TCONS_00001675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001675
Unique NameTCONS_00001675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001675 ID=TCONS_00001675|Name=TCONS_00001675|organism=Clytia hemisphaerica|type=transcript|length=906bp
aaaaaacaatataacaAAACAATGGAATCGATTGGTTAATACTGAAAATT
TcctgtattttgattggttgagagAACTACTAACTACTTGAATAATGGAT
TTGATTGGTCGATTGGGTTCCTCGTTTCCTATTTTCTACATCAATCCGTT
TTCAACAACACACGTTAAGCTTCAGCATCATCATCCAGAGGCGATCACCA
CAACAAACCAGAGGACATCACCATCCTTTGTCGCTCATCACAAAAGATCC
TATTCGACATCACCGCGCGGGCATGGGCGATCGCGATCTCTGTCATCAGG
TTATCATCGAAATTACAACACTTTACCAACCAAATCCTCTTCAAGAGCAA
AGAGCTTGACAGCTTTGGATCAAGTCGGGACATCGAGTTTAAATCGATTA
CAATCGATTCAACATTCAAACTCTGTTGAATATCTCAGTCAATCTTTCGA
CGATACAAAATCAAGAACAGCATTTGTTGATGATTTAGATACGTTGAATT
TGTATGgatttgataaaatattgaatGATTTTTCAACAAGTATTTCATCC
TCATCACATTCACCAGTTAGTTCACTACCTAAAAATCGTACTTTAACGTT
aattaaagaagaaaattcgtTCGAAGAAGAACAAGAGGAGGAGGAAGAAG
AGAGCattgataaaaatgaaatgaagagTTTGTTATGTAACGAAGAAGTG
AATGAAGAAACAATCGAGACAACGAATCACATTGAAACAAAACCACACGA
TGATTTAGAATCACCAGAGAAAATGTATTTCCAATTGACCAGTACAGCCT
CTACTAAATTACTATCGACACCTGATAGATTGGAAACATCAAATACTTGT
TTTAGAGTATACGAAGAAAACACAGATTCTCGTTGTGAGGACAGAATCTC
GACTAA
Run BLAST on NCBI

protein sequence of TCONS_00001675-protein

>TCONS_00001675-protein ID=TCONS_00001675-protein|Name=TCONS_00001675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MDLIGRLGSSFPIFYINPFSTTHVKLQHHHPEAITTTNQRTSPSFVAHHK
RSYSTSPRGHGRSRSLSSGYHRNYNTLPTKSSSRAKSLTALDQVGTSSLN
RLQSIQHSNSVEYLSQSFDDTKSRTAFVDDLDTLNLYGFDKILNDFSTSI
SSSSHSPVSSLPKNRTLTLIKEENSFEEEQEEEEEESIDKNEMKSLLCNE
EVNEETIETTNHIETKPHDDLESPEKMYFQLTSTASTKLLSTPDRLETSN
TCFRVYEENTDSRCEDRIST
Run BLAST on NCBI

transcript from alignment at sc0000011:450406..451388-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001675 ID=TCONS_00001675|Name=TCONS_00001675|organism=Clytia hemisphaerica|type=transcript|length=983bp|location=Sequence derived from alignment at sc0000011:450406..451388- (Clytia hemisphaerica)
AAAAAACAATATAACAAAACAATGGAATCGATTGGTTAATACTGAAAATT TCCTGTATTTTGATTGGTTGAGAGAACTACTAACTACANAACAAAACAAT GGAATCGATTGGTTAATACTGAAAATTTCCTGTATTTTGATTGGTTCAGA GAACTACCAGCCACTTGAATAATGGATTTGATTGGTCGATTGGGTTCCTC GTTTCCTATTTTCTACATCAATCCGTTTTCAACAACACACGTTAAGCTTC AGCATCATCATCCAGAGGCGATCACCACAACAAACCAGAGGACATCACCA TCCTTTGTCGCTCATCACAAAAGATCCTATTCGACATCACCGCGCGGGCA TGGGCGATCGCGATCTCTGTCATCAGGTTATCATCGAAATTACAACACTT TACCAACCAAATCCTCTTCAAGAGCAAAGAGCTTGACAGCTTTGGATCAA GTCGGGACATCGAGTTTAAATCGATTACAATCGATTCAACATTCAAACTC TGTTGAATATCTCAGTCAATCTTTCGACGATACAAAATCAAGAACAGCAT TTGTTGATGATTTAGATACGTTGAATTTGTATGGATTTGATAAAATATTG AATGATTTTTCAACAAGTATTTCATCCTCATCACATTCACCAGTTAGTTC ACTACCTAAAAATCGTACTTTAACGTTAATTAAAGAAGAAAATTCGTTCG AAGAAGAACAAGAGGAGGAGGAAGAAGAGAGCATTGATAAAAATGAAATG AAGAGTTTGTTATGTAACGAAGAAGTGAATGAAGAAACAATCGAGACAAC GAATCACATTGAAACAAAACCACACGATGATTTAGAATCACCAGAGAAAA TGTATTTCCAATTGACCAGTACAGCCTCTACTAAATTACTATCGACACCT GATAGATTGGAAACATCAAATACTTGTTTTAGAGTATACGAAGAAAACAC AGATTCTCGTTGTGAGGACAGAATCTCGACTAA

Coding sequence (CDS) from alignment at sc0000011:450406..451388-

>TCONS_00001675 ID=TCONS_00001675|Name=TCONS_00001675|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000011:450406..451388- (Clytia hemisphaerica)
ATGGATTTGATTGGTCGATTGGGTTCCTCGTTTCCTATTTTCTACATCAA
TCCGTTTTCAACAACACACGTTAAGCTTCAGCATCATCATCCAGAGGCGA
TCACCACAACAAACCAGAGGACATCACCATCCTTTGTCGCTCATCACAAA
AGATCCTATTCGACATCACCGCGCGGGCATGGGCGATCGCGATCTCTGTC
ATCAGGTTATCATCGAAATTACAACACTTTACCAACCAAATCCTCTTCAA
GAGCAAAGAGCTTGACAGCTTTGGATCAAGTCGGGACATCGAGTTTAAAT
CGATTACAATCGATTCAACATTCAAACTCTGTTGAATATCTCAGTCAATC
TTTCGACGATACAAAATCAAGAACAGCATTTGTTGATGATTTAGATACGT
TGAATTTGTATGGATTTGATAAAATATTGAATGATTTTTCAACAAGTATT
TCATCCTCATCACATTCACCAGTTAGTTCACTACCTAAAAATCGTACTTT
AACGTTAATTAAAGAAGAAAATTCGTTCGAAGAAGAACAAGAGGAGGAGG
AAGAAGAGAGCATTGATAAAAATGAAATGAAGAGTTTGTTATGTAACGAA
GAAGTGAATGAAGAAACAATCGAGACAACGAATCACATTGAAACAAAACC
ACACGATGATTTAGAATCACCAGAGAAAATGTATTTCCAATTGACCAGTA
CAGCCTCTACTAAATTACTATCGACACCTGATAGATTGGAAACATCAAAT
ACTTGTTTTAGAGTATACGAAGAAAACACAGATTCTCGTTGTGAGGACAG
AATCTCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000869XLOC_000869Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001675-proteinTCONS_00001675-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001675-exon-sc0000011-1575043694:451302..451388TCONS_00001675-exon-sc0000011-1575043694:451302..451388Clytia hemisphaericaexon
TCONS_00001675-exon-sc0000011-1575043694:450406..451224TCONS_00001675-exon-sc0000011-1575043694:450406..451224Clytia hemisphaericaexon
TCONS_00001675-exon-sc0000011-1510915933:451302..451388TCONS_00001675-exon-sc0000011-1510915933:451302..451388Clytia hemisphaericaexon
TCONS_00001675-exon-sc0000011-1510915933:450406..451224TCONS_00001675-exon-sc0000011-1510915933:450406..451224Clytia hemisphaericaexon
TCONS_00001675-exon-sc0000011-1491911889:451302..451388TCONS_00001675-exon-sc0000011-1491911889:451302..451388Clytia hemisphaericaexon
TCONS_00001675-exon-sc0000011-1491911889:450406..451224TCONS_00001675-exon-sc0000011-1491911889:450406..451224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:450406..451388 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101801 0.0496361 0.0576323 0 2.33384 1.84423 0.392645 0.612649 1.37258 0.796948 0.257846 1.01699 0.473934 0.703121 1.73418 1.14764 0.534953 1.40994 0.541085 1.13241 0.442923 1.08021 0.233447 0.530592 1.69414 1.60953 0.348974 0.670383 0.734445 0.748283
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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