Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001648 ID=TCONS_00001648|Name=TCONS_00001648|organism=Clytia hemisphaerica|type=transcript|length=577bp
NNAAAAACAGACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGT
TATTTTAGTGACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACA
ATATATTGAACAATACAAAACTGAGGAGGAACGGttaaaagagaaagaga
atgatttagcgAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGAT
AATAAGATACATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGA
acaggaagaagaagaagaagatgaagatgatgatGCTGAGCTACAAAAAT
atATGGAGTGCGACCAAACGAAAGTTTCGGAAGACGAGAAAGAGAGATCT
CGCGAAGAATTTATTTCGCTGATGAAAGAACGTTTCTTATCTGGACAAGA
CAAAGAGTTTTTCGATTATCAGAAAGTCGATTCAAATGAACTTTATGATG
ACATTTATGATCAGGATTTAGAAGACTCTTATTTTGATGACGATTGATGG
TGTATTTTCGAAGTGAAATTTTTCTATTGGAATAATCTTAAAAGCTAAGC
TAATTTTAAAATGTACCAAAAAATTTC Run BLAST on NCBI protein sequence of TCONS_00001648-protein >TCONS_00001648-protein ID=TCONS_00001648-protein|Name=TCONS_00001648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
KNRRYNYLKQKLKNTSYFSDEEMKNRCPFLYQQYIEQYKTEEERLKEKEN
DLAKNSLAQFLLGTIDNKIHQARCKIEEEAMEEQEEEEEDEDDDAELQKY
MECDQTKVSEDEKERSREEFISLMKERFLSGQDKEFFDYQKVDSNELYDD
IYDQDLEDSYFDDD Run BLAST on NCBI transcript from alignment at sc0000011:239790..242997- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001648 ID=TCONS_00001648|Name=TCONS_00001648|organism=Clytia hemisphaerica|type=transcript|length=3208bp|location=Sequence derived from alignment at sc0000011:239790..242997- (Clytia hemisphaerica)
NNAAAAACAGACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGT
TATTTTAGTGACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACA
ATATATTGAACAATACAAAACTGAGGAGGAACGGTTAAAAGAGAAAGAGA
ATGATTTAGCGAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGAT
AATAAGATACATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGA
ACAGGAAGAAGAAGAAGAAGATGAAGATGATGATGCTGAGCTACAAAAAT
GTAAGTTTTCTTTATTTTTGTTTCAAACTTGAGACTTCGTAAATGTCAGT
CAGATGTATCGCATTTCCTTTTTGGTTGAATACCTTTTTTTGGACCTACC
CCGGTGGAGGTCTTATAAATTAACCTTTTGGACCTACCCCGGTGGAGGTC
TTATAAATTAACCTTTGTCCGTTCGTTCGTTCGTTATTAGCTTTCATCAT
GATTGGCTCATAGTTTTTTCTGATTTTTTGCACAAAGATGCATAACTATA
AACCCTCGAATGTGACGGAGCCCGATTTCCGAAAAAAAATGTTTTTGGGC
AAATTTGGGCCACAAAACGGCTAAAAAACGGGTTTTTTGGATTTTGTGAA
AAATTGGATCATTAATTTTTTCTGATTTTTTGCATAGTAGGGTACCATCA
TAGGTAAAAGATGTCTCAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTC
AAAAAACGCATGTTTATCTATAAAAATCAATATTAATATACGTCATATTC
TAAGTCAAATTACTCATTTTTTTTATGAGATAGATGTTTTTTTTTGCTCG
TGAGGGCTTACTTTTAAAGAATATGTGTGTTTAGACATGAAATTTTGGTT
GCTTGGCTTGTTTTTATAGAAAAACTGGCCAAATCCGATATTTTTTTATA
AGCACATCATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTT
CACTCTTTATGATTTTTTGCACAAAGATGCATAACTACCGGGTGCGCCAC
AAAAAAGTTTCTCTCTTTGAAACTGATTTGCTTGAAATCTTAAATTTTTA
AAAGAACCATGCCTATCCCATTGGAAAGAAGAAAGATAAACTTAAATTTT
GATGGGTCATTTATCAAATTCGATTTTTTAGATCGAAAGTTATGCTCGAT
TGAATAAAAAAGTTACTTTCAGGAAGTGCCCGAAAACGTTAAAAATCGAG
CTATCAAATTTTTAGTTTAAATTTGGCAATCGCATTAGCCTTTACGTGAT
CAAGAGCATTTTTCAGTAATTAAACACATAAATTTTGAAACTGATGGGTC
GAAAGAGTTTTAAATCTTCATCAAAATCATTTTAATTTATTTTTACCCAA
ATTTTCCACAGATTTTTGGTTCTAGACTGGATAAAGTCTATGTAAGGCTG
GATGTACCTCGACACCCATATTTGATGTATTTTTATGAATTTTACCAGAT
TTTTTGGCTTTTTTCGACGAATTTTCTTCTTTTTAATGTAATTCAACCTT
CCTTTATATAACAAAAGGTCGTTTAGACAGCTAATTATCATTTTTGATGA
CTGAGGCGAAAAAACTGGTGCATCATGTAATTATGCTTCTGTTTAATTTG
ATAGGTCGATTTTTAACGTTTTTGAGCATTTTCCGAAAGTAACTTTTTTA
TTCAATTGAGCATAACTTTCGACCTAATGTACCGAATTCATTAAATGACC
CATCAAAATTTAAGTTTATCCTTCTTCTTTCCAATGGAGTAGGATAGGAC
ATTTGATTCTTTTAAAATTTTTAGATTTCGAGAAAATTAGTTTTAAAGAG
AGAAGCTTTTTTGTGGCGCACCCGGTATAAACCCTCGAATGTGACGGAGC
TCGATTTTTGGAAAACAACTTTTGAGGTAAATTTCAGCTAAAAACGGCTA
AAAAAAAGAGTTTTTTTTTAATTATTGGATCATTGTTTTTTTCTGACTTT
TTGCATGAAAGTAGGTTAAAGATGGCTGAAGCAGATTTTTGTAAAAAAAG
AATTTTTCAGCTCAAAAAACGCATCTTTATCTTTAAGAATCACTATTAAT
AAGCATACATCAATGTTCTTAAAATCACTGAATTTTTTGATGAGATATGT
TTTTTGCTCACGAAGTCTTGAATATGAAAGAATATTTCAAGAGCATGAAA
TTTTGGTTTCTAAACATTTCCTTATAAGAAAGAAACGATTAATTTTAATA
GATCGTCACTATTTGTGTTCTGAATGATTGTTTAATGGTCACGCTCACGT
AGATATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAA
GTATAACTTGTTATCTTTTTTATCAATTTCTTCATTTCCAATATCAAAAA
CGACCGTACATGTGGCTCAAAAAACCCTTACAGTGCAGGGAAACCATTTG
TCATTTTAAGGCAAAATATGGTCACACTCACATTTTCCAAGTTTTACACC
CTTAGAGTGCACTTTCTCTTATCTTTGCTCATTTCACCCTTACAGTACAC
TTTCGGAATCTTGGAAGTAGGACCTTTAAGGGCCACCCGTACTCTTAGGT
GCCTAATATACGCCCCATCACCCGCTTGTTAATTTTTTGTTTTTCGAACC
CCCTCCCCCACCCGGACCTTATTTGGATCTCCCCGTTTATTAATTCTTTG
AAAATATTTTTAGCTGTCTAAAATCATGTTCGCACGTAGTGATTGCGTTT
CGCTCTGAAAGGAAATGAAGTTGGTTAAAAGTGACGCAAATCTTGAATTT
AACAAATAGAATGGCTTCATTTCCTTTCGGAGCGAAACGGAATTGTTACG
TGCGAAACGTACTACGAATAATTTCGGCACCATGGAAGATTATCCTAATT
CTTTTACATTTTATTTTACTTTCGTTTTCAGATATGGAGTGCGACCAAAC
GAAAGTTTCGGAAGACGAGAAAGAGAGATCTCGCGAAGAATTTATTTCGC
TGATGAAAGAACGTTTCTTATCTGGACAAGACAAAGAGTTTTTCGATTAT
CAGAAAGTCGATTCAAATGAACTTTATGATGACATTTATGATCAGGATTT
AGAAGACTCTTATTTTGATGACGATTGATGGTGTATTTTCGAAGTGAAAT
TTTTCTATTGGAATAATCTTAAAAGCTAAGCTAATTTTAAAATGTACCAA
AAAATTTC Coding sequence (CDS) from alignment at sc0000011:239790..242997- >TCONS_00001648 ID=TCONS_00001648|Name=TCONS_00001648|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000011:239790..242997- (Clytia hemisphaerica)
ATATGGAGTGCGACCAAACGAAAGTTTCGGAAGACGAGAAAGAGAGATCT
CGCGAAGAATTTATTTCGCTGATGAAAGAACGTTTCTTATCTGGACAAGA
CAAAGAGTTTTTCGATTATCAGAAAGTCGATTCAAATGAACTTTATGATG
ACATTTATGATCAGGATTTAGAAGACTCTTATTTTGATGACGATTGAAAA
AACAGACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGTTATTT
TAGTGACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACAATATA
TTGAACAATACAAAACTGAGGAGGAACGGTTAAAAGAGAAAGAGAATGAT
TTAGCGAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGATAATAA
GATACATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGAACAGG
AAGAAGAAGAAGAAGATGAAGATGATGATGCTGAGCTACAAAAATATATG
GAGTGCGACCAAACGAAAGTTTCGGAAGACGAGAAAGAGAGATCTCGCGA
AGAATTTATTTCGCTGATGAAAGAACGTTTCTTATCTGGACAAGACAAAG
AGTTTTTCGATTATCAGAAAGTCGATTCAAATGAACTTTATGATGACATT
TATGATCAGGATTTAGAAGACTCTTATTTTGATGACGATTGAAAAAACAG
ACGTTATAATTATTTGAAACAGAAATTGAAAAACACAAGTTATTTTAGTG
ACGAAGAAATGAAGAATAGATGTCCATTTTTATATCAACAATATATTGAA
CAATACAAAACTGAGGAGGAACGGTTAAAAGAGAAAGAGAATGATTTAGC
GAAGAATAGTTTGGCGCAATTCTTGTTGGGTACTATCGATAATAAGATAC
ATCAAGCACGTTGTAAGATTGAGGAAGAAGCGATGGAGGAACAGGAAGAA
GAAGAAGAAGATGAAGATGATGATGCTGAGCTACAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001648-exon-sc0000011-1575043694:242698..242997 | TCONS_00001648-exon-sc0000011-1575043694:242698..242997 | Clytia hemisphaerica | exon |
| TCONS_00001648-exon-sc0000011-1575043694:239790..240066 | TCONS_00001648-exon-sc0000011-1575043694:239790..240066 | Clytia hemisphaerica | exon |
| TCONS_00001648-exon-sc0000011-1510915933:242698..242997 | TCONS_00001648-exon-sc0000011-1510915933:242698..242997 | Clytia hemisphaerica | exon |
| TCONS_00001648-exon-sc0000011-1510915933:239790..240066 | TCONS_00001648-exon-sc0000011-1510915933:239790..240066 | Clytia hemisphaerica | exon |
| TCONS_00001648-exon-sc0000011-1491911889:242698..242997 | TCONS_00001648-exon-sc0000011-1491911889:242698..242997 | Clytia hemisphaerica | exon |
| TCONS_00001648-exon-sc0000011-1491911889:239790..240066 | TCONS_00001648-exon-sc0000011-1491911889:239790..240066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:239790..242997 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018613 | DUF2052_coiled-coil |
Blast
The following BLAST results are available for this feature:
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