TCONS_00001639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001639
Unique NameTCONS_00001639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001639 ID=TCONS_00001639|Name=TCONS_00001639|organism=Clytia hemisphaerica|type=transcript|length=1334bp
aaaaaatttaatgcttcattctgttttcttttagtttaaaaataaacatt
tacaataaaattttcaaaatatgagtTTACCAGGAGGGTCTGCCACAGCT
ACCATGTCGGCACAAATGGCTCAAGCGAGtttagaaaaagattttgattt
cccaCAGTTAGTTTTTGATATGATATCTGCTGTAGAATCAAGCAAAGAGC
CTAAAGATGAACTTCTGAAAAAGGTTGTTTTgttcaaacagaaaatgaaT
CAATGCAAAGAACTTCTAAAGAAGATGCCAGGCCTTGACCAAAGTCCAGA
AGAACAACTGAGAAGCTTGAAACAATATCAAGAAGAActagaaaagaaaa
aGGAGGCGCTTGAAAAGCTGAAATATTTGGATGTTTTCACATCGGCTGCT
GTCAAAAAAGAACCTTGAGAATCAAAGTCTTTATATTACAGTATTATGTT
CCACTCAAGGATTTCATCAAATTGTGAAATTTCCGGTATGGCAATGTAAT
TCCAGTAAAGAGCTTATTTGATGGTGTGTGCATTCACTATTGAATACTGG
ATAACAAGAACAATAAAttggttttcaactttgaaTACCATCCATTGAAA
ACTCAGTCGGATTAGAGTTATTGaaataattcgaaaaaatatGGCATACC
ATGTTGTGAGGAATGTTGTGAGCTTGAGCTAAATAGTTGTACCTTGAAGG
GAATAATTTTAGCGTGAACTAGAGTTGTTAGAATGCATCAAAAATATGTG
TTTATGATGGTTTTAAGGAATGTTAACTAGAGCTAAATAGTTTTAATATT
CTTTATTTATGTAACAACGAACTTATAGAACATCCTTTGGGACTTCAAAT
GATAACTAGAAAGCTTTCATAGGTGGACAATTAGGTAAAGGTGTTTTATA
TACCATTTTTGTTCATGGGCCCATCGAAACAATCGCAAAAATTTCTGTTT
TTGTAATTCCAAGTTAGGAATCTgtgatagaaaaaaattcataaactCAA
ACCTATGTATTTTTAACATCTAATAATGCACTTTTTTGGGGTTAaatctt
ttttggacctaccccggtggggtagaggtcctataaattaaccgatgtcc
gtccgttcgtccgttcgtccgtccgtctgttaccagcttttctcaggatt
ggctcattagtttttttttatttttggcccaatgatgcaaaatggtaatg
cccaaaatgtgacggagcccgatttccgaaaaaaatttatttccggccga
aaatgccggaaatatgccggaaaaaccggttttctggcattttctcaaga
tttcatcattagttttttctgcttttttgcacaa
Run BLAST on NCBI

protein sequence of TCONS_00001639-protein

>TCONS_00001639-protein ID=TCONS_00001639-protein|Name=TCONS_00001639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MSLPGGSATATMSAQMAQASLEKDFDFPQLVFDMISAVESSKEPKDELLK
KVVLFKQKMNQCKELLKKMPGLDQSPEEQLRSLKQYQEELEKKKEALEKL
KYLDVFTSAAVKKEP
Run BLAST on NCBI

transcript from alignment at sc0000011:96306..98952-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001639 ID=TCONS_00001639|Name=TCONS_00001639|organism=Clytia hemisphaerica|type=transcript|length=2647bp|location=Sequence derived from alignment at sc0000011:96306..98952- (Clytia hemisphaerica)
AAAAAATTTAATGCTTCATTCTGTTTTCTTTTAGTTTAAAAATAAACATT
TACAATAAAATTTTCAAAATATGAGTTTACCAGGAGGGTCTGCCACAGCT
ACCATGTCGGCACAAATGGCTCAAGCGAGTTTAGAAAAAGATTTTGATTT
CCCACAGTTAGTTTTTGATATGATATCTGCTGTAGAATCAAGCAAAGAGC
CTAAAGATGAACTTCTGAAAAAGGTTAGCAAATGGTTAAAGGGATGATCA
GATTGTTTAAAGATATTTTTGTCTACAGTAACTATTTTTCGAAGTCAAGA
TGTCACAAATTGAAATTTTTAAAAATGGATTACTACACGGTTCTTACGTT
GAAATTTTATTATTTATTATTGAAAATCAAAAGCTTGTAACTTTACTCAA
ATATCTCGACTTTGGAAAATAGTAATGCATAAAAAATATTTTGAGGTTTT
GCTTAGGACAATAGAAGAAATTCAAATGTCAATTATCTCAAACCATCTGA
ATATCCCTTTAATTCATGGAATAAATTTATCATAATTTTGAAGTGCTTAT
TCTTTTTGAATACATGTTAAGGTTTTTTTGAAGGTGTTTCCTGGCATGTA
CCCTACCAGTCACCAGTAAGAACTTAACAATGGGCTTTTCCAGAAAAAAA
TTGAAAATGGGGGGTGGAGGATGTAACATTTTTTAGAAATTTACCCCCAT
ACAATAGGTCTGACCCCCCGGACAAGCATCAGTTGACCCCCTGGACATTC
AAAATAACCCTCAAACCGAGCAAAATTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCCCCCCCCCCACCA
TGTACGGATATTTTCTGGAAGAGAGCCCAATTTAGAATCCATATTCAAAA
AAACCTTCTTCCAATCTTTATTATCATTCAGGTTGTTTTGTTCAAACAGA
AAATGAATCAATGCAAAGAACTTCTAAAGAAGATGCCAGGCCTTGACCAA
AGTCCAGAAGAACAACTGAGAAGCTTGAAACAATATCAAGAAGAACTAGA
AAAGAAAAAGTAATTCTACTTCAATATCTTTCTTTCAGAACCAATCTAAA
ATAGTATTAGGGTTTGATGCAAAAATCGGCGTTTTAAAGAAAAAAATTAC
CAGTTGAGCATTATAAAATAAAAAAGATTAAGAAAATTTCTAATAGCTTA
TAACATTTCTTAACATGGCGATTCACTCAGTGATTATTGGGTAGTAATAA
TAAAATTCTAGATGTAACGCAAGGAGAAAACAAAAGTTTAACATTTCGGC
TTTGATTTTTTTAGGGAGGCGCTTGAAAAGCTGAAATATTTGGATGTTTT
CACATCGGCTGCTGTCAAAAAAGAACCTTGAGAATCAAAGTCTTTATATT
ACAGTATTATGTTCCACTCAAGGATTTCATCAAATTGTGAAATTTCCGGT
ATGGCAATGTAATTCCAGTAAAGAGCTTATTTGATGGTGTGTGCATTCAC
TATTGAATACTGGATAACAAGAACAATAAATTGGTTTTCAACTTTGAATA
CCATCCATTGAAAACTCAGTCGGATTAGAGTTATTGAAATAATTCGAAAA
AATATGGCATACCATGTTGTGAGGAATGTTGTGAGCTTGAGCTAAATAGT
TGTACCTTGAAGGGAATAATTTTAGCGTGAACTAGAGTTGTTAGAATGCA
TCAAAAATATGTGTTTATGATGGTTTTAAGGAATGTTAACTAGAGCTAAA
TAGTTTTAATATTCTTTATTTATGTAACAACGAACTTATAGAACATCCTT
TGGGACTTCAAATGATAACTAGAAAGCTTTCATAGGTGGACAATTAGGTA
AAGGTGTTTTATATACCATTTTTGTTCATGGGCCCATCGAAACAATCGCA
AAAATTTCTGTTTTTGTAATTCCAAGTTAGGAATCTGTGATAGAAAAAAA
TTCATAAACTCAAACCTATGTATTTTTAACATCTAATAATGCACTTTTTT
GGGGTTAAATCTTTTTTGGACCTACCCCGGTGGGGTAGAGGTCCTATAAA
TTAACCGATGTCCGTCCGTTCGTCCGTTCGTCCGTCCGTCTGTTACCAGC
TTTTCTCAGGATTGGCTCATTAGTTTTTTTTTATTTTTGGCCCAATGATG
CAAAATGGTAATGCCCAAAATGTGACGGAGCCCGATTTCCGAAAAAAATT
TATTTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGGTTTTCTGG
CATTTTCTCAAGATTTCATCATTAGTTTTTTCTGCTTTTTTGCACAA

Coding sequence (CDS) from alignment at sc0000011:96306..98952-

>TCONS_00001639 ID=TCONS_00001639|Name=TCONS_00001639|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000011:96306..98952- (Clytia hemisphaerica)
GGAGGCGCTTGAAAAGCTGAAATATTTGGATGTTTTCACATCGGCTGCTG
TCAAAAAAGAACCTTGAGTTGTTTTGTTCAAACAGAAAATGAATCAATGC
AAAGAACTTCTAAAGAAGATGCCAGGCCTTGACCAAAGTCCAGAAGAACA
ACTGAGAAGCTTGAAACAATATCAAGAAGAACTAGAAAAGAAAAAATGAG
TTTACCAGGAGGGTCTGCCACAGCTACCATGTCGGCACAAATGGCTCAAG
CGAGTTTAGAAAAAGATTTTGATTTCCCACAGTTAGTTTTTGATATGATA
TCTGCTGTAGAATCAAGCAAAGAGCCTAAAGATGAACTTCTGAAAAAGGG
AGGCGCTTGAAAAGCTGAAATATTTGGATGTTTTCACATCGGCTGCTGTC
AAAAAAGAACCTTGAGTTGTTTTGTTCAAACAGAAAATGAATCAATGCAA
AGAACTTCTAAAGAAGATGCCAGGCCTTGACCAAAGTCCAGAAGAACAAC
TGAGAAGCTTGAAACAATATCAAGAAGAACTAGAAAAGAAAAAATGAGTT
TACCAGGAGGGTCTGCCACAGCTACCATGTCGGCACAAATGGCTCAAGCG
AGTTTAGAAAAAGATTTTGATTTCCCACAGTTAGTTTTTGATATGATATC
TGCTGTAGAATCAAGCAAAGAGCCTAAAGATGAACTTCTGAAAAAGGGAG
GCGCTTGAAAAGCTGAAATATTTGGATGTTTTCACATCGGCTGCTGTCAA
AAAAGAACCTTGAGTTGTTTTGTTCAAACAGAAAATGAATCAATGCAAAG
AACTTCTAAAGAAGATGCCAGGCCTTGACCAAAGTCCAGAAGAACAACTG
AGAAGCTTGAAACAATATCAAGAAGAACTAGAAAAGAAAAAATGAGTTTA
CCAGGAGGGTCTGCCACAGCTACCATGTCGGCACAAATGGCTCAAGCGAG
TTTAGAAAAAGATTTTGATTTCCCACAGTTAGTTTTTGATATGATATCTG
CTGTAGAATCAAGCAAAGAGCCTAAAGATGAACTTCTGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000853XLOC_000853Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001639-proteinTCONS_00001639-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001639-exon-sc0000011-1575043694:98730..98952TCONS_00001639-exon-sc0000011-1575043694:98730..98952Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1575043694:97544..97671TCONS_00001639-exon-sc0000011-1575043694:97544..97671Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1575043694:96306..97288TCONS_00001639-exon-sc0000011-1575043694:96306..97288Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1510915933:98730..98952TCONS_00001639-exon-sc0000011-1510915933:98730..98952Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1510915933:97544..97671TCONS_00001639-exon-sc0000011-1510915933:97544..97671Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1510915933:96306..97288TCONS_00001639-exon-sc0000011-1510915933:96306..97288Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1491911889:98730..98952TCONS_00001639-exon-sc0000011-1491911889:98730..98952Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1491911889:97544..97671TCONS_00001639-exon-sc0000011-1491911889:97544..97671Clytia hemisphaericaexon
TCONS_00001639-exon-sc0000011-1491911889:96306..97288TCONS_00001639-exon-sc0000011-1491911889:96306..97288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:96306..98952 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.0371	26.2334	16.1332	16.6897	9.28659	6.40003	10.4369	11.348	8.46324	6.98544	8.69919	6.04487	5.83549	5.58743	7.26883	8.72816	9.6914	10.9078	3.64365	4.07581	8.95888	8.05195	28.9942	27.9199	5.76633	11.7077	9.4285	8.58298	13.0076	17.1072
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011425Med9
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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