TCONS_00001645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001645
Unique NameTCONS_00001645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001645 ID=TCONS_00001645|Name=TCONS_00001645|organism=Clytia hemisphaerica|type=transcript|length=1512bp
TATAAATACAGCCCTGATAATAAAATGAGACTTAACGAGCTGATGAGACA
AAATGATTTAACTTGGGGACAGATCGAAGaACTATTCACATGCTTTCAAG
AATTTGACATTTTCGGTCGTGGGGTCATTGATGCATTTTCAATCAAACAT
GTATCGAGTTTTACTGGACGTGAAATTTCCGAAGACGAAGCCCAAGAAAT
CATTGCAACTATGGTCGAGCCTCAAGATGAAAATAATTCCACCAATGTAC
CTATTGGAAACCCAACTACAAAGCCAGTCGGTGTGTTAGATTTCATTGAT
TTCGTTCGTGCAATGTCGGGCGTTACCAAGGAACCACTGGATGAATGGGA
TTTGAAACAAGTGTTCAAAGTATTTGATGTGGATGATGATTCGTTTATTT
CACCACCAGAAATGCATCGAGCTTTCTTAACGCTTGGTATCGATTTGACT
CGATTGGAAATTAATGATATTTTTCGAGAATTTGATCAAGATGATGATGG
CCTGATTTCTTTTGAAGAATTTGAATTCCTCATTGAAGGAGCGCACAATC
AAATCACAAGAGAAGAACgtaagaaaattgaagaatttgaaCGTGAACAA
CTGCAAAGAGAAGAAGAAGTAAGAAAAagggaagaagaagaagaacaagC
TATTCAAATGAGAATTTCTCAAAGTGCTGATGctgatccagaaatgacca
gtGTCTTTGGTGGGCAAATGTGACtgataaacgttttttttataagaaca
tccaaaaattttgaagccttaaaatgttcttaacgtgttcttgCTTTCAC
cattttgcccatttttctaagaaaccggtttttttagagtcggcaaagcc
ttaaaaagttcttaaattgtccttaacatttcggccatcgttcttaaaaa
gattttttttaaacgtGTAAAACGAAAACTCGCATctccgtgtatcccag
gctttatcaACGCTACTGACGGACGCCAGAGAAGACAGGTTATCAATAAG
CATGAAAGAGCCGATACTGTAATACGCAAGGAATTGGTTgaaatgttaaa
atattataCAACGTACAATTATTTTTAACCATGAGTATATAATTTAATGG
CATAAAAAATAACGTTATATTTGAAACATTTTATTACAACTTGATGTAGT
AGCTCTTGATCCACGGGGGAGGGTACTTTTGgtaaaaattgggtacgggg
acgtgccgctggttaGGGTCCCTTTTTatgctctgaagatatctgacagg
gtcgactttgggttattttggatatttttcaGGTCGGTAATTATaaagtt
ttccaatttttcgtctacttttagtcatttttaacACTTTTCAGGATGAA
gatggggaaaattttcaattttttcgttcTGAAacggtcccaaatttacc
aaactgCCAGCGGCACATCCCTGTTGGTCGTCAAAGTCAGTGCCCCCAGA
TTCTTGACAATCTTGGAAGTTTGGCGTATTcttttgttcttaaaatgttc
ttgatttCACCA
Run BLAST on NCBI

transcript from alignment at sc0000011:205190..208466-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001645 ID=TCONS_00001645|Name=TCONS_00001645|organism=Clytia hemisphaerica|type=transcript|length=3277bp|location=Sequence derived from alignment at sc0000011:205190..208466- (Clytia hemisphaerica)
TATAAATACAGCCCTGATAATAAAATGAGACTTAACGAGGTTAGATTTTT
TCATTTATGCCAAAATAACTTCTTTCTTGTGAATTCCCATCGATAAATCG
TCGTTAACATGATTGACTTAAAGTTTAATCTAAAAATCAGTACCTTACAA
AATCAATAGTTATACACATTTTTTTTATAAGCAACCCCAATTTTCGACTC
AGGGCCGAAGTTGCAATTTCTCTTCGTAACCTATCTCTTAAATTTTCTTA
TAAATCTACTACTTTTAAATTAGCTGATGAGACAAAATGATTTAACTTGG
GGACAGATCGAAGGTGAGAATTTTTTAATTAATTTTCATATGATTTTCCT
TCGAAAATACACAACAATTTTACTTCATAAATAGACTTGCAATTTTCCTT
CAAAAATACATAACAATTTTACTTCATAAATAGACTGCAATTTTCCTTCA
AAAATACAGAATAATTTTACAAATAAGGAGCAGTTGAAAGATACATAGCA
GATACTTTATAAAAACCCTACAATTCTCCTTCAAAAACAAAATACACAAC
ACAATTGCTGTAAATTAGATAGATTGTGTATTTCTTTTCTTCTTTAGAAC
TATTCACATGCTTTCAAGAATTTGACATTTTCGGTCGTGGGGTCATTGAT
GCATTTTCAATCAAACATGTATCGAGTTTTACTGGACGTGAAATTTCCGA
AGACGAAGCCCAAGAAATCATTGCAACTATGGTCGAGCCTCAAGGTAGAC
CCAGCTGGCACACAACCTTGTTTCAACATTCATATAACGTTATATGGACG
TTGTGAACGTTAGATAAACGTTTAAATATCGTTGTGTGCCAACTGGGAGA
GCAAGATTACAATCTAACCCTGTCTGAATTGCCCGATTAGAACCTTTCAA
CCAATATAGGGGTGGAATGAAGGAGCTAAAGTCCATTCGCTTTAAGTATA
CACTAATTCTTGTTTTGCATGCTATCTTTCAATCAATGATTCAATCCTAT
CGAATCATATACCGCTGAACAACAAAATAGTGTACACTTAAAGCGAATGG
ATTTTATTAGACTGTTTTGATGGGCTTGTATTTGCCCTTTGTAAAGAACT
CCAAAATCCAGTGGATATTCTAGAAATTAATGGGTGGGAATGATATTTCA
GTGTATCTTGCTCTTTGGCTTAAGTTTTGGGGTAATGGCTTTGGCAAGAG
ACTGAATGGAGCATACGTAGACTTTCTAATGAATCGCTTAAGAATAGAAT
CTACATCTCTGAAGAGGATAGCTATACAGGAGATACATGAATAAAGGAGG
AAAAAAAGATCCATTTTTCTTTTATTGATATGCAATAATACAAAACACGC
ATAATATCTCTGCAACGACATGCTTTGATCTTCTACCCTGTATAATCTTC
ATTCTCTAATTCGAGTTTAAGACTCCCCGTAATCCGAATAATTTAACTCG
GAGTAAAGTTAATGCAATTTACATTACTGTCTAGATGAAAATAATTCCAC
CAATGTACCTATTGGAAACCCAACTACAAAGCCAGTCGGTGTGTTAGATT
TCATTGATTTCGTTCGTGCAATGTCGGGCGTTACCAAGGAACCACTGGAT
GAATGGGATTTGAAACAAGTGTTCAAAGTATTTGATGTGGATGATGATTC
GTTTATTTCACCACCAGAAATGCATCGAGCTTTCTTAACGCTTGGTATCG
ATTTGACTCGATTGGAAATTAATGATATTTTTCGAGAATTTGATCAAGAT
GATGATGGCCTGATTTCTTTTGAAGGTACGTGTGGACTAAAGAACAAACA
TTTTTTTTCGAAGTCTAAGATATTGCTAAAATGATTTTAGTGGCTATATT
TTAGGTTTTATTTTAGGTGTACAGTGCCTTGTTTGCGATAATTACATTTT
TAATAGTAGTTGGCATACAATTCACGACTTAAGATGATCAAAAGCCTTTC
TGAGAAATAACAATCCTGTCTCAGTTTTAGAGATTTTGAGAAATAGCCAA
TCTCCCCAGGCTAGGTATTATCATAGACTAGGAAGTAAAACGTGTGCTTG
CCCATCTACATACACGATTTTATGTGTAAAGTCCCTCTTAAATGTGCAGT
CTGGCACGTGTACTTTCCACCTCATACGTCATAGTCCATCGGTTCACAAT
AAGCCTCGTTGAGTCTCATTGGATTGAATATTGGATGGTTAGAGGTTAAC
ACGATTTTTGCAATAATTTTGTAGTTAATGATCAATTATTCTGATTATGT
TTATCAACTATGATTAACTTTCCCATTCATAGAATTTGAATTCCTCATTG
AAGGAGCGCACAATCAAATCACAAGAGAAGAACGTAAGAAAATTGAAGAA
TTTGAACGTGAACAACTGCAAAGAGAAGAAGAAGTAAGAAAAAGGGAAGA
AGAAGAAGAACAAGCTATTCAAATGAGAATTTCTCAAAGTGCTGATGCTG
ATCCAGAAATGACCAGTGTCTTTGGTGGGCAAATGTGACTGATAAACGTT
TTTTTTATAAGAACATCCAAAAATTTTGAAGCCTTAAAATGTTCTTAACG
TGTTCTTGCTTTCACCATTTTGCCCATTTTTCTAAGAAACCGGTTTTTTT
AGAGTCGGCAAAGCCTTAAAAAGTTCTTAAATTGTCCTTAACATTTCGGC
CATCGTTCTTAAAAAGATTTTTTTTAAACGTGTAAAACGAAAACTCGCAT
CTCCGTGTATCCCAGGCTTTATCAACGCTACTGACGGACGCCAGAGAAGA
CAGGTTATCAATAAGCATGAAAGAGCCGATACTGTAATACGCAAGGAATT
GGTTGAAATGTTAAAATATTATACAACGTACAATTATTTTTAACCATGAG
TATATAATTTAATGGCATAAAAAATAACGTTATATTTGAAACATTTTATT
ACAACTTGATGTAGTAGCTCTTGATCCACGGGGGAGGGTACTTTTGGTAA
AAATTGGGTACGGGGACGTGCCGCTGGTTAGGGTCCCTTTTTATGCTCTG
AAGATATCTGACAGGGTCGACTTTGGGTTATTTTGGATATTTTTCAGGTC
GGTAATTATAAAGTTTTCCAATTTTTCGTCTACTTTTAGTCATTTTTAAC
ACTTTTCAGGATGAAGATGGGGAAAATTTTCAATTTTTTCGTTCTGAAAC
GGTCCCAAATTTACCAAACTGCCAGCGGCACATCCCTGTTGGTCGTCAAA
GTCAGTGCCCCCAGATTCTTGACAATCTTGGAAGTTTGGCGTATTCTTTT
GTTCTTAAAATGTTCTTGATTTCACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000858XLOC_000858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001645-exon-sc0000011-1575043694:208428..208466TCONS_00001645-exon-sc0000011-1575043694:208428..208466Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1575043694:208154..208193TCONS_00001645-exon-sc0000011-1575043694:208154..208193Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1575043694:207723..207869TCONS_00001645-exon-sc0000011-1575043694:207723..207869Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1575043694:206692..206982TCONS_00001645-exon-sc0000011-1575043694:206692..206982Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1575043694:205190..206184TCONS_00001645-exon-sc0000011-1575043694:205190..206184Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1510915933:208428..208466TCONS_00001645-exon-sc0000011-1510915933:208428..208466Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1510915933:208154..208193TCONS_00001645-exon-sc0000011-1510915933:208154..208193Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1510915933:207723..207869TCONS_00001645-exon-sc0000011-1510915933:207723..207869Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1510915933:206692..206982TCONS_00001645-exon-sc0000011-1510915933:206692..206982Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1510915933:205190..206184TCONS_00001645-exon-sc0000011-1510915933:205190..206184Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1491911889:208428..208466TCONS_00001645-exon-sc0000011-1491911889:208428..208466Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1491911889:208154..208193TCONS_00001645-exon-sc0000011-1491911889:208154..208193Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1491911889:207723..207869TCONS_00001645-exon-sc0000011-1491911889:207723..207869Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1491911889:206692..206982TCONS_00001645-exon-sc0000011-1491911889:206692..206982Clytia hemisphaericaexon
TCONS_00001645-exon-sc0000011-1491911889:205190..206184TCONS_00001645-exon-sc0000011-1491911889:205190..206184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:205190..208466 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.195436	0.0609559	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.194892	0.122176	0	0	0	0	0	0	0	0.0684952	0.0788208	0.0250254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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