCGTTTTTGGGACTCTATTCAACGCTTACATTATTCA ACATTTTTATAAGAAACTATCATCTTCACAAAAACGAAAAAATATCAACA CTCTAATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTGCC GGTCCGTCAAATGCAGTTTACTATTTTGGAAGTTACCATTATGGAAGTGT TTTTGAAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAGTT TATACGTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCT ATCGATCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTC CACTCCAAAGAAGTTAAAGGTGAGGAATAAACAACTTAGGCTATGCTATA GTCTAAGACAAATCACTATCTAAGAAATAAGCCCAAAGCCGAAAAGAATT CGCAAACGGTTTTTTTTGCCGACAAGAGTTTACAGTCGGTAGAGTTTGCC AGTCTTCGAAACTCTCCCGACGATTTTTTCCGTATACCACCATAACGCCA TACCACCATATTTTCCCGCCTTTGTACTGGGCGATAACATCGTCTATAAA CAACCTCGTACGCATGGTGAGAGGGTTTTGACCTTACAAATGGTTTTGGT ACCGTATCCACATTCACTTTCTCAGAGTCTCGCCGCTGATGATTTGCTCT GACTTGCAAGACTCTCCCGTGGATGGAATCCTCTTTTCTTTTCCTTATTC TATTGATATTCTATTGTCACACCAATCTATTTTTCTTGCTATAGGTGGGT AATTATCTTCGAATATCTTAGACCATGTTCACACGTTAGTGTTCCGTTTC GCTCCGGTATGATTTTCGTTACGGATCGAGTGTGTTCATATTGGTTTCAG AATGTTTCGGATCAAGAATACAAGATAACGGAGCGTTTCCGTTCCGATGA AAAAAGTGGAACGAAAACGTTTCGATCTGTTTTGCTTTGTAATGTCTTCT TTTTTGATGTTTCGAATTTTGACGTTCACACTTGTTTCGGGACCGTTTTG TTTCGTTTTGGAACGGAACCGTAACGTATGAACATTGTTTGGGATGATCA AGAACTCTTCATCCTTAATTCTACTGCTCTGCTACGTCCTGAGGACGTAA ACGTAAACCAATCATCATTTGAAAAATCAGAGATTTTTGGGAGTTTGTGG GACCTTCTTAATCACCTGCTACATTAACTGTTATTATAATTCATTTTCAG ACATGTATGGTTTTTATGTGGATTGGATCGATCTTATTTTCTTGTGTTGG CGAAGTTTTCTGTCATATATGGAAAAACTTTTATAACAATCCTTCGTACA CAATTCGATATCATGTTTGGATTCTAGTTTTGGATACTATACTTGTTGTC CTCATTGCACTTTTGTGGGTTTCCACGATATTCACTTCTTGTTCCGCTAT CAAGAAGGCCTTTGAAAGGTAATATCTATGCACAATGTTAACCTTTTTAC GGAACAAATATGGTCAAATCACCAAATGAATGTTAGCCTATACTAGACGT CACCCGCGTTTTTTCTACGCAATTAACGTCTATTCCACTTTGCGACTTTC GAATGTTTTGAGCCCGGGTTTTCGGGCTCTAAACATTCGACTTTTTGACG TCACTTTTAACTTTCGAAGCTCCTGCAGTAGCAAAAAAATCGAATTTGCG TCAAAGCATTTGAAAGGCTTCTATTTTTCGAAAATCGTCAAAGTGGAACT CACTGAAACGAGATTAAAAATCCCGGTTTTTAGTGAGGGGCTCGCTAAAT GAATGTCTGAAATGCGAAAATTTTGAGAACACAACAGTTGGAAATTTGCT AAGAATAACCCTCTGTTTACTACAGCTCTGTCTCAGTGATCCCGTGTTAA GGACGAAACATCGAAGTTTTTTTCTCGCCGAAGATTGATTTATTCAGTAT GGGTAAGCTTAATGTCCGCAGTCAACACCCAAAGGTTTCTTTGGGGAGGG GGTGCCACTGGATTTCTCCACATTCCCTTAAGCCATCTCTTTAGTTGCCG AGCATTAAGCAGAGAGGCACCATGTACCATTTTGGGAGTCTTTGTATGAC CCAGTTGATGCTCTACCTTCATGGTTCGACCGCGTTGACCCACATTTTAA TCTTTCTTTAGAAAAAAGACACTGCGACCATCTGAAGATGAAACTGCAGT AGAAAGAAACAAACGAAAACTTCAAGAAAAACATTTAATGCAAATGTTTG CTCTCATGTTCTTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATATTT TGGTTTATGGATAACAAAGGACTTTACCAAGAAAATCCCGAAGTAATCAT CGCATGGCATTGCTCCTCAACAACATTCGCTTTATCATCTGCTTGCAATC CACTTTTTATGATGTATTACGCACCTGACTTCAAGCGAAAAATCTTTTTT TGGAGAAAACAAAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAGTTC AGAAGTGGTGATATGTATTAAATATGGAGTGAATAAACTCTCAGGTCATG GAAATAGCATCAATAATGACTCAACGTCGAAGCTAATCAACTTATTAAAA TATCATAATTCAGTTCTATAAGATACTACGTCTATATACACCTTTTCGAC CGTGGTCACGCGGTCAGGCGCGTGCCACTTTTTTATTTAATTATCCCCCT AAACTCGATTCAATTCTTTTTTTAAACTTTTTTCTATTGTCTATAGGTGC GAAAAAAAAGACTGGGGCGGTTTAGGGTGGTAAAAAAAGAAATCCCCGCG CGGCAATTGGCGGCTACGGTCGAAAAGGTGTATTATTGAAAGCCTTTTTT ACTCTGGATCACTTCTATATTATAGATTGTCAGATATATTTTATTACAAA CTTCCAATATCTCCATTTAATGTAAGCTGGCGTGTTTGAGTAGCTGTTTC AAGTACACGTTTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCT TCGAGGCCCAAAAATTTAAGAACATTCTAAGAACATTCTAAGGCTTTG

Coding sequence (CDS) from alignment at sc0000011:586244..589391-

>TCONS_00001681 ID=TCONS_00001681|Name=TCONS_00001681|organism=Clytia hemisphaerica|type=CDS|length=3321bp|location=Sequence derived from alignment at sc0000011:586244..589391- (Clytia hemisphaerica)
AAAAAAGACACTGCGACCATCTGAAGATGAAACTGCAGTAGAAAGAAACA
AACGAAAACTTCAAGAAAAACATTTAATGCAAATGTTTGCTCTCATGTTC
TTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATATTTTGGTTTATGGA
TAACAAAGGACTTTACCAAGAAAATCCCGAAGTAATCATCGCATGGCATT
GCTCCTCAACAACATTCGCTTTATCATCTGCTTGCAATCCACTTTTTATG
ATGTATTACGCACCTGACTTCAAGCGAAAAATCTTTTTTTGGAGAAAACA
AAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAGTTCAGAAGTGGTGA
TATGTATTAAATATGGAGTGAATAAACTCTCAGGTCATGGAAATAGCATC
AATAATGACTCAACGTCGAAGCTAATCAACTTATTAAAATATCATAATTC
AGTTCTATAAACATGTATGGTTTTTATGTGGATTGGATCGATCTTATTTT
CTTGTGTTGGCGAAGTTTTCTGTCATATATGGAAAAACTTTTATAACAAT
CCTTCGTACACAATTCGATATCATGTTTGGATTCTAGTTTTGGATACTAT
ACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCACGATATTCACTTCTT
GTTCCGCTATCAAGAAGGCCTTTGAAAGATGGCCATCAACGCAACAAATA
CTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTCACCAGCATTCTG
TCCGTTTTTGGGACTCTATTCAACGCTTACATTATTCAACATTTTTATAA
GAAACTATCATCTTCACAAAAACGAAAAAATATCAACACTCTAATGCTTG
GACAATCCATTGTTGATTTTTACAATTCTGCCATTGCCGGTCCGTCAAAT
GCAGTTTACTATTTTGGAAGTTACCATTATGGAAGTGTTTTTGAAAAGAC
ATTGTATTTCAAATTAATTGATATCATTTCACCAAGTTTATACGTGACAT
CATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCTATCGATCGGTTG
TTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTCCACTCCAAAGAA
GTTAAAGAAAAAAGACACTGCGACCATCTGAAGATGAAACTGCAGTAGAA
AGAAACAAACGAAAACTTCAAGAAAAACATTTAATGCAAATGTTTGCTCT
CATGTTCTTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATATTTTGGT
TTATGGATAACAAAGGACTTTACCAAGAAAATCCCGAAGTAATCATCGCA
TGGCATTGCTCCTCAACAACATTCGCTTTATCATCTGCTTGCAATCCACT
TTTTATGATGTATTACGCACCTGACTTCAAGCGAAAAATCTTTTTTTGGA
GAAAACAAAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAGTTCAGAA
GTGGTGATATGTATTAAATATGGAGTGAATAAACTCTCAGGTCATGGAAA
TAGCATCAATAATGACTCAACGTCGAAGCTAATCAACTTATTAAAATATC
ATAATTCAGTTCTATAAACATGTATGGTTTTTATGTGGATTGGATCGATC
TTATTTTCTTGTGTTGGCGAAGTTTTCTGTCATATATGGAAAAACTTTTA
TAACAATCCTTCGTACACAATTCGATATCATGTTTGGATTCTAGTTTTGG
ATACTATACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCACGATATTC
ACTTCTTGTTCCGCTATCAAGAAGGCCTTTGAAAGATGGCCATCAACGCA
ACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTCACCAG
CATTCTGTCCGTTTTTGGGACTCTATTCAACGCTTACATTATTCAACATT
TTTATAAGAAACTATCATCTTCACAAAAACGAAAAAATATCAACACTCTA
ATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTGCCGGTCC
GTCAAATGCAGTTTACTATTTTGGAAGTTACCATTATGGAAGTGTTTTTG
AAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAGTTTATAC
GTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCTATCGA
TCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTCCACTC
CAAAGAAGTTAAAGAAAAAAGACACTGCGACCATCTGAAGATGAAACTGC
AGTAGAAAGAAACAAACGAAAACTTCAAGAAAAACATTTAATGCAAATGT
TTGCTCTCATGTTCTTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATA
TTTTGGTTTATGGATAACAAAGGACTTTACCAAGAAAATCCCGAAGTAAT
CATCGCATGGCATTGCTCCTCAACAACATTCGCTTTATCATCTGCTTGCA
ATCCACTTTTTATGATGTATTACGCACCTGACTTCAAGCGAAAAATCTTT
TTTTGGAGAAAACAAAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAG
TTCAGAAGTGGTGATATGTATTAAATATGGAGTGAATAAACTCTCAGGTC
ATGGAAATAGCATCAATAATGACTCAACGTCGAAGCTAATCAACTTATTA
AAATATCATAATTCAGTTCTATAAACATGTATGGTTTTTATGTGGATTGG
ATCGATCTTATTTTCTTGTGTTGGCGAAGTTTTCTGTCATATATGGAAAA
ACTTTTATAACAATCCTTCGTACACAATTCGATATCATGTTTGGATTCTA
GTTTTGGATACTATACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCAC
GATATTCACTTCTTGTTCCGCTATCAAGAAGGCCTTTGAAAGATGGCCAT
CAACGCAACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATAT
TCACCAGCATTCTGTCCGTTTTTGGGACTCTATTCAACGCTTACATTATT
CAACATTTTTATAAGAAACTATCATCTTCACAAAAACGAAAAAATATCAA
CACTCTAATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTG
CCGGTCCGTCAAATGCAGTTTACTATTTTGGAAGTTACCATTATGGAAGT
GTTTTTGAAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAG
TTTATACGTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAG
CTATCGATCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCG
TCCACTCCAAAGAAGTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000874XLOC_000874Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001681-proteinTCONS_00001681-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001681-exon-sc0000011-1575043694:588923..589391TCONS_00001681-exon-sc0000011-1575043694:588923..589391Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1575043694:587824..588041TCONS_00001681-exon-sc0000011-1575043694:587824..588041Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1575043694:586244..587130TCONS_00001681-exon-sc0000011-1575043694:586244..587130Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1510915933:588923..589391TCONS_00001681-exon-sc0000011-1510915933:588923..589391Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1510915933:587824..588041TCONS_00001681-exon-sc0000011-1510915933:587824..588041Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1510915933:586244..587130TCONS_00001681-exon-sc0000011-1510915933:586244..587130Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1491911889:588923..589391TCONS_00001681-exon-sc0000011-1491911889:588923..589391Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1491911889:587824..588041TCONS_00001681-exon-sc0000011-1491911889:587824..588041Clytia hemisphaericaexon
TCONS_00001681-exon-sc0000011-1491911889:586244..587130TCONS_00001681-exon-sc0000011-1491911889:586244..587130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:586244..589391 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15251 0.180101 0.226138 0.225734 1.76472 1.10074 1.61828 1.78977 1.09182 1.2883 1.28349 1.02947 2.52071 3.11331 3.01921 4.07494 1.32897 2.13152 3.76812 3.40359 2.4871 2.05036 1.42324 2.16113 0.113416 0.302313 3.49269 1.64294 1.26427 1.35644
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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