TCONS_00001648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001648
Unique NameTCONS_00001648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001648 ID=TCONS_00001648|Name=TCONS_00001648|organism=Clytia hemisphaerica|type=transcript|length=577bp
NNAAAAACAGACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGT
TATTTTAGTGACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACA
ATATATTGAACAATACAAAACTGAGGAGGAACGGttaaaagagaaagaga
atgatttagcgAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGAT
AATAAGATACATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGA
acaggaagaagaagaagaagatgaagatgatgatGCTGAGCTACAAAAAT
atATGGAGTGCGACCAAACGAAAGTTTCGGAAGACGAGAAAGAGAGATCT
CGCGAAGAATTTATTTCGCTGATGAAAGAACGTTTCTTATCTGGACAAGA
CAAAGAGTTTTTCGATTATCAGAAAGTCGATTCAAATGAACTTTATGATG
ACATTTATGATCAGGATTTAGAAGACTCTTATTTTGATGACGATTGATGG
TGTATTTTCGAAGTGAAATTTTTCTATTGGAATAATCTTAAAAGCTAAGC
TAATTTTAAAATGTACCAAAAAATTTC
Run BLAST on NCBI

protein sequence of TCONS_00001648-protein

>TCONS_00001648-protein ID=TCONS_00001648-protein|Name=TCONS_00001648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
KNRRYNYLKQKLKNTSYFSDEEMKNRCPFLYQQYIEQYKTEEERLKEKEN
DLAKNSLAQFLLGTIDNKIHQARCKIEEEAMEEQEEEEEDEDDDAELQKY
MECDQTKVSEDEKERSREEFISLMKERFLSGQDKEFFDYQKVDSNELYDD
IYDQDLEDSYFDDD
Run BLAST on NCBI

transcript from alignment at sc0000011:239790..242997-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001648 ID=TCONS_00001648|Name=TCONS_00001648|organism=Clytia hemisphaerica|type=transcript|length=3208bp|location=Sequence derived from alignment at sc0000011:239790..242997- (Clytia hemisphaerica)
NNAAAAACAGACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGT TATTTTAGTGACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACA ATATATTGAACAATACAAAACTGAGGAGGAACGGTTAAAAGAGAAAGAGA ATGATTTAGCGAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGAT AATAAGATACATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGA ACAGGAAGAAGAAGAAGAAGATGAAGATGATGATGCTGAGCTACAAAAAT GTAAGTTTTCTTTATTTTTGTTTCAAACTTGAGACTTCGTAAATGTCAGT CAGATGTATCGCATTTCCTTTTTGGTTGAATACCTTTTTTTGGACCTACC CCGGTGGAGGTCTTATAAATTAACCTTTTGGACCTACCCCGGTGGAGGTC TTATAAATTAACCTTTGTCCGTTCGTTCGTTCGTTATTAGCTTTCATCAT GATTGGCTCATAGTTTTTTCTGATTTTTTGCACAAAGATGCATAACTATA AACCCTCGAATGTGACGGAGCCCGATTTCCGAAAAAAAATGTTTTTGGGC AAATTTGGGCCACAAAACGGCTAAAAAACGGGTTTTTTGGATTTTGTGAA AAATTGGATCATTAATTTTTTCTGATTTTTTGCATAGTAGGGTACCATCA TAGGTAAAAGATGTCTCAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTC AAAAAACGCATGTTTATCTATAAAAATCAATATTAATATACGTCATATTC TAAGTCAAATTACTCATTTTTTTTATGAGATAGATGTTTTTTTTTGCTCG TGAGGGCTTACTTTTAAAGAATATGTGTGTTTAGACATGAAATTTTGGTT GCTTGGCTTGTTTTTATAGAAAAACTGGCCAAATCCGATATTTTTTTATA AGCACATCATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTT CACTCTTTATGATTTTTTGCACAAAGATGCATAACTACCGGGTGCGCCAC AAAAAAGTTTCTCTCTTTGAAACTGATTTGCTTGAAATCTTAAATTTTTA AAAGAACCATGCCTATCCCATTGGAAAGAAGAAAGATAAACTTAAATTTT GATGGGTCATTTATCAAATTCGATTTTTTAGATCGAAAGTTATGCTCGAT TGAATAAAAAAGTTACTTTCAGGAAGTGCCCGAAAACGTTAAAAATCGAG CTATCAAATTTTTAGTTTAAATTTGGCAATCGCATTAGCCTTTACGTGAT CAAGAGCATTTTTCAGTAATTAAACACATAAATTTTGAAACTGATGGGTC GAAAGAGTTTTAAATCTTCATCAAAATCATTTTAATTTATTTTTACCCAA ATTTTCCACAGATTTTTGGTTCTAGACTGGATAAAGTCTATGTAAGGCTG GATGTACCTCGACACCCATATTTGATGTATTTTTATGAATTTTACCAGAT TTTTTGGCTTTTTTCGACGAATTTTCTTCTTTTTAATGTAATTCAACCTT CCTTTATATAACAAAAGGTCGTTTAGACAGCTAATTATCATTTTTGATGA CTGAGGCGAAAAAACTGGTGCATCATGTAATTATGCTTCTGTTTAATTTG ATAGGTCGATTTTTAACGTTTTTGAGCATTTTCCGAAAGTAACTTTTTTA TTCAATTGAGCATAACTTTCGACCTAATGTACCGAATTCATTAAATGACC CATCAAAATTTAAGTTTATCCTTCTTCTTTCCAATGGAGTAGGATAGGAC ATTTGATTCTTTTAAAATTTTTAGATTTCGAGAAAATTAGTTTTAAAGAG AGAAGCTTTTTTGTGGCGCACCCGGTATAAACCCTCGAATGTGACGGAGC TCGATTTTTGGAAAACAACTTTTGAGGTAAATTTCAGCTAAAAACGGCTA AAAAAAAGAGTTTTTTTTTAATTATTGGATCATTGTTTTTTTCTGACTTT TTGCATGAAAGTAGGTTAAAGATGGCTGAAGCAGATTTTTGTAAAAAAAG AATTTTTCAGCTCAAAAAACGCATCTTTATCTTTAAGAATCACTATTAAT AAGCATACATCAATGTTCTTAAAATCACTGAATTTTTTGATGAGATATGT TTTTTGCTCACGAAGTCTTGAATATGAAAGAATATTTCAAGAGCATGAAA TTTTGGTTTCTAAACATTTCCTTATAAGAAAGAAACGATTAATTTTAATA GATCGTCACTATTTGTGTTCTGAATGATTGTTTAATGGTCACGCTCACGT AGATATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAA GTATAACTTGTTATCTTTTTTATCAATTTCTTCATTTCCAATATCAAAAA CGACCGTACATGTGGCTCAAAAAACCCTTACAGTGCAGGGAAACCATTTG TCATTTTAAGGCAAAATATGGTCACACTCACATTTTCCAAGTTTTACACC CTTAGAGTGCACTTTCTCTTATCTTTGCTCATTTCACCCTTACAGTACAC TTTCGGAATCTTGGAAGTAGGACCTTTAAGGGCCACCCGTACTCTTAGGT GCCTAATATACGCCCCATCACCCGCTTGTTAATTTTTTGTTTTTCGAACC CCCTCCCCCACCCGGACCTTATTTGGATCTCCCCGTTTATTAATTCTTTG AAAATATTTTTAGCTGTCTAAAATCATGTTCGCACGTAGTGATTGCGTTT CGCTCTGAAAGGAAATGAAGTTGGTTAAAAGTGACGCAAATCTTGAATTT AACAAATAGAATGGCTTCATTTCCTTTCGGAGCGAAACGGAATTGTTACG TGCGAAACGTACTACGAATAATTTCGGCACCATGGAAGATTATCCTAATT CTTTTACATTTTATTTTACTTTCGTTTTCAGATATGGAGTGCGACCAAAC GAAAGTTTCGGAAGACGAGAAAGAGAGATCTCGCGAAGAATTTATTTCGC TGATGAAAGAACGTTTCTTATCTGGACAAGACAAAGAGTTTTTCGATTAT CAGAAAGTCGATTCAAATGAACTTTATGATGACATTTATGATCAGGATTT AGAAGACTCTTATTTTGATGACGATTGATGGTGTATTTTCGAAGTGAAAT TTTTCTATTGGAATAATCTTAAAAGCTAAGCTAATTTTAAAATGTACCAA AAAATTTC

Coding sequence (CDS) from alignment at sc0000011:239790..242997-

>TCONS_00001648 ID=TCONS_00001648|Name=TCONS_00001648|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000011:239790..242997- (Clytia hemisphaerica)
ATATGGAGTGCGACCAAACGAAAGTTTCGGAAGACGAGAAAGAGAGATCT
CGCGAAGAATTTATTTCGCTGATGAAAGAACGTTTCTTATCTGGACAAGA
CAAAGAGTTTTTCGATTATCAGAAAGTCGATTCAAATGAACTTTATGATG
ACATTTATGATCAGGATTTAGAAGACTCTTATTTTGATGACGATTGAAAA
AACAGACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGTTATTT
TAGTGACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACAATATA
TTGAACAATACAAAACTGAGGAGGAACGGTTAAAAGAGAAAGAGAATGAT
TTAGCGAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGATAATAA
GATACATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGAACAGG
AAGAAGAAGAAGAAGATGAAGATGATGATGCTGAGCTACAAAAATATATG
GAGTGCGACCAAACGAAAGTTTCGGAAGACGAGAAAGAGAGATCTCGCGA
AGAATTTATTTCGCTGATGAAAGAACGTTTCTTATCTGGACAAGACAAAG
AGTTTTTCGATTATCAGAAAGTCGATTCAAATGAACTTTATGATGACATT
TATGATCAGGATTTAGAAGACTCTTATTTTGATGACGATTGAAAAAACAG
ACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGTTATTTTAGTG
ACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACAATATATTGAA
CAATACAAAACTGAGGAGGAACGGTTAAAAGAGAAAGAGAATGATTTAGC
GAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGATAATAAGATAC
ATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGAACAGGAAGAA
GAAGAAGAAGATGAAGATGATGATGCTGAGCTACAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000860XLOC_000860Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001648-proteinTCONS_00001648-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001648-exon-sc0000011-1575043694:242698..242997TCONS_00001648-exon-sc0000011-1575043694:242698..242997Clytia hemisphaericaexon
TCONS_00001648-exon-sc0000011-1575043694:239790..240066TCONS_00001648-exon-sc0000011-1575043694:239790..240066Clytia hemisphaericaexon
TCONS_00001648-exon-sc0000011-1510915933:242698..242997TCONS_00001648-exon-sc0000011-1510915933:242698..242997Clytia hemisphaericaexon
TCONS_00001648-exon-sc0000011-1510915933:239790..240066TCONS_00001648-exon-sc0000011-1510915933:239790..240066Clytia hemisphaericaexon
TCONS_00001648-exon-sc0000011-1491911889:242698..242997TCONS_00001648-exon-sc0000011-1491911889:242698..242997Clytia hemisphaericaexon
TCONS_00001648-exon-sc0000011-1491911889:239790..240066TCONS_00001648-exon-sc0000011-1491911889:239790..240066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:239790..242997 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.8765 34.5964 15.282 16.3393 30.1623 24.5538 26.2766 27.1527 22.991 16.7044 18.2649 13.997 10.2588 11.6526 13.9595 14.8044 22.942 19.5833 8.19861 6.54169 20.7862 17.1859 107.554 82.0042 27.4296 26.6049 14.6734 12.274 54.4651 62.2506
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018613DUF2052_coiled-coil
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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