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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001676 ID=TCONS_00001676|Name=TCONS_00001676|organism=Clytia hemisphaerica|type=transcript|length=1438bp
GTCTCACGTTAAGGTCGCAGATTGATAGCGTAGGTTTTTTTCTGACTGAT
CGGCTCCCACTAGCAAATTTTTGCTTGGTCATTTTGTAGAACTCGTCGTC
GtcgaaagaaattttaaagaagGCAGAACATGTTCGTTCATGTGATTTTG
ATTCTGTATCCATTGATCATCACTGTCAATAATTTTCTTATTGACAACGA
GCAAGGATACATTTCATCTCAAGATATCTCAATCAtcaaagaaatcagta
atgtccAATCACAAATGAATTGTCTTCACAAATGTGTTCGCATTTCAACG
AAAGTTAAAGTCTTTTACAACCGCGAAAATATTTGTatttgttttgaaga
aaagacTGGGAACAAGAATATTGTGAAGAGGAATGGGGACGAATTATATG
GGAGAATCATGTCAGTTATAAAGGCTCAAGAAATAAATCCAGTAGTCAAT
GGTCCATCTCGTATTATGACGACAAGCCAATTAACTACTGCGATTGCTCA
AATAACTACGACGGCCGCCTCACTAACTATAACGACGGCTGCTCAACGAA
AGATTACAACGACCACCGCTCAACTAAAGATTACAACGACCACCGCTCAA
CTAAAGATTACAACGATGCCATTCGAGGTCTTGCGATCATCAACAGGAGC
TAGTGGATCATTTAGCTTGATCAGTGACACCAATCTGACAACGTGCTTTT
ATACACAAATAGTGGATGATCCATATGTCGTTTTCCGACTTAACGTCCCT
GTTTTAGAAGTCATTGTCACTGTCATCCGACCTGAATCTGTTATATCGCT
TGGATCTAGTAGTAAAGAAGATTTCCAAATATATTCATTTGCTAACGGAA
ATTTAGATAAATGTTCAAATAAAGTTGATGTCCACACAACCACACCTGTT
TTTAACTTAACATGTTCAACTGATGATGTTACCAAAGCtttcagtaaaat
aaaaattgtcaAAGAGGAGGATTCACGTGCTTTGATGTTGTGTGAGATAG
CAGTCATCCTCGTTCGATCTGTTCATTAAACCAATCACAATCGCGACCAG
CTAAAGACTTCCGCAAACTAAACTATAGACTAAAGAAGAAGAGAAAACTA
AAATCTAGTTGTAATTGTAGAAATAGATGATACTAtttcacacccctgtg
tcacagacccgctgggaccccagcccactgaaaaatttggccaaaatttc
gtccctggtgGACAAAAAACATACCGtgtaatttcagccccactgggaaa
ttgactttgatttcatccccattcgaaattcaatgcaaaaatttactgtc
caaaaccatcccaactgGATATTTTAAACgcgggaacaatagaattttta
tccccattgggatttcgatagaccggggctgtgagacaggggtgttattt
caaatatttacaaTATGTTCAAAAAAAAAGTACATTTC Run BLAST on NCBI protein sequence of TCONS_00001676-protein >TCONS_00001676-protein ID=TCONS_00001676-protein|Name=TCONS_00001676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MFVHVILILYPLIITVNNFLIDNEQGYISSQDISIIKEISNVQSQMNCLH
KCVRISTKVKVFYNRENICICFEEKTGNKNIVKRNGDELYGRIMSVIKAQ
EINPVVNGPSRIMTTSQLTTAIAQITTTAASLTITTAAQRKITTTTAQLK
ITTTTAQLKITTMPFEVLRSSTGASGSFSLISDTNLTTCFYTQIVDDPYV
VFRLNVPVLEVIVTVIRPESVISLGSSSKEDFQIYSFANGNLDKCSNKVD
VHTTTPVFNLTCSTDDVTKAFSKIKIVKEEDSRALMLCEIAVILVRSVH Run BLAST on NCBI transcript from alignment at sc0000011:483840..485573- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001676 ID=TCONS_00001676|Name=TCONS_00001676|organism=Clytia hemisphaerica|type=transcript|length=1734bp|location=Sequence derived from alignment at sc0000011:483840..485573- (Clytia hemisphaerica)
GTCTCACGTTAAGGTCGCAGATTGATAGCGTAGGTTTTTTTCTGACTGAT
CGGCTCCCACTAGCAAATTTTTGCTTGGTCATTTTGTAGAACTCGTCGTC
GTCGAAAGAAATTTTAAAGAAGGCAGAACATGTTCGTTCATGTGATTTTG
ATTCTGTATCCATTGATCATCACTGTCAATAATTTTCTTATTGACAACGA
GCAAGGATACATTTCATCTCAAGATATCTCAATCATCAAAGAAATCAGTA
ATGTCCAATCACAAATGAATTGTCTTCACAAATGTGTTCGCATTTCAACG
AAAGTTAAAGTCTTTTACAACCGCGAAAATATTTGTATTTGTTTTGAAGA
AAAGACTGGGAACAAGAATATTGTGAAGAGGAATGGGGACGAATTATATG
GGAGAATCATGTCAGTTATAAAGGTATGAAATATCATTTTTGTCAAGAAT
CTCTAGAATTTTAGCGAGTCTGCGTTATAATATTCCTCAAATCTCTCTAA
TTTTATCGTATCTCGTCTAAAGATATTGTGTTATAGCTTGTCAAGAATGA
ATTAATTCGCTTGATTCCAGGCTATTAACTTATATCATGGCCAAGTTATA
GGTGTGATTAAGTCAGCTATTCGATTAAGAGGGTTCGAATGGCTCTGGCA
AATCTGACGTCTGCATAATTGTCTTCGATTATGAATTGTCGCATCATTTT
CATTTTTCCATTTTTATAGGCTCAAGAAATAAATCCAGTAGTCAATGGTC
CATCTCGTATTATGACGACAAGCCAATTAACTACTGCGATTGCTCAAATA
ACTACGACGGCCGCCTCACTAACTATAACGACGGCTGCTCAACGAAAGAT
TACAACGACCACCGCTCAACTAAAGATTACAACGACCACCGCTCAACTAA
AGATTACAACGATGCCATTCGAGGTCTTGCGATCATCAACAGGAGCTAGT
GGATCATTTAGCTTGATCAGTGACACCAATCTGACAACGTGCTTTTATAC
ACAAATAGTGGATGATCCATATGTCGTTTTCCGACTTAACGTCCCTGTTT
TAGAAGTCATTGTCACTGTCATCCGACCTGAATCTGTTATATCGCTTGGA
TCTAGTAGTAAAGAAGATTTCCAAATATATTCATTTGCTAACGGAAATTT
AGATAAATGTTCAAATAAAGTTGATGTCCACACAACCACACCTGTTTTTA
ACTTAACATGTTCAACTGATGATGTTACCAAAGCTTTCAGTAAAATAAAA
ATTGTCAAAGAGGAGGATTCACGTGCTTTGATGTTGTGTGAGATAGCAGT
CATCCTCGTTCGATCTGTTCATTAAACCAATCACAATCGCGACCAGCTAA
AGACTTCCGCAAACTAAACTATAGACTAAAGAAGAAGAGAAAACTAAAAT
CTAGTTGTAATTGTAGAAATAGATGATACTATTTCACACCCCTGTGTCAC
AGACCCGCTGGGACCCCAGCCCACTGAAAAATTTGGCCAAAATTTCGTCC
CTGGTGGACAAAAAACATACCGTGTAATTTCAGCCCCACTGGGAAATTGA
CTTTGATTTCATCCCCATTCGAAATTCAATGCAAAAATTTACTGTCCAAA
ACCATCCCAACTGGATATTTTAAACGCGGGAACAATAGAATTTTTATCCC
CATTGGGATTTCGATAGACCGGGGCTGTGAGACAGGGGTGTTATTTCAAA
TATTTACAATATGTTCAAAAAAAAAGTACATTTC Coding sequence (CDS) from alignment at sc0000011:483840..485573- >TCONS_00001676 ID=TCONS_00001676|Name=TCONS_00001676|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000011:483840..485573- (Clytia hemisphaerica)
GCTCAAGAAATAAATCCAGTAGTCAATGGTCCATCTCGTATTATGACGAC
AAGCCAATTAACTACTGCGATTGCTCAAATAACTACGACGGCCGCCTCAC
TAACTATAACGACGGCTGCTCAACGAAAGATTACAACGACCACCGCTCAA
CTAAAGATTACAACGACCACCGCTCAACTAAAGATTACAACGATGCCATT
CGAGGTCTTGCGATCATCAACAGGAGCTAGTGGATCATTTAGCTTGATCA
GTGACACCAATCTGACAACGTGCTTTTATACACAAATAGTGGATGATCCA
TATGTCGTTTTCCGACTTAACGTCCCTGTTTTAGAAGTCATTGTCACTGT
CATCCGACCTGAATCTGTTATATCGCTTGGATCTAGTAGTAAAGAAGATT
TCCAAATATATTCATTTGCTAACGGAAATTTAGATAAATGTTCAAATAAA
GTTGATGTCCACACAACCACACCTGTTTTTAACTTAACATGTTCAACTGA
TGATGTTACCAAAGCTTTCAGTAAAATAAAAATTGTCAAAGAGGAGGATT
CACGTGCTTTGATGTTGTGTGAGATAGCAGTCATCCTCGTTCGATCTGTT
CATTAAATGTTCGTTCATGTGATTTTGATTCTGTATCCATTGATCATCAC
TGTCAATAATTTTCTTATTGACAACGAGCAAGGATACATTTCATCTCAAG
ATATCTCAATCATCAAAGAAATCAGTAATGTCCAATCACAAATGAATTGT
CTTCACAAATGTGTTCGCATTTCAACGAAAGTTAAAGTCTTTTACAACCG
CGAAAATATTTGTATTTGTTTTGAAGAAAAGACTGGGAACAAGAATATTG
TGAAGAGGAATGGGGACGAATTATATGGGAGAATCATGTCAGTTATAAAG
GCTCAAGAAATAAATCCAGTAGTCAATGGTCCATCTCGTATTATGACGAC
AAGCCAATTAACTACTGCGATTGCTCAAATAACTACGACGGCCGCCTCAC
TAACTATAACGACGGCTGCTCAACGAAAGATTACAACGACCACCGCTCAA
CTAAAGATTACAACGACCACCGCTCAACTAAAGATTACAACGATGCCATT
CGAGGTCTTGCGATCATCAACAGGAGCTAGTGGATCATTTAGCTTGATCA
GTGACACCAATCTGACAACGTGCTTTTATACACAAATAGTGGATGATCCA
TATGTCGTTTTCCGACTTAACGTCCCTGTTTTAGAAGTCATTGTCACTGT
CATCCGACCTGAATCTGTTATATCGCTTGGATCTAGTAGTAAAGAAGATT
TCCAAATATATTCATTTGCTAACGGAAATTTAGATAAATGTTCAAATAAA
GTTGATGTCCACACAACCACACCTGTTTTTAACTTAACATGTTCAACTGA
TGATGTTACCAAAGCTTTCAGTAAAATAAAAATTGTCAAAGAGGAGGATT
CACGTGCTTTGATGTTGTGTGAGATAGCAGTCATCCTCGTTCGATCTGTT
CATTAAATGTTCGTTCATGTGATTTTGATTCTGTATCCATTGATCATCAC
TGTCAATAATTTTCTTATTGACAACGAGCAAGGATACATTTCATCTCAAG
ATATCTCAATCATCAAAGAAATCAGTAATGTCCAATCACAAATGAATTGT
CTTCACAAATGTGTTCGCATTTCAACGAAAGTTAAAGTCTTTTACAACCG
CGAAAATATTTGTATTTGTTTTGAAGAAAAGACTGGGAACAAGAATATTG
TGAAGAGGAATGGGGACGAATTATATGGGAGAATCATGTCAGTTATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001676-exon-sc0000011-1575043694:485151..485573 | TCONS_00001676-exon-sc0000011-1575043694:485151..485573 | Clytia hemisphaerica | exon |
| TCONS_00001676-exon-sc0000011-1575043694:483840..484854 | TCONS_00001676-exon-sc0000011-1575043694:483840..484854 | Clytia hemisphaerica | exon |
| TCONS_00001676-exon-sc0000011-1510915933:485151..485573 | TCONS_00001676-exon-sc0000011-1510915933:485151..485573 | Clytia hemisphaerica | exon |
| TCONS_00001676-exon-sc0000011-1510915933:483840..484854 | TCONS_00001676-exon-sc0000011-1510915933:483840..484854 | Clytia hemisphaerica | exon |
| TCONS_00001676-exon-sc0000011-1491911889:485151..485573 | TCONS_00001676-exon-sc0000011-1491911889:485151..485573 | Clytia hemisphaerica | exon |
| TCONS_00001676-exon-sc0000011-1491911889:483840..484854 | TCONS_00001676-exon-sc0000011-1491911889:483840..484854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:483840..485573 - |
Blast
The following BLAST results are available for this feature:
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