TCONS_00001649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001649
Unique NameTCONS_00001649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001649 ID=TCONS_00001649|Name=TCONS_00001649|organism=Clytia hemisphaerica|type=transcript|length=1505bp
atcctttttgaccatctcgtagacaagcttgaagtccttctttcagtttg
ttttcacttttttacttgaaagcttcttgcaaaattttgaaccaaaataa
aatttaaaaaggatgcgctatcagtgaaagttatcgtcatgttatgacag
aaagtatgattgataaacttggtggagttatcaaagcAAATTTGTTGTCT
CCTTCGCCTGTTCGAAATCTCTATTCTAAAAAAGATTGGTTTTGTGGTAT
TTGAATGCTTTATATTTGTACTTGTTGCTTATTTTGGTCTGTTTatctca
aacttttttttcaaaaaaagtgaaatacaTACCATGCAAGGCTTGATCCT
TTGGTCACCCTAATTCATATCTTTGTAGAGTGTCTAGTTATATTACCGTA
AATACCTTAACTATACTTGTCTTTAGTTAGCTTTATTCTCAAAATGATTT
AACACCAGTATTGCAATTTCAATTTTAGTGTAGAATATTATATGTTAATA
TGAAGACTTGGGCTATAATTACTGGAGCAGGAACTGGAATTGGGGCAGCC
TTGGtaaaagaactttcaaaattgaattCATTTAGTATTCTAGCCTTAGG
GAGACGAATTGCTCCTCTAGAAAAGACAAAATCAGAATGCGAAAATAAGG
ATCAAGTAACAGTTATAtctgctgacatcagcaaaaatGATGATctccaa
aaaatcaaatcaataatttcTCCAGAAGacaatgtcaaatttttggtaCA
AAATGCAGCTGTCGGTTTACCTGACAAACTGATGGATATCAAAAGAGAAG
ATTTCGAATATGCACTTGCAGTCAATGTGACTGCTCCTTTGCTTTTATCT
CAAATGTTTTTACCACAGTTATCCAAATGCAAAGGAAGAATCATTCATAT
TGGAACAGGAGTTGCTTTCAATCCTCAGGTCGGAACTTCGACTTATGGTA
TAACTAAAATGGCTTTCCATCGTTTATATACTCAACTTCAAGTTGAATTG
AAAGGCACAGGTGCACAAATTGCCATGGTTCTTCCTGGAGTTGTTGATAC
CGAAGGCTTGTGGGATCATTACGATTTAGCCAAAAAACAAGAGTTGCCCC
ATACAGCATATTTTGATCAGGTCAAACGAGAAGGGAAAATATTGTCTTCA
GAGGCTTCAGCTAAATTCTTAAAATATGTCATGTGTGACACAAGTGAGGA
AGACTTCCCCAAAGAATGGAATGCCAATAACGAAAGCCTGTGGTCACTTT
GGAAAAATTAAGTCAtatgtttgaagaaaaaaacaaaaaattttttaatg
acaTGTAGGTGGAGCATagtatttccattttttttttaattctatagatt
aatttttgtatatttttaggaaaaaaggactatttcaaataaaattgatt
ataaatattttgatgGAGAACAAAACTGATTGAATATAGTTTGATTTGTG
TTGGGAAAATGTCCATATTAAGATAGACACAAAAAATAGTAAGTACCCAA
Tcctt
Run BLAST on NCBI

transcript from alignment at sc0000011:244010..245514-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001649 ID=TCONS_00001649|Name=TCONS_00001649|organism=Clytia hemisphaerica|type=transcript|length=1505bp|location=Sequence derived from alignment at sc0000011:244010..245514- (Clytia hemisphaerica)
ATCCTTTTTGACCATCTCGTAGACAAGCTTGAAGTCCTTCTTTCAGTTTG TTTTCACTTTTTTACTTGAAAGCTTCTTGCAAAATTTTGAACCAAAATAA AATTTAAAAAGGATGCGCTATCAGTGAAAGTTATCGTCATGTTATGACAG AAAGTATGATTGATAAACTTGGTGGAGTTATCAAAGCAAATTTGTTGTCT CCTTCGCCTGTTCGAAATCTCTATTCTAAAAAAGATTGGTTTTGTGGTAT TTGAATGCTTTATATTTGTACTTGTTGCTTATTTTGGTCTGTTTATCTCA AACTTTTTTTTCAAAAAAAGTGAAATACATACCATGCAAGGCTTGATCCT TTGGTCACCCTAATTCATATCTTTGTAGAGTGTCTAGTTATATTACCGTA AATACCTTAACTATACTTGTCTTTAGTTAGCTTTATTCTCAAAATGATTT AACACCAGTATTGCAATTTCAATTTTAGTGTAGAATATTATATGTTAATA TGAAGACTTGGGCTATAATTACTGGAGCAGGAACTGGAATTGGGGCAGCC TTGGTAAAAGAACTTTCAAAATTGAATTCATTTAGTATTCTAGCCTTAGG GAGACGAATTGCTCCTCTAGAAAAGACAAAATCAGAATGCGAAAATAAGG ATCAAGTAACAGTTATATCTGCTGACATCAGCAAAAATGATGATCTCCAA AAAATCAAATCAATAATTTCTCCAGAAGACAATGTCAAATTTTTGGTACA AAATGCAGCTGTCGGTTTACCTGACAAACTGATGGATATCAAAAGAGAAG ATTTCGAATATGCACTTGCAGTCAATGTGACTGCTCCTTTGCTTTTATCT CAAATGTTTTTACCACAGTTATCCAAATGCAAAGGAAGAATCATTCATAT TGGAACAGGAGTTGCTTTCAATCCTCAGGTCGGAACTTCGACTTATGGTA TAACTAAAATGGCTTTCCATCGTTTATATACTCAACTTCAAGTTGAATTG AAAGGCACAGGTGCACAAATTGCCATGGTTCTTCCTGGAGTTGTTGATAC CGAAGGCTTGTGGGATCATTACGATTTAGCCAAAAAACAAGAGTTGCCCC ATACAGCATATTTTGATCAGGTCAAACGAGAAGGGAAAATATTGTCTTCA GAGGCTTCAGCTAAATTCTTAAAATATGTCATGTGTGACACAAGTGAGGA AGACTTCCCCAAAGAATGGAATGCCAATAACGAAAGCCTGTGGTCACTTT GGAAAAATTAAGTCATATGTTTGAAGAAAAAAACAAAAAATTTTTTAATG ACATGTAGGTGGAGCATAGTATTTCCATTTTTTTTTTAATTCTATAGATT AATTTTTGTATATTTTTAGGAAAAAAGGACTATTTCAAATAAAATTGATT ATAAATATTTTGATGGAGAACAAAACTGATTGAATATAGTTTGATTTGTG TTGGGAAAATGTCCATATTAAGATAGACACAAAAAATAGTAAGTACCCAA TCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000861XLOC_000861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001649-exon-sc0000011-1575043694:244010..245514TCONS_00001649-exon-sc0000011-1575043694:244010..245514Clytia hemisphaericaexon
TCONS_00001649-exon-sc0000011-1510915933:244010..245514TCONS_00001649-exon-sc0000011-1510915933:244010..245514Clytia hemisphaericaexon
TCONS_00001649-exon-sc0000011-1491911889:244010..245514TCONS_00001649-exon-sc0000011-1491911889:244010..245514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:244010..245514 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.34322 9.46539 10.4245 13.5965 9.9556 8.69933 4.4257 7.75549 2.70782 3.71647 1.94254 2.46366 1.29394 2.04933 1.51447 1.64725 3.11876 1.95391 0.863928 1.38014 2.65592 2.37818 4.98646 3.03225 4.98718 4.81221 2.62588 2.4001 3.82679 3.40679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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