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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001675 ID=TCONS_00001675|Name=TCONS_00001675|organism=Clytia hemisphaerica|type=transcript|length=906bp
aaaaaacaatataacaAAACAATGGAATCGATTGGTTAATACTGAAAATT
TcctgtattttgattggttgagagAACTACTAACTACTTGAATAATGGAT
TTGATTGGTCGATTGGGTTCCTCGTTTCCTATTTTCTACATCAATCCGTT
TTCAACAACACACGTTAAGCTTCAGCATCATCATCCAGAGGCGATCACCA
CAACAAACCAGAGGACATCACCATCCTTTGTCGCTCATCACAAAAGATCC
TATTCGACATCACCGCGCGGGCATGGGCGATCGCGATCTCTGTCATCAGG
TTATCATCGAAATTACAACACTTTACCAACCAAATCCTCTTCAAGAGCAA
AGAGCTTGACAGCTTTGGATCAAGTCGGGACATCGAGTTTAAATCGATTA
CAATCGATTCAACATTCAAACTCTGTTGAATATCTCAGTCAATCTTTCGA
CGATACAAAATCAAGAACAGCATTTGTTGATGATTTAGATACGTTGAATT
TGTATGgatttgataaaatattgaatGATTTTTCAACAAGTATTTCATCC
TCATCACATTCACCAGTTAGTTCACTACCTAAAAATCGTACTTTAACGTT
aattaaagaagaaaattcgtTCGAAGAAGAACAAGAGGAGGAGGAAGAAG
AGAGCattgataaaaatgaaatgaagagTTTGTTATGTAACGAAGAAGTG
AATGAAGAAACAATCGAGACAACGAATCACATTGAAACAAAACCACACGA
TGATTTAGAATCACCAGAGAAAATGTATTTCCAATTGACCAGTACAGCCT
CTACTAAATTACTATCGACACCTGATAGATTGGAAACATCAAATACTTGT
TTTAGAGTATACGAAGAAAACACAGATTCTCGTTGTGAGGACAGAATCTC
GACTAA Run BLAST on NCBI protein sequence of TCONS_00001675-protein >TCONS_00001675-protein ID=TCONS_00001675-protein|Name=TCONS_00001675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MDLIGRLGSSFPIFYINPFSTTHVKLQHHHPEAITTTNQRTSPSFVAHHK
RSYSTSPRGHGRSRSLSSGYHRNYNTLPTKSSSRAKSLTALDQVGTSSLN
RLQSIQHSNSVEYLSQSFDDTKSRTAFVDDLDTLNLYGFDKILNDFSTSI
SSSSHSPVSSLPKNRTLTLIKEENSFEEEQEEEEEESIDKNEMKSLLCNE
EVNEETIETTNHIETKPHDDLESPEKMYFQLTSTASTKLLSTPDRLETSN
TCFRVYEENTDSRCEDRIST Run BLAST on NCBI transcript from alignment at sc0000011:450406..451388- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001675 ID=TCONS_00001675|Name=TCONS_00001675|organism=Clytia hemisphaerica|type=transcript|length=983bp|location=Sequence derived from alignment at sc0000011:450406..451388- (Clytia hemisphaerica)
AAAAAACAATATAACAAAACAATGGAATCGATTGGTTAATACTGAAAATT
TCCTGTATTTTGATTGGTTGAGAGAACTACTAACTACANAACAAAACAAT
GGAATCGATTGGTTAATACTGAAAATTTCCTGTATTTTGATTGGTTCAGA
GAACTACCAGCCACTTGAATAATGGATTTGATTGGTCGATTGGGTTCCTC
GTTTCCTATTTTCTACATCAATCCGTTTTCAACAACACACGTTAAGCTTC
AGCATCATCATCCAGAGGCGATCACCACAACAAACCAGAGGACATCACCA
TCCTTTGTCGCTCATCACAAAAGATCCTATTCGACATCACCGCGCGGGCA
TGGGCGATCGCGATCTCTGTCATCAGGTTATCATCGAAATTACAACACTT
TACCAACCAAATCCTCTTCAAGAGCAAAGAGCTTGACAGCTTTGGATCAA
GTCGGGACATCGAGTTTAAATCGATTACAATCGATTCAACATTCAAACTC
TGTTGAATATCTCAGTCAATCTTTCGACGATACAAAATCAAGAACAGCAT
TTGTTGATGATTTAGATACGTTGAATTTGTATGGATTTGATAAAATATTG
AATGATTTTTCAACAAGTATTTCATCCTCATCACATTCACCAGTTAGTTC
ACTACCTAAAAATCGTACTTTAACGTTAATTAAAGAAGAAAATTCGTTCG
AAGAAGAACAAGAGGAGGAGGAAGAAGAGAGCATTGATAAAAATGAAATG
AAGAGTTTGTTATGTAACGAAGAAGTGAATGAAGAAACAATCGAGACAAC
GAATCACATTGAAACAAAACCACACGATGATTTAGAATCACCAGAGAAAA
TGTATTTCCAATTGACCAGTACAGCCTCTACTAAATTACTATCGACACCT
GATAGATTGGAAACATCAAATACTTGTTTTAGAGTATACGAAGAAAACAC
AGATTCTCGTTGTGAGGACAGAATCTCGACTAA Coding sequence (CDS) from alignment at sc0000011:450406..451388- >TCONS_00001675 ID=TCONS_00001675|Name=TCONS_00001675|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000011:450406..451388- (Clytia hemisphaerica)
ATGGATTTGATTGGTCGATTGGGTTCCTCGTTTCCTATTTTCTACATCAA
TCCGTTTTCAACAACACACGTTAAGCTTCAGCATCATCATCCAGAGGCGA
TCACCACAACAAACCAGAGGACATCACCATCCTTTGTCGCTCATCACAAA
AGATCCTATTCGACATCACCGCGCGGGCATGGGCGATCGCGATCTCTGTC
ATCAGGTTATCATCGAAATTACAACACTTTACCAACCAAATCCTCTTCAA
GAGCAAAGAGCTTGACAGCTTTGGATCAAGTCGGGACATCGAGTTTAAAT
CGATTACAATCGATTCAACATTCAAACTCTGTTGAATATCTCAGTCAATC
TTTCGACGATACAAAATCAAGAACAGCATTTGTTGATGATTTAGATACGT
TGAATTTGTATGGATTTGATAAAATATTGAATGATTTTTCAACAAGTATT
TCATCCTCATCACATTCACCAGTTAGTTCACTACCTAAAAATCGTACTTT
AACGTTAATTAAAGAAGAAAATTCGTTCGAAGAAGAACAAGAGGAGGAGG
AAGAAGAGAGCATTGATAAAAATGAAATGAAGAGTTTGTTATGTAACGAA
GAAGTGAATGAAGAAACAATCGAGACAACGAATCACATTGAAACAAAACC
ACACGATGATTTAGAATCACCAGAGAAAATGTATTTCCAATTGACCAGTA
CAGCCTCTACTAAATTACTATCGACACCTGATAGATTGGAAACATCAAAT
ACTTGTTTTAGAGTATACGAAGAAAACACAGATTCTCGTTGTGAGGACAG
AATCTCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001675-exon-sc0000011-1575043694:451302..451388 | TCONS_00001675-exon-sc0000011-1575043694:451302..451388 | Clytia hemisphaerica | exon |
| TCONS_00001675-exon-sc0000011-1575043694:450406..451224 | TCONS_00001675-exon-sc0000011-1575043694:450406..451224 | Clytia hemisphaerica | exon |
| TCONS_00001675-exon-sc0000011-1510915933:451302..451388 | TCONS_00001675-exon-sc0000011-1510915933:451302..451388 | Clytia hemisphaerica | exon |
| TCONS_00001675-exon-sc0000011-1510915933:450406..451224 | TCONS_00001675-exon-sc0000011-1510915933:450406..451224 | Clytia hemisphaerica | exon |
| TCONS_00001675-exon-sc0000011-1491911889:451302..451388 | TCONS_00001675-exon-sc0000011-1491911889:451302..451388 | Clytia hemisphaerica | exon |
| TCONS_00001675-exon-sc0000011-1491911889:450406..451224 | TCONS_00001675-exon-sc0000011-1491911889:450406..451224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:450406..451388 - |
Blast
The following BLAST results are available for this feature:
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