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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001622 ID=TCONS_00001622|Name=TCONS_00001622|organism=Clytia hemisphaerica|type=transcript|length=1941bp
TGACATAAAGTTTTCTTTGTCTGTGGAGCTGATAGCAGACTTGAATTTTT
tacagcaatattttttttgttaataatgGAAGAAACTCAACGCAAAAGAA
GAAATGATTCTGCCACAGAAAGTAATGAAGCTTATGAGAAGAAACAGAGG
GTGGAACAATTAATTGGTGCTTTGTCAAAACCAGCAAAGAAACTTTCAAG
TAGTTCGTCTATAGATTCGATTGATACTAAACTTTGTATTGagCAACCAG
ATGACGAGGAAGAAAATGTTGACGTTGTCACGTCTAGTCCGCCATCTCCC
GTTCTTATGACGTCATCGCAAAATCATGACATCATCAAACCAGAATCAAC
GGACGCACCACTGTCACCAATGAAATTAAAGCCTGAGTCAGCAGAAAAAT
TATCAACATCCAGCCCTACCGCTTCTTCAACCAACACTAAACCTATTGCC
AAAGTTGTTCATTTTTCACCGAAAATCATACAAGTCGAGAAGCCAGTATT
CACAGATAAACCATCTGCAAGGAGCACTCGCGCAGCAGCTAAAAATGCTG
CAAAGAAAAGTATGTTCAGTCCGCCCATTCCACCCGTCTCAACCGCCAAC
ATTTACAAAGAAGCGCCACGGCAACTCACACGAGTACCACGTGATACAAA
TATTCCTCTTATTGTTTACAATCCACCTAAATCAAAAACAACATCAAGCC
TCGCATCATCGGCCCCTTCCGTAATCCCGATTGTTCCGATTACCACAGCG
CCCGGTAATGTTATCCTTCAAGCATCAATCTATCATGCAGGAAACCCACA
TCAGCCACCTACCCTCATCCCTGCGTCACAACTCAAGAAAATGgcaaaac
aaacaacaacaaaatcacGTGGAAAACAAGGTAGAGACAGGAAACCAATG
ATAGCGCCCTTGCCGTACGTCACGCACGCTATGGTGTCCCCGCCATTTAT
CTCTGTACAACCTCAACCGCCAGCTCCACTCAAAATCAAGGAAGAACCAC
GTGACACAAACAACAATAACGACGAGCATCCATCTTTCTTGCAAGCAGAT
TTTCGACAATGGTCAGTTGAACAAGTCTACCAGCATTTCTTAAACTCAGA
TTGCTCGAAGTATGCTGATATCTTCAGAGAACAGGTTAATAATAACTTAA
TATTATCATTTTAAGTCCAGTCTTTTTACCAGCAGTAAGTTCGAAAGTAA
ATAATGGAAAATATATTGAAAGTAAACCTCCCTTCCTGGCTTTTGAGTCT
CCAATGAGTTAAGCTTTTCGTCAAAGAACTAGATTTATTTCTGGTTAATA
ATTTTTATTCGGTCTCTCGacttattttcttaaattttaaacactttttt
tttctgttttttttctttataggaGATAGATGGAAAAGCCTTGCTACATC
TTGACGAAATGAACATATCCAAACTTTTGAACGTCAAGATGGGACCTGCT
ATCAAATTATCAGCAATTATCAAGGAACTGAAAAACCCTTAAAGGGACGG
TTTCACTTGCTTTATTGTTAATATTGATGTGCCGGTTGTGATTTTAAAAC
ACCGAGCCGATGGTTGGCTTAGTCAGTCACTTTTAAAAAGACTACTAAGG
ATCACCCTTCTGTGAAgagtttctctttttttgaggaacattttgaacaa
tatataGCGCGAGTCTCCAATGGGGACTGGGACAAAGAACCACGTGACCG
TAttcgattgttttgtttttaattagattttcatttttaaagaaacaTAC
TTAAGAAATAAGTGAGCCTTTTTgggcttttttttttaatgtaaaatTCT
GTAAATAGTTTTGTACCTAGACATagtgtaaatatttttattcccaaGAT
TTTTATACGGTGTATCTTTCATTAAGTTAATAAAATATAATCATTCGAAC
AAAAATGTTCGTCGCATTGTTGTTTTTGgaacaatttttat Run BLAST on NCBI transcript from alignment at sc0000011:970190..973744+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001622 ID=TCONS_00001622|Name=TCONS_00001622|organism=Clytia hemisphaerica|type=transcript|length=3555bp|location=Sequence derived from alignment at sc0000011:970190..973744+ (Clytia hemisphaerica)
TGACATAAAGTTTTCTTTGTCTGTGGAGCTGATAGCAGACTTGAATTTTT
tacagcaatattttttttgttaataatgGAAGAAACTCAACGCAAAAGAA
GAAATGATTCTGCCACAGAAAGTAATGAAGCTTATGAGAAGAAACAGAGG
GTGGAACAATTAATTGGTGCTTTGTCAAAACCAGCAAAGAAACTTTCAAG
TAGTTCGTCTATAGATTCGATTGATACTAAACTTTGTATTGaggtaaaac
atttttcataatctgcgatacactttttttatataaggagcagtaaaatt
ttgctgaggctcggctgttcgNGTCTGcgatacatttttttatataagaa
gcagtaaaattttgctgaggcttggctgttcttatttttttggcactttc
agcctcaaattgttcttatcctgttcttacacgtttttattagaaaatct
aaattttttgaagcctttggatgttcttagctttttgagttctaagcctt
aaaatgttcttaacttgttcttaaaattttgaccagcgaaaccttatgtt
cttatatagtttgttctttttaaaaaaacgtgtttttatAGGGtataatt
gaggtattttagacgttatacccaatttttaactccttattttttggcaa
ttttgagcctcattgttcttataaaagtaaaaaaagcaccgttatatata
ttttttataagaaaaattttgggTACCTTCTTTAGAGTTCCGAGCTACAG
GCTAGCTTGAGCGGGGGGTGGATATGTACTGACCTTGATGGTCGACAGAG
GCGTGATGCTCGGTGCAGAAaatagaccctgtcagaaaCAAGCTTTTACC
ATAACTTGGACCCTGTGGACAATTATTTTGATAGAGATAATCTGTACCTT
AACAAGCAAAGTGTGGTCTCTGTCAAATGCAAActtgatattttttctaa
aacccACTGaattgaaaaatggaccctgttCAGCAGGACGTtccttacat
gttttttataagaataaactatataagaagataaggcttcgatggccaaa
atattataaacaagttaagaacattttaagacattGTGGACCCCAAAAca
ccgatttcttaggaaaatggaaaaaaatactaaaaaactggcgaaaataa
gaacatgctaagaacatttttaggcttaaaattaaaaaagttaagaacat
ttcatagcttcaaaaattttggatgtttttataaaaaaaaagtgtagtct
TATTTTACATGGTGACCTCTCGGAGCTTGAATTTTGAATTAAGGAGATGA
AATAatcaattttttctaatttgaatGAATATGTTAACATACACACTAGG
GATAGGTAAAACAGAGAAATTTAGAAATTACACATGCGATATTTTgcaat
caaaaattattttgcttcGTCAAATCACAAAGCTTGTCTTTTCTCTCATT
AAAAAGAGCGCTCCATTTCAAATATAATTTGTAGATAATACGTTTGGGAA
TATCTTTCACATTTTACTCTGACATTTGCTggtatattcaaatttgtatc
agAGCAATTATTGAATTCTCAACGCAAATGATTTGTTAATTAGAGTAACA
ATAGAGAAATGTATTCCACGGACCAGCCCTTTTGCTACTATCGAtgaatt
tccttatttttcaaTACGCTTTATCACTAGGGATCTGAGTAAAATTAGAT
tcttgtcttttctttttttatacctttttctAATTTAGAGAAGGTTTTTT
TTCTGATACGATTTCtcttatttttgaaaagaaatgcaTTTAAAATCCCT
ATGGATTGACGTAATGACTACTCcagttttctaaaaaattattctaatta
cCCATAGCAACCAGATGACGAGGAAGAAAATGTTGACGTTGTCACGTCTA
GTCCGCCATCTCCCGTTCTTATGACGTCATCGCAAAATCATGACATCATC
AAACCAGAATCAACGGACGCACCACTGTCACCAATGAAATTAAAGCCTGA
GTCAGCAGAAAAATTATCAACATCCAGCCCTACCGCTTCTTCAACCAACA
CTAAACCTATTGCCAAAGTTGTTCATTTTTCACCGAAAATCATACAAGTC
GAGAAGCCAGTATTCACAGATAAACCATCTGCAAGGAGCACTCGCGCAGC
AGCTAAAAATGCTGCAAAGAAAAGTATGTTCAGTCCGCCCATTCCACCCG
TCTCAACCGCCAACATTTACAAAGAAGCGCCACGGCAACTCACACGAGTA
CCACGTGATACAAATATTCCTCTTATTGTTTACAATCCACCTAAATCAAA
AACAACATCAAGCCTCGCATCATCGGCCCCTTCCGTAATCCCGATTGTTC
CGATTACCACAGCGCCCGGTAATGTTATCCTTCAAGCATCAATCTATCAT
GCAGGAAACCCACATCAGCCACCTACCCTCATCCCTGCGTCACAACTCAA
GAAAATGgcaaaacaaacaacaacaaaatcacGTGGAAAACAAGGTAGAG
ACAGGAAACCAATGATAGCGCCCTTGCCGTACGTCACGCACGCTATGGTG
TCCCCGCCATTTATCTCTGTACAACCTCAACCGCCAGCTCCACTCAAAAT
CAAGGAAGAACCACGTGACACAAACAACAATAACGACGAGCATCCATCTT
TCTTGCAAGCAGATTTTCGACAATGGTCAGTTGAACAAGTCTACCAGCAT
TTCTTAAACTCAGATTGCTCGAAGTATGCTGATATCTTCAGAGAACAGGT
TAATAATAACTTAATATTATCATTTTAAGTCCAGTCTTTTTACCAGCAGT
AAGTTCGAAAGTAAATAATGGAAAATATATTGAAAGTAAACCTCCCTTCC
TGGCTTTTGAGTCTCCAATGAGTTAAGCTTTTCGTCAAAGAACTAGATTT
ATTTCTGGTTAATAATTTTTATTCGGTCTCTCGacttattttcttaaatt
ttaaacactttttttttctgttttttttctttataggaGATAGATGGAAA
AGCCTTGCTACATCTTGACGAAATGAACATATCCAAACTTTTGAACGTCA
AGATGGGACCTGCTATCAAATTATCAGCAATTATCAAGGAACTGAAAAAC
CCTTAAAGGGACGGTTTCACTTGCTTTATTGTTAATATTGATGTGCCGGT
TGTGATTTTAAAACACCGAGCCGATGGTTGGCTTAGTCAGTCACTTTTAA
AAAGACTACTAAGGATCACCCTTCTGTGAAgagtttctctttttttgagg
aacattttgaacaatatataGCGCGAGTCTCCAATGGGGACTGGGACAAA
GAACCACGTGACCGTAttcgattgttttgtttttaattagattttcattt
ttaaagaaacaTACTTAAGAAATAAGTGAGCCTTTTTgggcttttttttt
taatgtaaaatTCTGTAAATAGTTTTGTACCTAGACATagtgtaaatatt
tttattcccaaGATTTTTATACGGTGTATCTTTCATTAAGTTAATAAAAT
ATAATCATTCGAACAAAAATGTTCGTCGCATTGTTGTTTTTGgaacaatt
tttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001622-exon-sc0000011-1491911889:970190..970432 | TCONS_00001622-exon-sc0000011-1491911889:970190..970432 | Clytia hemisphaerica | exon |
| TCONS_00001622-exon-sc0000011-1510915933:970190..970432 | TCONS_00001622-exon-sc0000011-1510915933:970190..970432 | Clytia hemisphaerica | exon |
| TCONS_00001622-exon-sc0000011-1575043694:970190..970432 | TCONS_00001622-exon-sc0000011-1575043694:970190..970432 | Clytia hemisphaerica | exon |
| TCONS_00001622-exon-sc0000011-1491911889:972047..973744 | TCONS_00001622-exon-sc0000011-1491911889:972047..973744 | Clytia hemisphaerica | exon |
| TCONS_00001622-exon-sc0000011-1510915933:972047..973744 | TCONS_00001622-exon-sc0000011-1510915933:972047..973744 | Clytia hemisphaerica | exon |
| TCONS_00001622-exon-sc0000011-1575043694:972047..973744 | TCONS_00001622-exon-sc0000011-1575043694:972047..973744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:970190..973744 + |
Blast
The following BLAST results are available for this feature:
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