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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001681 ID=TCONS_00001681|Name=TCONS_00001681|organism=Clytia hemisphaerica|type=transcript|length=1574bp
gcGCAACTAGTAAATAAATCAACCAAAGAAAGCAATCACAATGGCCATCA
ACGCAACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTC
ACCAGCATTCTGTCCGTTTTTGGGACTCTATTCAACgcttacattattca
acatttttataagaaactatcATCTTcacaaaaacgaaaaaatatcaaca
ctcTAATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTGCC
GGTCCGTCaaatgcagtttactattttgGAAGTTACCATTATGGAAGTGT
TTTTGAAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAGTT
TATACGTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCT
ATCGATCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTC
CACTCCAAAGAAGTTAAAGACATGTATGGTTTTTATGTGGATTGGATCga
tcttattttcttgtgttggCGAAGTTTTCTGTCATATATGGAAAAACTTT
TATAACAATCCTTCGTACACAATTCGATATCATGTTTGGATTCTAGTTTT
GGATACTATACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCACGATAT
TCACTTCTTGTTCCGCTATCAAGAAGGCCTTTGAAAGaaaaaagaCACTG
CGACCATCTGAAGATGAAACTGCAGTAGAAAGAAACAAACGAAAACTtca
agaaaaacatttaatgCAAATGTTTGCTCTCATGTTCTTTATATTCGCTC
TGGCTTTCATTCCAAGTTTAATATTTTGGTTTATGGATAACAAAGGACTT
TACCAAGAAAATCCCGAAGTAATCATCGCATGGCATTGCTCCTCAACAAC
ATTCGCTTTATCATCTGCTTGCAATCCACTTTTTATGATGTATTACGCAC
CTGACTTCAagcgaaaaatctttttttggagAAAACAAAATAGCACTTTA
GTAACTGAGAGTCAAGTAACAAGTTCAGAAGTGGTGATATGTATTAAATA
TGGAGTGAATAAACTCTCAGGTCATGGAAATAGCATCAATAATGACTCAA
CGTCGAAGCTAATCAACTTATTAAAATATCATAATTCAGTTCTATAAGAT
ACTACGTctatatacaccttttcgaccgtggtcacgcggtcaggcgcgtg
ccacttttttatttaattatccccctaaactcgattcaattcttttttta
aacttttttctattgtctataggtgcgaaaaaaaagactggggcggttta
gggtggtaaaaaaagaaatccccgcgcggcaattggcggctacggtcgaa
aaggtgtattattgaAAGCCTTTTTTACTCTGGATCACTTCTATATTATA
GATTGTCAGAtatattttattacaaactTCCAATATCTCCATTTAATGTA
AGCTGGCGTGTTTGAGTAGCTGTttcaagtacacgttttttttttataag
aacaaactatataagaacataaggcttcgaggcccaaaaatttaagaaca
ttctaagaacattctaaggctttg Run BLAST on NCBI protein sequence of TCONS_00001681-protein >TCONS_00001681-protein ID=TCONS_00001681-protein|Name=TCONS_00001681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MAINATNTALQTSNLLNGIFTSILSVFGTLFNAYIIQHFYKKLSSSQKRK
NINTLMLGQSIVDFYNSAIAGPSNAVYYFGSYHYGSVFEKTLYFKLIDII
SPSLYVTSLQISMLCFLLTAIDRLLSITFPVFHHVASTPKKLKTCMVFMW
IGSILFSCVGEVFCHIWKNFYNNPSYTIRYHVWILVLDTILVVLIALLWV
STIFTSCSAIKKAFERKKTLRPSEDETAVERNKRKLQEKHLMQMFALMFF
IFALAFIPSLIFWFMDNKGLYQENPEVIIAWHCSSTTFALSSACNPLFMM
YYAPDFKRKIFFWRKQNSTLVTESQVTSSEVVICIKYGVNKLSGHGNSIN
NDSTSKLINLLKYHNSVL Run BLAST on NCBI transcript from alignment at sc0000011:586244..589391- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001681 ID=TCONS_00001681|Name=TCONS_00001681|organism=Clytia hemisphaerica|type=transcript|length=3148bp|location=Sequence derived from alignment at sc0000011:586244..589391- (Clytia hemisphaerica)
GCGCAACTAGTAAATAAATCAACCAAAGAAAGCAATCACAATGGCCATCA
ACGCAACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTC
ACCAGCATTCTGTCCGTTTTTGGGACTCTATTCAACGCTTACATTATTCA
ACATTTTTATAAGAAACTATCATCTTCACAAAAACGAAAAAATATCAACA
CTCTAATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTGCC
GGTCCGTCAAATGCAGTTTACTATTTTGGAAGTTACCATTATGGAAGTGT
TTTTGAAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAGTT
TATACGTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCT
ATCGATCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTC
CACTCCAAAGAAGTTAAAGGTGAGGAATAAACAACTTAGGCTATGCTATA
GTCTAAGACAAATCACTATCTAAGAAATAAGCCCAAAGCCGAAAAGAATT
CGCAAACGGTTTTTTTTGCCGACAAGAGTTTACAGTCGGTAGAGTTTGCC
AGTCTTCGAAACTCTCCCGACGATTTTTTCCGTATACCACCATAACGCCA
TACCACCATATTTTCCCGCCTTTGTACTGGGCGATAACATCGTCTATAAA
CAACCTCGTACGCATGGTGAGAGGGTTTTGACCTTACAAATGGTTTTGGT
ACCGTATCCACATTCACTTTCTCAGAGTCTCGCCGCTGATGATTTGCTCT
GACTTGCAAGACTCTCCCGTGGATGGAATCCTCTTTTCTTTTCCTTATTC
TATTGATATTCTATTGTCACACCAATCTATTTTTCTTGCTATAGGTGGGT
AATTATCTTCGAATATCTTAGACCATGTTCACACGTTAGTGTTCCGTTTC
GCTCCGGTATGATTTTCGTTACGGATCGAGTGTGTTCATATTGGTTTCAG
AATGTTTCGGATCAAGAATACAAGATAACGGAGCGTTTCCGTTCCGATGA
AAAAAGTGGAACGAAAACGTTTCGATCTGTTTTGCTTTGTAATGTCTTCT
TTTTTGATGTTTCGAATTTTGACGTTCACACTTGTTTCGGGACCGTTTTG
TTTCGTTTTGGAACGGAACCGTAACGTATGAACATTGTTTGGGATGATCA
AGAACTCTTCATCCTTAATTCTACTGCTCTGCTACGTCCTGAGGACGTAA
ACGTAAACCAATCATCATTTGAAAAATCAGAGATTTTTGGGAGTTTGTGG
GACCTTCTTAATCACCTGCTACATTAACTGTTATTATAATTCATTTTCAG
ACATGTATGGTTTTTATGTGGATTGGATCGATCTTATTTTCTTGTGTTGG
CGAAGTTTTCTGTCATATATGGAAAAACTTTTATAACAATCCTTCGTACA
CAATTCGATATCATGTTTGGATTCTAGTTTTGGATACTATACTTGTTGTC
CTCATTGCACTTTTGTGGGTTTCCACGATATTCACTTCTTGTTCCGCTAT
CAAGAAGGCCTTTGAAAGGTAATATCTATGCACAATGTTAACCTTTTTAC
GGAACAAATATGGTCAAATCACCAAATGAATGTTAGCCTATACTAGACGT
CACCCGCGTTTTTTCTACGCAATTAACGTCTATTCCACTTTGCGACTTTC
GAATGTTTTGAGCCCGGGTTTTCGGGCTCTAAACATTCGACTTTTTGACG
TCACTTTTAACTTTCGAAGCTCCTGCAGTAGCAAAAAAATCGAATTTGCG
TCAAAGCATTTGAAAGGCTTCTATTTTTCGAAAATCGTCAAAGTGGAACT
CACTGAAACGAGATTAAAAATCCCGGTTTTTAGTGAGGGGCTCGCTAAAT
GAATGTCTGAAATGCGAAAATTTTGAGAACACAACAGTTGGAAATTTGCT
AAGAATAACCCTCTGTTTACTACAGCTCTGTCTCAGTGATCCCGTGTTAA
GGACGAAACATCGAAGTTTTTTTCTCGCCGAAGATTGATTTATTCAGTAT
GGGTAAGCTTAATGTCCGCAGTCAACACCCAAAGGTTTCTTTGGGGAGGG
GGTGCCACTGGATTTCTCCACATTCCCTTAAGCCATCTCTTTAGTTGCCG
AGCATTAAGCAGAGAGGCACCATGTACCATTTTGGGAGTCTTTGTATGAC
CCAGTTGATGCTCTACCTTCATGGTTCGACCGCGTTGACCCACATTTTAA
TCTTTCTTTAGAAAAAAGACACTGCGACCATCTGAAGATGAAACTGCAGT
AGAAAGAAACAAACGAAAACTTCAAGAAAAACATTTAATGCAAATGTTTG
CTCTCATGTTCTTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATATTT
TGGTTTATGGATAACAAAGGACTTTACCAAGAAAATCCCGAAGTAATCAT
CGCATGGCATTGCTCCTCAACAACATTCGCTTTATCATCTGCTTGCAATC
CACTTTTTATGATGTATTACGCACCTGACTTCAAGCGAAAAATCTTTTTT
TGGAGAAAACAAAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAGTTC
AGAAGTGGTGATATGTATTAAATATGGAGTGAATAAACTCTCAGGTCATG
GAAATAGCATCAATAATGACTCAACGTCGAAGCTAATCAACTTATTAAAA
TATCATAATTCAGTTCTATAAGATACTACGTCTATATACACCTTTTCGAC
CGTGGTCACGCGGTCAGGCGCGTGCCACTTTTTTATTTAATTATCCCCCT
AAACTCGATTCAATTCTTTTTTTAAACTTTTTTCTATTGTCTATAGGTGC
GAAAAAAAAGACTGGGGCGGTTTAGGGTGGTAAAAAAAGAAATCCCCGCG
CGGCAATTGGCGGCTACGGTCGAAAAGGTGTATTATTGAAAGCCTTTTTT
ACTCTGGATCACTTCTATATTATAGATTGTCAGATATATTTTATTACAAA
CTTCCAATATCTCCATTTAATGTAAGCTGGCGTGTTTGAGTAGCTGTTTC
AAGTACACGTTTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCT
TCGAGGCCCAAAAATTTAAGAACATTCTAAGAACATTCTAAGGCTTTG Coding sequence (CDS) from alignment at sc0000011:586244..589391- >TCONS_00001681 ID=TCONS_00001681|Name=TCONS_00001681|organism=Clytia hemisphaerica|type=CDS|length=3321bp|location=Sequence derived from alignment at sc0000011:586244..589391- (Clytia hemisphaerica)
AAAAAAGACACTGCGACCATCTGAAGATGAAACTGCAGTAGAAAGAAACA
AACGAAAACTTCAAGAAAAACATTTAATGCAAATGTTTGCTCTCATGTTC
TTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATATTTTGGTTTATGGA
TAACAAAGGACTTTACCAAGAAAATCCCGAAGTAATCATCGCATGGCATT
GCTCCTCAACAACATTCGCTTTATCATCTGCTTGCAATCCACTTTTTATG
ATGTATTACGCACCTGACTTCAAGCGAAAAATCTTTTTTTGGAGAAAACA
AAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAGTTCAGAAGTGGTGA
TATGTATTAAATATGGAGTGAATAAACTCTCAGGTCATGGAAATAGCATC
AATAATGACTCAACGTCGAAGCTAATCAACTTATTAAAATATCATAATTC
AGTTCTATAAACATGTATGGTTTTTATGTGGATTGGATCGATCTTATTTT
CTTGTGTTGGCGAAGTTTTCTGTCATATATGGAAAAACTTTTATAACAAT
CCTTCGTACACAATTCGATATCATGTTTGGATTCTAGTTTTGGATACTAT
ACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCACGATATTCACTTCTT
GTTCCGCTATCAAGAAGGCCTTTGAAAGATGGCCATCAACGCAACAAATA
CTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTCACCAGCATTCTG
TCCGTTTTTGGGACTCTATTCAACGCTTACATTATTCAACATTTTTATAA
GAAACTATCATCTTCACAAAAACGAAAAAATATCAACACTCTAATGCTTG
GACAATCCATTGTTGATTTTTACAATTCTGCCATTGCCGGTCCGTCAAAT
GCAGTTTACTATTTTGGAAGTTACCATTATGGAAGTGTTTTTGAAAAGAC
ATTGTATTTCAAATTAATTGATATCATTTCACCAAGTTTATACGTGACAT
CATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCTATCGATCGGTTG
TTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTCCACTCCAAAGAA
GTTAAAGAAAAAAGACACTGCGACCATCTGAAGATGAAACTGCAGTAGAA
AGAAACAAACGAAAACTTCAAGAAAAACATTTAATGCAAATGTTTGCTCT
CATGTTCTTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATATTTTGGT
TTATGGATAACAAAGGACTTTACCAAGAAAATCCCGAAGTAATCATCGCA
TGGCATTGCTCCTCAACAACATTCGCTTTATCATCTGCTTGCAATCCACT
TTTTATGATGTATTACGCACCTGACTTCAAGCGAAAAATCTTTTTTTGGA
GAAAACAAAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAGTTCAGAA
GTGGTGATATGTATTAAATATGGAGTGAATAAACTCTCAGGTCATGGAAA
TAGCATCAATAATGACTCAACGTCGAAGCTAATCAACTTATTAAAATATC
ATAATTCAGTTCTATAAACATGTATGGTTTTTATGTGGATTGGATCGATC
TTATTTTCTTGTGTTGGCGAAGTTTTCTGTCATATATGGAAAAACTTTTA
TAACAATCCTTCGTACACAATTCGATATCATGTTTGGATTCTAGTTTTGG
ATACTATACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCACGATATTC
ACTTCTTGTTCCGCTATCAAGAAGGCCTTTGAAAGATGGCCATCAACGCA
ACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATATTCACCAG
CATTCTGTCCGTTTTTGGGACTCTATTCAACGCTTACATTATTCAACATT
TTTATAAGAAACTATCATCTTCACAAAAACGAAAAAATATCAACACTCTA
ATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTGCCGGTCC
GTCAAATGCAGTTTACTATTTTGGAAGTTACCATTATGGAAGTGTTTTTG
AAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAGTTTATAC
GTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAGCTATCGA
TCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCGTCCACTC
CAAAGAAGTTAAAGAAAAAAGACACTGCGACCATCTGAAGATGAAACTGC
AGTAGAAAGAAACAAACGAAAACTTCAAGAAAAACATTTAATGCAAATGT
TTGCTCTCATGTTCTTTATATTCGCTCTGGCTTTCATTCCAAGTTTAATA
TTTTGGTTTATGGATAACAAAGGACTTTACCAAGAAAATCCCGAAGTAAT
CATCGCATGGCATTGCTCCTCAACAACATTCGCTTTATCATCTGCTTGCA
ATCCACTTTTTATGATGTATTACGCACCTGACTTCAAGCGAAAAATCTTT
TTTTGGAGAAAACAAAATAGCACTTTAGTAACTGAGAGTCAAGTAACAAG
TTCAGAAGTGGTGATATGTATTAAATATGGAGTGAATAAACTCTCAGGTC
ATGGAAATAGCATCAATAATGACTCAACGTCGAAGCTAATCAACTTATTA
AAATATCATAATTCAGTTCTATAAACATGTATGGTTTTTATGTGGATTGG
ATCGATCTTATTTTCTTGTGTTGGCGAAGTTTTCTGTCATATATGGAAAA
ACTTTTATAACAATCCTTCGTACACAATTCGATATCATGTTTGGATTCTA
GTTTTGGATACTATACTTGTTGTCCTCATTGCACTTTTGTGGGTTTCCAC
GATATTCACTTCTTGTTCCGCTATCAAGAAGGCCTTTGAAAGATGGCCAT
CAACGCAACAAATACTGCTCTCCAGACCTCCAATTTGCTAAATGGTATAT
TCACCAGCATTCTGTCCGTTTTTGGGACTCTATTCAACGCTTACATTATT
CAACATTTTTATAAGAAACTATCATCTTCACAAAAACGAAAAAATATCAA
CACTCTAATGCTTGGACAATCCATTGTTGATTTTTACAATTCTGCCATTG
CCGGTCCGTCAAATGCAGTTTACTATTTTGGAAGTTACCATTATGGAAGT
GTTTTTGAAAAGACATTGTATTTCAAATTAATTGATATCATTTCACCAAG
TTTATACGTGACATCATTGCAAATTAGTATGCTGTGTTTTCTGCTGACAG
CTATCGATCGGTTGTTATCAATCACATTCCCAGTCTTCCACCATGTAGCG
TCCACTCCAAAGAAGTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001681-exon-sc0000011-1575043694:588923..589391 | TCONS_00001681-exon-sc0000011-1575043694:588923..589391 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1575043694:587824..588041 | TCONS_00001681-exon-sc0000011-1575043694:587824..588041 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1575043694:586244..587130 | TCONS_00001681-exon-sc0000011-1575043694:586244..587130 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1510915933:588923..589391 | TCONS_00001681-exon-sc0000011-1510915933:588923..589391 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1510915933:587824..588041 | TCONS_00001681-exon-sc0000011-1510915933:587824..588041 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1510915933:586244..587130 | TCONS_00001681-exon-sc0000011-1510915933:586244..587130 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1491911889:588923..589391 | TCONS_00001681-exon-sc0000011-1491911889:588923..589391 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1491911889:587824..588041 | TCONS_00001681-exon-sc0000011-1491911889:587824..588041 | Clytia hemisphaerica | exon |
| TCONS_00001681-exon-sc0000011-1491911889:586244..587130 | TCONS_00001681-exon-sc0000011-1491911889:586244..587130 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:586244..589391 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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