TCONS_00001620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001620
Unique NameTCONS_00001620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001620 ID=TCONS_00001620|Name=TCONS_00001620|organism=Clytia hemisphaerica|type=transcript|length=2105bp
CTAATATTAATGCAATGTCAAAATAatagaacaaattaaaaaaacgtgGT
TCATGCCAAAAAATTGTTCCACCGAAGAATTTTCAATATTGCTGGAAAAT
TGTGCTCAGGAATTCAATTTGACAGGTTACCATTATTGCATCTTTCCATC
GTGAGAAGGCATCGTGAAGAAGAAAACCTTACATTCTAATGGGCCCACAA
ATGAAAGATTGGTCTTTCAAGaATCAACGGCCTTTTTTTCGACGATCGAG
TTACAAGCATTTGAGTGTTCAACAGATAACTTCAGCAGAATACATCAGAA
TATGCTGTTCAGATGTGATGATGATGAAGCTTGTCGTTTGATTGTGAATG
CGTTCAAAACAGCTACCAGACCAAGCAATGTAAAAATGGAGCGGCTCAAA
TTCCCAACAACCAGATGACGAGGAAGAAAATGTTGACGTTGTCACGTCTA
GTCCGCCATCTCCCGTTCTTATGACGTCATCGCAAAATCATGACATCATC
AAACCAGAATCAACGGACGCACCACTGTCACCAATGAAATTAAAGCCTGA
GTCAGCAGAAAAATTATCAACATCCAGCCCTACCGCTTCTTCAACCAACA
CTAAACCTATTGCCAAAGTTGTTCATTTTTCACCGAAAATCATACAAGTC
GAGAAGCCAGTATTCACAGATAAACCATCTGCAAGGAGCACTCGCGCAGC
AGCTAAAAATGCTGCAAAGAAAAGTATGTTCAGTCCGCCCATTCCACCCG
TCTCAACCGCCAACATTTACAAAGAAGCGCCACGGCAACTCACACGAGTA
CCACGTGATACAAATATTCCTCTTATTGTTTACAATCCACCTAAATCAAA
AACAACATCAAGCCTCGCATCATCGGCCCCTTCCGTAATCCCGATTGTTC
CGATTACCACAGCGCCCGGTAATGTTATCCTTCAAGCATCAATCTATCAT
GCAGGAAACCCACATCAGCCACCTACCCTCATCCCTGCGTCACAACTCAA
GAAAATGgcaaaacaaacaacaacaaaatcacGTGGAAAACAAGGTAGAG
ACAGGAAACCAATGATAGCGCCCTTGCCGTACGTCACGCACGCTATGGTG
TCCCCGCCATTTATCTCTGTACAACCTCAACCGCCAGCTCCACTCAAAAT
CAAGGAAGAACCACGTGACACAAACAACAATAACGACGAGCATCCATCTT
TCTTGCAAGCAGATTTTCGACAATGGTCAGTTGAACAAGTCTACCAGCAT
TTCTTAAACTCAGATTGCTCGAAGTATGCTGATATCTTCAGAGAACAGGT
TAATAATAACTTAATATTATCATTTTAAGTCCAGTCTTTTTACCAGCAGT
AAGTTCGAAAGTAAATAATGGAAAATATATTGAAAGTAAACCTCCCTTCC
TGGCTTTTGAGTCTCCAATGAGTTAAGCTTTTCGTCAAAGAACTAGATTT
ATTTCTGGTTAATAATTTTTATTCGGTCTCTCGacttattttcttaaatt
ttaaacactttttttttctgttttttttctttataggaGATAGATGGAAA
AGCCTTGCTACATCTTGACGAAATGAACATATCCAAACTTTTGAACGTCA
AGATGGGACCTGCTATCAAATTATCAGCAATTATCAAGGAACTGAAAAAC
CCTTAAAGGGACGGTTTCACTTGCTTTATTGTTAATATTGATGTGCCGGT
TGTGATTTTAAAACACCGAGCCGATGGTTGGCTTAGTCAGTCACTTTTAA
AAAGACTACTAAGGATCACCCTTCTGTGAAgagtttctctttttttgagg
aacattttgaacaatatataGCGCGAGTCTCCAATGGGGACTGGGACAAA
GAACCACGTGACCGTAttcgattgttttgtttttaattagattttcattt
ttaaagaaacaTACTTAAGAAATAAGTGAGCCTTTTTgggcttttttttt
taatgtaaaatTCTGTAAATAGTTTTGTACCTAGACATagtgtaaatatt
tttattcccaaGATTTTTATACGGTGTATCTTTCATTAAGTTAATAAAAT
ATAATCATTCGAACAAAAATGTTCGTCGCATTGTTGTTTTTGgaacaatt
tttat
Run BLAST on NCBI

protein sequence of TCONS_00001620-protein

>TCONS_00001620-protein ID=TCONS_00001620-protein|Name=TCONS_00001620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MTSSQNHDIIKPESTDAPLSPMKLKPESAEKLSTSSPTASSTNTKPIAKV
VHFSPKIIQVEKPVFTDKPSARSTRAAAKNAAKKSMFSPPIPPVSTANIY
KEAPRQLTRVPRDTNIPLIVYNPPKSKTTSSLASSAPSVIPIVPITTAPG
NVILQASIYHAGNPHQPPTLIPASQLKKMAKQTTTKSRGKQGRDRKPMIA
PLPYVTHAMVSPPFISVQPQPPAPLKIKEEPRDTNNNNDEHPSFLQADFR
QWSVEQVYQHFLNSDCSKYADIFREQVNNNLILSF
Run BLAST on NCBI

transcript from alignment at sc0000011:955374..973744+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001620 ID=TCONS_00001620|Name=TCONS_00001620|organism=Clytia hemisphaerica|type=transcript|length=18371bp|location=Sequence derived from alignment at sc0000011:955374..973744+ (Clytia hemisphaerica)
CTAATATTAATGCAATGTCAAAATAatagaacaaattaaaaaaacgtgGT
TCATGCCAAAAAATTGTTCCACCGAAGAATTTTCAATATTGCTGGAAAAT
TGTGCTCAGGAATTCAATTTGACAGGTTACCATTATTGCATCTTTCCATC
GTGAGAAGGCATCGTGAAGAAGAAAACCTTACATTCTAATGGGCCCACAA
ATGAAAGATTGGTCTTTCAAGagtaagaagattttttttgtaCCCTTCTT
CgacgcattttttttcaaataatgagttttgacttcaaaacTGTATAATT
TTGGAATCACTGaaccaaattcaaaaagttatacactaaatttttaaaag
tttttttttcacatgtacgtaaaatcttttgggaatttccccgccCTTAC
GTACAGTTTTTGTCCCGTAAGGGTCGCCCTTTAATACAATTTGATGCAAT
GATAGTTCTGTGTTATATAAGTAATCATTAAGAATCAGATCACAACATCA
CTGTGCAATGGATATCATACATCTTGCTACCGAAGGTAAGTAGAACGTTT
ATTAAACTTAAACCCTGTAAATTTCGTATTCAACTTTTAGATCAACGGCC
TTTTTTTCGACGATCGAGTTACAAGCATTTGAGTGTTCAACAGATAACTT
CAGCAGAATACATCAGAATgtaagtaaaatttttaggGAGTTTCATTTCT
ATATTGTTATAGGTTAGGGAATAGTAGTTGAATGGTGGTACgcttaattt
ttaattttgtgccGTTAATTTCAATTCTAAGATGGCGACGAAATTAAACT
AATGATAGGGGGTGGGACTTCATGGATAAACGCTTATTCAGTGTGTGTAT
GTGCTTTCAATAGATTTGATctcattttaattcttttgatCATTATGAAC
AAAGATTGTGATTCTTGTGGCCTTTTGATGTTCATATGGAGGTCCTGGTG
AATCTGATGTTAGTGATAATGGTCCTGGTGAATCTGGTATTGGTAATATG
GTCCTTGTGAATCTGGTATTGGTAATATGGTCCTTGTGAATCTAATGTTG
GTAATATGGTCCTTGTGAATCTGATGTTGGTAATATGGTCCTTGTGAATC
TGATGTTTGTGATATGGTCATGGTAAATCTGATGTTTGTGATATGGTCct
ggtgaatttgatgtttGTGATATGGTCCTTGTGAATCTGATGTTTTTGAT
ATGGTCCTGGAGAATCTGATGTTTGTGATATGGTCCTGGTGAATCTGATG
TTGGTAATATGGTCCTTGTGAATCTGATGTNGTTATATATGGTCCTGGTG
AATCTGATGTTTGTGATATGGTCcttgtaacctgataacagatgttcata
attttcttacgcgcacggtaaacctctaaaggcgcttgaaaattatacat
ctgaggaaaatagtcctcccgcgNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNg
cgcaactttgttgtcattcccagtccttttagacgaacgcggtccttacg
atttcgagattgcatattcgtcagattgtttgttttcacacatcccttta
gagcctcagcgtggtgtgcagaaaacattcacaatctgatctcaggttag
gtcCTTGTGAATCTGATGTTTTTGATATGGTCATGGTAAATCTGATGTTT
GTGATATGGTCctggtgaatttgatgtttGTGATATGGTCCTTGTGAATC
TGATGTTGGTAATATGGTCCTTATGAACCTGATGTTTGTTATATATGGTC
CTGGTGAATCTGATGTTTGTTATATATGGTCCTGGTGAATCTGATGTTTG
TGATATGGTCCTGGTGAATCTGATGTTTGTGATATGGTACTGGAGAATCT
GATGTTAGTGATATGGTCCTTGTGAATCTGATGTTAATGATATGGTCCTT
ATGAATTTGATGTTTGTGGTATGGTCCTTATNAATCTGATTTTTGTGATA
TGGTACTGGAGAATCTGATGTTAGTGATATGGTCCTTGTGAATCTGATGT
TGGTAATATGGTCCTTATGAATTTGATGTTGGTAATATGGTCCTTATGAA
CCTGATGTTTGTTATATATGGTACTGGAGAATCTGATGTTAGTGATATGG
TCCTTGTGAATCTGATGTTAGTGATATGGTCCTTATGAATTTGATGTTTG
TGGTATGGACGGTCCTTATGAATCTGATGTTGGTAATATGGTCCTTGTGA
ATCTGATGTTTGTGATATGGTCATGGTAAATCTGATGTTTGTGATATGGT
CctggtgaatttgatgtttGTGATATGGTCCTTGTGAATCTGATGTTTTT
GATATGGTCCTGGAGAATCTGATGTTTGTGATATGGTCCTGGTGAATCTG
ATGTTGGTAATATGGTCCTTGTGAATCTGATGTTTGTGATATGGTCATGG
TAAATCTGATGTTTGTGatatggttctggtgaatttgatgtttGTGATAT
GGTCCTTGTGAATCTGATGTTGGTAATATGGTCCTTATGAACCTGATGTT
TGTTATATATGGTCCTGGTGAATCTGATGTTTGTGATATGGTCCTTGTGA
ATCTGATGTTGGTAATATGGTCCTTATGAACCTGATGTTTGTTATATATG
GTCCTGGTGAATCTGATGTTTGTTATATATGGTCCTGGTGAATCTGATGT
TTGTGATATGGTCCTGGTGAATCTGATGTTTGTGATATGGTACTGGAGAA
TCTGATGTTAGTGATATGGTCCTTGTGAATCTGATGTTAATGATATGGTC
CTTATGAATTTGATGTTTGTGGTATGGTCCTTATGAATCTGATGTTTGTG
ATATGGTCCTCGAGAATCTGATGTTTTTGATATGGTCCTTGTGAATCTGA
TGTTAGTGATATGGTCCTTGTGAATCTGATGTTTGTGATATGGTCCTAGT
GAATCTGGTGTTTGTGATATGGTCCTAGTGAATCTGATGTTTGTGATCTG
GTCCCGGAGAATCTGATGTTAGTGATGATGGTCCTTGTGAATCTGATGTT
TGTGATATGGTCCTGGAGAATCTGATGTTTGTGATATAGAAGTCCTGGTG
AATCTGATGGAAAACTTGCCCAAAGTTTCGTCAAGAAATCAAGGGGAAAG
CAGGACTTGTCCGAATTTAAAACACttgttttcctttgtttttttgaaaa
tatattcaggATTCTTCTCAATATATCATAGGTCGCAATTTTAAAAGTGT
Tacaaaaatttggtaaaatctagacataggcgtagcgagataccctgcaa
aatttacggatgagagcggtttttacgataCTGTGAATtgattattgtct
ttgttttatcaaaagataatgaatatgtcataaacgtctgcactctcccg
taaattttgcagggtatctcgctacgcctatggtAGAAATCCTGTTCAAG
AATTTATCAAATTACTTCAAAAGAGGTTTTCTAGCACGTAATTTCATACC
AGAAATTAATATTTTGGACACCAAAACATATTAGGTtgcgtcatatcttc
cttcgttttgaGCGTAAAACTCTTACTTttgagctgtctattgtgtagac
atTAAATGAAGGACACATTCTACAAGTTCTTGCCACTAAAGAAGTTTTGG
AAGCAAAGAATTTGCTGGAAGAATTATATTCTTTTTCGGATTATGACgat
atattttcataaactttttggattttttcgtgAGAGTTGTATCGCATAAG
AGTCAATGTTAACATTTTCGACACTGATTATCTAGAAATTAAAGTTCCCG
ATTGTCTTTTAATGCTcttcaatatttttaagaatatattttttaaatgt
ctagttcaaaattatatttaataTCTCCTAGAACTAAAATAAAGCTCAAT
AATATCAATTCCGCATGAACAATTTTTTCGGGAAATGAgaagtttaaaaa
aacttaGGATGTTGTACCTTTAAAGTAATGAGATATTTTAGTTCCACTTT
CATACTTTACTTGTTATAAACTACAAACAAATTACCCTCAAagatattaa
aatattttttaaacattctaTCATTCACATCTGTAATTGATCTTGGTATA
TTTCTCAACACCTGGACAAGGGTCTGTCCACATGTCCATCATAACCAAAC
AAGATGACATCCCATTGCACTCCTTCAAATTATCTTTAGCATTCAAAGCA
TTACAATTTAAATTGCTTGTATAATCACCATATTTACAGATTTTGTCGGT
TAGACGACCGTAAAAGACGGACGTGATTTTGATTTTGTCGTTAACGTTAT
CGCACGTCAACATACCGAGTGCTCCCGATTGACAGAATGTCTCTGATTTG
GATTTAAGATCGATATCTGTAAAATAAACGTTAATAAAGGTTTTTCATGT
GTTGTTTTTCATGTGTTGTTTTAAGTTACATAACTTCCGCTATTCaagaa
gcaaacgttcgattagCGTAGGGGTTCacctctacagattcgaatgtttg
cctccataatggcggaaattaccgAAATAACCAAACATGGAAAACCTCTT
TGCAAAATAAGATCTTCTAATCCACAAAGCAAACAGAAGGGTGGTATTAA
AATTGTCCCATGACAAAATTTTCTATCATAAAAAATAGaaccatgaaaat
ctttttgcattaTGAGTGATTCTTCTTTCTTGTCTCAAACCTCACTTGGA
AGTTTTGTTATTCCCTGAGACAAAACGCCGTGACGTTTTGTGACGAAAAA
AATCCGACTTTACCAAAAGGTACTATCGAGGTTCAAAAGCAAAGATTGCT
TTATTCTTAAGCTCACCTTTGCATGTTTTTCCATCGTCAGCGAGATACTT
TCCTTTGGGGCACAAACAAACATATGTGCCATTCAAGTTGACACACTGAT
CCGAacatccgccattttgaatcgAACATTCATTTGTATCTGAAAAACAA
CACATGTCATAAAAAAGCTATCTCTCTTCCATTATTGTTGGGTCGGTTTC
AGCTTGATTCGGTTTGGGTATAGTAGAGAACCAGAGATACAAGTGATTGA
AAATAGATAACATCAGCAACCCGGgtggggggggtactagggcaagatgg
gttacggggatgctccgctggtcagggtaccttttgtaacctccatgagt
cccaggtagggtcgcaaaaacaccaaaacagaaaaatcagtccctcgtag
ggtgcctttttttggaaaatttggggaaaaagtagaaaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTTTGAAACATTGGCATTTGTATCCT
CCTGGTGTGTTCAGACATTTGTGGTCGCATAACGTTTGGTCCAAGAAACA
TTCGTTCCTATCTATTGAAGAGAAGAAGTGGCAATAGTTTAGTTAAGTTA
TCTGCTCGTACTGAGAACTACATATGTTTTCCTTGGTTGGTGTTTATCTG
CCTATGTGTTTTTTACCTGGTGACAATGTGTTTGATGTCTCTCTGCTAAG
TAGTTTAAAACTTAgtattgaaattaaaaatttagaatTGAAAAGGGGAA
GTTCATTGGATAacgttgaaaatttgaagaaaaaataaacaaaaatacac
gcttttttataagaatagtgtactttacTACtgtggatgagggtcaagta
tttttaagaaattgccaaaaacctgtgaaactcaccctagaaggtattct
tagggtattcttacaattttcaccctaatattcttatagaagatattctt
ataaaaaaagcgtgtatacgaAAAGTTTGCTTTCGTCCTTTCAAGTTCCA
AACGATTTATAAATTTGACTTCGCTTTCTTTAAAATGCTGAGAAAAAATT
CTTACCTTCACAAAGCTCAGCTGAATTCAAGAAATATCCTTTTGGACATG
CGCACTTGTAGCTTCCCATTGTATTAGTACACGTGGCTTGACACACTCCA
TCTCGTGCTTGACATCCACATGCTTTCTTTGTAGAACATTCGTTTATGTC
TAGAAATATAGATAATTTAGACggaatatttttttctccatttttccAAT
GTGAAAACGGTTCTTGAATGTATTTCAACTCTTGAACCTCTATGActcaa
atatctccttaactcgaaacaAGCtcatgttcgagttatagagactccgc
CTGTAGCTAATCTTGCTTTCATCTTTGTTTTACTGTTTATGTATAAAAAC
CATCCTAGAAACCTCTTTGAGCCTTTTAAACCTTTTAATCGAGTGAGAAA
GGTCTAACTTTATTATATATGATTATACCTAAACATGTCTTTCCATCACT
ATCAAGTGTGTATCCAGAATTGCATCCACATTTGAAACCTCCTTGGATAT
TGATACAGACTTGTGAACAATCGTTCTTTGAAGGATCTTGGCATTCATTG
TTATCTGAGAGGAAAAATGTTAAATGTTCATTTCCAAGTACtacataaaa
tattaaaaaatgtttcatcACCACAAAGTACACTATACTCTCCATCTATA
AACCATGagccccggcgagccattttgagtgagggggccaacatttgggg
aaaaaatgtcgcccaccatggttgggcgacgaagaaaatttttttcactt
tttacaccctcaaaacaccttaaaacgatatctaattggggagaataata
gtttttgtggtttgatttggtctcaaatcagcttaaaatagtaactctta
aaaacgtatgacatggtctaccaaaaagtggggggggggcatggaCCCCC
GGCCGTCCCGTTGACGGGGCCCATgtaaactgaaagaaaaattggaaact
CGGCCCGcttctttaaaaaatcacttCTTACCGAATTGGCAATACGATCC
ATAGTATCCATTTACACATTGACATTTATCTGGTGCAACACATTTCCCAC
CATTTTGACATGCGAAAGCACACGTGGCTATAAAAATGTAAagtataccg
ggtgacccacgaaaaagttcagacgtttcccgacatctGATACCCCTTTT
tcacgtgttttttacactttccgaaaagtgaattttgaatttaaaagctc
ataagtagagaacaaataggtcaaatttaaaaagtgatagctcaaatttt
aagttaggatatctactttctaaatatctaaactccaagcactttaggac
atttgttcggcctcaagacgtcgagaaacgtctgaaccttttcgtgggtc
acccggtatattgTTGAATATTGAAAGTACAGTGagttggaaaatgaaaa
aagactcAGTCAATCAATCCTTTCATATACCTTTAGTGTAAATATTGTTG
AAAATAGTAGTTTTTTGTTATGTATCAGGGttctgatttccgaaataccg
aataaatTTGTCATGATTTCCGAAGTAAAGCTTAAATTCCGATCATTACC
AATATTTCGAATTAATAATGGTTCTACCGGACAAATCTTCCAAATCAAAG
AACATATTTTACCGAAGATTACAGGAAATTCCGAAGTAAAAACGAAAAAC
GGTCGATCTCTCCAGAACCGAAATCTTGTACAACAAGTAACTTACGAATA
TCACAGCTTTTATGAGTGTTATCAGGTCTTTTCCATCCGTTGCAACAGTA
ATAAACATCACGGTCAATATATTTCGTCTCCAATCGGTGTGATACCACTT
GTTTCGTTCTGTTGGAAAGAGTTATCAGTTTTGAAGTATTTTTCTCAATG
cagaaatgtttattttgcctGGAGTTTTTTGGGGTTGTTTTAcaactctt
ttttataaaaaaaggtaatGGTACTGAGAAGTTTTCGTATAACCTATGTA
TAGCTTTTAGCCATTTAATGGAATCACTCTGTAAACCTTAAATTCCTAAT
ATATTTGCTGATTTCGAATGAGTGCACACGCCCAAACTAAAATCTTTGTG
TCATTTTCGAGTTAAATTCTATCCGCTTTAAGTGAGCCGGAGTGAGCACT
CTTTTTAGCTACTATATGGAAACCACCCTAAAATGGGTGTAGTTAAACCG
ACATGGTTTCCATATATTAAAGCagggaaataattcgaggcatggtgcgt
gatttgggctattttcgttACATTTGCATGATGTATCAACCACTTTTGGC
GATTTGCATGATTGTCACGAGAGCAAGATAGATTTCTACAGATGCATTTT
AAGCATATAAAAACTCTGGTCAAGGATACTTTGAAAGCTAAAGTTTTTCT
TTAGCTTTTAAAGTATCCTTGCTCTGGTGAATAAAAACTTGATTTTGGGA
CATTGAGCCTCTTTCACGAAGTTAACGTAtttttgaaaatcaaaaatttt
ttagaaagttaatattctatttttaaaataaactgctttttgaattttta
agaaaatcttttCTACATATTGCTCTagaatctattttcaaaaatcattg
aaattataTAATATCTGTGTAGTAAAACACTGAATATTTTCCTGAAAGCA
CCGACCAACCTCAAATTACATACTGCTATATGatacactgaccccccccc
aGCTCCAGCGGCTGATTGGttataaaatcatcaaatgttAATGTTGGTGA
ATTTTAATAGAAAGGAAACGTGTTAACTACACCAAATGTCAGAATGTTTA
CTCTAAGACCTAATTAATGAAGAACTTGGTAAATCCTGATGGAATACAAG
ATAGAATgacatatttctttataagaacgacTTTATGAGAGTCGAGGCAA
ATGGCCAGGGtataaaaacaactttaaacacagttcttacaaaaaaataa
caattgaggtgaaataagcaaaaattgtaTGCTTTTTTATTATGAAAATT
CAATAAATACTTCAATAAATTAATGGGACAAAGATAGCCTTaagtatctt
aaaatttcgatctaaaataagaatatcataaCGATTCTTCggtatagaaa
aaaaaaaaaacatcctaGGCTCAACTAAGAGTTTTGGAAGAAAATATGAG
TAACTCAAGCATGtggtaaacaataaaattgtaatcaaataaagtattta
ttgaTTTATCTTATTGAAACTCATAGGAATCATAGAAAtgaaaatgagat
aaaaaatgagaacagcAAGTTCTCAACAAAAAATTACTGCTTCAAATAAA
CGAGACTGTAAAACCAAGAAGTCTTATAAAGGCCGCAAAATCTCCAAGAG
TcctaaaatttctcaaaatttattgacataACTTAAAATCTATACTAGGA
AGTCctaaaaatttccataaattccatatatcctaaaaaaattcataagt
tcaaaaacccagaaaagtcaaagattataaaatatataaatctatttctt
ttgttgaaaTAATCCATAATTTTACCTCTGGACAAATCGACCCCTGGGCC
TGGGTATGActgttttttgcaattttttcaagaactggGATGGTTGTTAC
TTTAAAGGTAAATTGGGTGTGTCAGGCATGTGCAAAATTCTGTCTCTCAC
agggtcaattttcaatttttggtttgGACATACCCATCACTTAATACCCC
TGGTCCCTGAAAAAATCACCAAAGCCCAATGAAGAGTTTTTTCTGGCACA
GCACAATCatttataccgtcaactgctctaacttgggactatctgacaaa
acatgggacggcaattcggccaccatttcaccgaacctccaaaataattt
gatttgagttaatgaacggcgtatcaaaaaaatacacgatttctttttcg
caccaagtaggcttttaaatcaaaatatgaagaaaatccgtagtggaata
catgccagtgtctggaacgaagaagaacaaattagtggcaaaacgacagc
gtttgacgtcacttgcacGGGCGGCATATTACACGCTTGTTATTGgttaa
tcccatcaggcgaTAAGCGGTTAGGCGAaaggcgttctctaattctccaa
tcagcgtCCAGTCAttctgaatgaaaacaaaaaagttaaaaagggcgcgt
taTCAGTGtccagtgaaagttatcgtgacatgttatgacagaaagtaaga
ttgataaacttggtggagtgcAGGCCAGAttgtcaacagtcccatgtttt
gaNTCAAACCAATCAATGTCGTCAGTCGTCATCAGCCAAAAGTTTCCAGg
tttttggttttgttgacaaaatgttttgtttactttcttgtTGTCGGGGG
GAAACCCGATTTGCCGATTAGTGACTTTCCCGCCTATTTCCCGATTTCCT
ATACTTGGTTGGACTTAccatagctaaaaacaaattcgtaaatgtaaagt
taatttagtgagtttgtccgtagaacgttcgaatcgttcgaaaagttgca
aaaaagtggaagatttgaaaaatgcNCATATTGAAGCAAACAAATCCCAT
TTGATGCACTATCATGGTCCATCAGGCTGTCAGTTGTCGTCCGTCCAGCT
GTCAGATACCGTCCGTCAAACATCAATAATAATCATATCCAGATATCATA
ACATATAAACTTATCAAGCATATGATGAATGTATGCTATGCATATACAGC
ACTCGCACCTGCACACACGTATTACGTGATTAATATATCGCACTTGATCA
TCAAGTCGTTGTTCCCTTGTTTCTTCCATCCACTTGAGTAAGCTGATATT
TCTAGTCTTTACCAGCTGTGACTGTTCCCATGCCATTTCCAGAAGAATNA
TTAAAATcgcatcacgcatcacgcaaacggctgggtTCACAAAACAAAGA
ACCGTGATAATCTAAGAGATTTAATATGATTCCAGTATCACTTAATTTGT
TGTGCGATTCGATCATGACATTACCCTAATCTTGAAACTTTCTTGCATCC
CCAGAAATCACATGTTTTGAAGTACACAGTGGTCCAACGAGTTGACAAAT
AAGTCGTGTTGACTAGCTTGGTCACTGTTTCTTGGTATTTGCAAACATTT
GATCTAAAAAGTGGTAAACAAATTTTCAGTCAATCTACCAAAATGAAACA
TATTTATACCAGAGATAAAATGTTTAGAGAAAATATTCGATATTTATTCG
AGTTGTGATGCTCACGGTAGCAGATAACTACTAACTAAGACCTGTATGAT
CTGCCTCGTTGACCTCAAGGTGCTGCTAAGTTTTAAAGACTATCGAAATA
GCTGTTTTTAAGGAATAAAAATGGAATGAGTTTTGTCACCGACATTTTAT
GTttagtagcgtagccaagaggggcgaaaaatttgtgtaggagggcagat
ttttatgacgctgtaattatcttttaatattatgaatagataattacagt
gtcttaaaaatctgctctcctacacaaattttgcacccctCTTGGCTAAG
CTACTGCTGTCGACAGTAAGAGCCATCTCCTCTCATCCCATATGACGCta
ttaaaaatttattaatcATTTCTTTCGAGTTCGACTTCTACCAGTTTTGC
CTGCAACTCTTTCGGCCATAAAAAGTCTTTCCAGTCCTAATTCGAATGGC
CCatctcaaaaaaattcaaaatcctgTCTACTTTTGAACTAAAGACACGC
GGTTGCGTCTCACGAAAAATGCTACAAATCTTAAGAGTTTATTCCCTAAA
TCGACTATAAAGTCAATATCCACAACGTATTCGAACCTACCCTGTACGAT
TTAGTCCATTTGTTTTGTCATAGATGCTGTTCAGATGTGATGATGATGAA
GCTTGTCGTTTGATTGTGAATGCGTTCAAAACAGCTACCAGACCAAGCAA
TGTAAAAATGGAGCGGCTCAAATTCCCAAGTaacattatttttgtttaat
ctttcctgtatttctttgatattttctaaaacaatgATTTTTATTACAGA
AAAAACCATAATGTTACCGTAACAGaacctttcaaaaatttaacaatAAA
GGCAAAATTCTCTTTTCAGCGACTTCGTAGCATAAAGGCGTCCGCTCTTG
TACTACCAAAGAAATTCTGTGAAAAACAAAAACGCTTCTCTTAAAATGCT
TTTCAATGTAAAATATGTAAGGCCAAATGTTTGCTATTGAAATTCCCAAT
TTATAAGAGTGTACATATTGGATTCAACATTCATCTTTTTAGCATTTAAC
GATGAATACTGAGACAAAACCTCATTTACTATTTCTTAGAATCTTCTTTC
ACTTTCCGGTAAAACATGCATAATAAGCTCAATGCTCTATAATGTTTTGA
TTATGTCAATTTTTTCATCAGAAATTTGACCCCGTAATGACAATTGGTCG
CTTTTGTATCATATTTCACCTTACAGAGGAATAAATTTTGTCTTTTACTT
CCTAGTTCAAGTTTCTCTTTAGAATGCAAAAGCCTTCACCCCTCTTTTAC
GGCCACTTTACTGGCTAGATGCCCAGCTTCAGTCATCAATAGCTTCTTTT
ATTGAACACCTTTAATCCTAAGGCCGTGGCAAATCGTCTCCTCTCTTAAC
CCAATTTCGGTTTCCTACCACGCTACCGATATAAAATATatcaatatctt
tccaacagtaCTAAAAATGAACTCCAAACGAAAAGAAACGGTCGATGGCT
GTTTAAGCCAAATACGTACTTGAAATGCTACATCAAGCCACCACACCAAA
TCTTTCTACTTTAACGACAAAAACTGTTTTTCATCGCGTATTTAAAAAAT
GGCCCAAATTAGACAATCAAATTATTGTCCAACCTTGGAAATTTCCCCAC
CTTTACATACTCTGAGTACAACTCACCAAACAACAAATTGCAACACTTCA
AAATTGCTAAAACCTCAAAATCGCTAAAACCTTTCACGATATAAATAAAG
GTACTCCGTCCAACAAGACAACGAAATTCAAACACAAACGTTTCGTTGTA
CAGTAGGTTCAAAATGAATTTCACTTTTGTTTGGGTTGATGATTTTTCAG
CTGATTCTATATATGTGAACAGATGACAGTACTTGCTGAAAGATCTTGTT
TGATGCTTACACATTTCATTATAAACCTCATAAtatgtttttcataagaa
tcaaAACATTCTAGGGAACCTTTTTTAAACGACTAAGTATTCTCATTATA
TAATTAAGATTATGTATATTAATTTTTGGTCTTTCGGGTCTCCCCATTTT
ATTTCCATTCAtacagtttgaaaatttttatcaaaatctttgtttgaatG
TATTTCAGTTTGAAACtcatctttctttctttctatgAAATTCATCTTTC
TTATAAACTCTTTTTGTTACAATGACGTCATTAACCAAATAAACAGTCAA
ATACACTCATGGTATCCAATTCTGATGATCAGAGAAATTAGGAGATATCA
TTTTGCTGAAAGAAAATGCTTGAAGTTATTTAAGTCAATTACTTATAATC
TACCCTTTTAATTTCCTCCTTTATGCAGAGGCCCCAGTAAATGTACTTTC
GAAAACACCTCAGTATCGTTGATCAAGTGGACTGACCCCATAAGGAATCT
GGGCTAGCATAACAAGACTTTTCCAAACcgttaagaccatgttcagacgt
caCTGCACTGTATCGTTctgaaacgaaacggttcctaaacaagtgtgaac
gtcaaaattcgaaacgtcaaaaaataagacgttacaaagcaaaacagata
gaaatggtttcgctccacttttttcatccgaacggaactgctccgttttc
ttacTCCGTTTACTTGccccgaaacgttccgaaaccaatataaacactct
cgatccgtaacTGAAACCATATCGGAAcgatacgaaaccgtaacgtctga
aaggggggggggttattgGTTATAGATTCTCTGGAAATGGAATAATCAAG
TAAAATTCTCTATTTTGCACCAAACCCGGGCATTTAACCAACTCTCTAGG
TTTAGTCAGGATCTAGGCGTATTGAACGTCATTGATTTAGGTAACAATTC
AATATTTCATCGTAgatgacacccctgtctcacatccCCGTTGGAATTTT
ATGCCACAGTGgagatgaaaatttcaaaaaatccagcGGAGatgtttgga
gtgcaatttttttctattcatttttaagtggggatgaaaaaagtaaattt
tccagtggggctaaaattttAGGATATTTTTCTCATAGGTCATAGGGGAC
GAAACTTTGGCTAAGTTCTCCATTGGGTTGGggtcccactgggtctgtga
catAGGGGGGGGTACAAGGGTAATGAAATTATCTTAAAACACCCCCTGTT
ACGGGCAAGGAtagtttttggtattttttgttttggaaattATTCATGAC
GCACTCAAGATAGATAATTATAATTTTCGCGATGGTAATTATCAAACTAa
ttattctttcaaaaattcagaaattccCATGCCATTATGGCTATCAAAAA
TTattgaacaaaagaaaaatagcgTAAAAAATGCTTGTAGCGATTGTGAC
ACATAATTagctttataattttttcaagtCCCACGAGACATCCCTCGAGA
GAGAATTACAGTTTTGACTACAGTAGTTTTATGTAACGTTGATTGAATTG
TGATTGATTTGACATAAAGTTTTCTTTGTCTGTGGAGCTGATAGTAGACT
TGANTTGTGATTGATTTGACATAAAGTTTTCTTTGTCTGTGGAGCTGATA
GCAGACTTGAATTTTTtacagcaatattttttttgttaataatgGAAGAA
ACTCAACGCAAAAGAAGAAATGATTCTGCCACAGAAAGTAATGAAGCTTA
TGAGAAGAAACAGAGGGTGGAACAATTAATTGGTGCTTTGTCAAAACCAG
CAAAGAAACTTTCAAGTAGTTCGTCTATAGATTCGATTGATACTAAACTT
TGTATTGaggtaaaacatttttcataatctgcgatacactttttttatat
aaggagcagtaaaattttgctgaggctcggctgttcgNGTCTGcgataca
tttttttatataagaagcagtaaaattttgctgaggcttggctgttctta
tttttttggcactttcagcctcaaattgttcttatcctgttcttacacgt
ttttattagaaaatctaaattttttgaagcctttggatgttcttagcttt
ttgagttctaagccttaaaatgttcttaacttgttcttaaaattttgacc
agcgaaaccttatgttcttatatagtttgttctttttaaaaaaacgtgtt
tttatAGGGtataattgaggtattttagacgttatacccaatttttaact
ccttattttttggcaattttgagcctcattgttcttataaaagtaaaaaa
agcaccgttatatatattttttataagaaaaattttgggTACCTTCTTTA
GAGTTCCGAGCTACAGGCTAGCTTGAGCGGGGGGTGGATATGTACTGACC
TTGATGGTCGACAGAGGCGTGATGCTCGGTGCAGAAaatagaccctgtca
gaaaCAAGCTTTTACCATAACTTGGACCCTGTGGACAATTATTTTGATAG
AGATAATCTGTACCTTAACAAGCAAAGTGTGGTCTCTGTCAAATGCAAAc
ttgatattttttctaaaacccACTGaattgaaaaatggaccctgttCAGC
AGGACGTtccttacatgttttttataagaataaactatataagaagataa
ggcttcgatggccaaaatattataaacaagttaagaacattttaagacat
tGTGGACCCCAAAAcaccgatttcttaggaaaatggaaaaaaatactaaa
aaactggcgaaaataagaacatgctaagaacatttttaggcttaaaatta
aaaaagttaagaacatttcatagcttcaaaaattttggatgtttttataa
aaaaaaagtgtagtctTATTTTACATGGTGACCTCTCGGAGCTTGAATTT
TGAATTAAGGAGATGAAATAatcaattttttctaatttgaatGAATATGT
TAACATACACACTAGGGATAGGTAAAACAGAGAAATTTAGAAATTACACA
TGCGATATTTTgcaatcaaaaattattttgcttcGTCAAATCACAAAGCT
TGTCTTTTCTCTCATTAAAAAGAGCGCTCCATTTCAAATATAATTTGTAG
ATAATACGTTTGGGAATATCTTTCACATTTTACTCTGACATTTGCTggta
tattcaaatttgtatcagAGCAATTATTGAATTCTCAACGCAAATGATTT
GTTAATTAGAGTAACAATAGAGAAATGTATTCCACGGACCAGCCCTTTTG
CTACTATCGAtgaatttccttatttttcaaTACGCTTTATCACTAGGGAT
CTGAGTAAAATTAGATtcttgtcttttctttttttatacctttttctAAT
TTAGAGAAGGTTTTTTTTCTGATACGATTTCtcttatttttgaaaagaaa
tgcaTTTAAAATCCCTATGGATTGACGTAATGACTACTCcagttttctaa
aaaattattctaattacCCATAGCAACCAGATGACGAGGAAGAAAATGTT
GACGTTGTCACGTCTAGTCCGCCATCTCCCGTTCTTATGACGTCATCGCA
AAATCATGACATCATCAAACCAGAATCAACGGACGCACCACTGTCACCAA
TGAAATTAAAGCCTGAGTCAGCAGAAAAATTATCAACATCCAGCCCTACC
GCTTCTTCAACCAACACTAAACCTATTGCCAAAGTTGTTCATTTTTCACC
GAAAATCATACAAGTCGAGAAGCCAGTATTCACAGATAAACCATCTGCAA
GGAGCACTCGCGCAGCAGCTAAAAATGCTGCAAAGAAAAGTATGTTCAGT
CCGCCCATTCCACCCGTCTCAACCGCCAACATTTACAAAGAAGCGCCACG
GCAACTCACACGAGTACCACGTGATACAAATATTCCTCTTATTGTTTACA
ATCCACCTAAATCAAAAACAACATCAAGCCTCGCATCATCGGCCCCTTCC
GTAATCCCGATTGTTCCGATTACCACAGCGCCCGGTAATGTTATCCTTCA
AGCATCAATCTATCATGCAGGAAACCCACATCAGCCACCTACCCTCATCC
CTGCGTCACAACTCAAGAAAATGgcaaaacaaacaacaacaaaatcacGT
GGAAAACAAGGTAGAGACAGGAAACCAATGATAGCGCCCTTGCCGTACGT
CACGCACGCTATGGTGTCCCCGCCATTTATCTCTGTACAACCTCAACCGC
CAGCTCCACTCAAAATCAAGGAAGAACCACGTGACACAAACAACAATAAC
GACGAGCATCCATCTTTCTTGCAAGCAGATTTTCGACAATGGTCAGTTGA
ACAAGTCTACCAGCATTTCTTAAACTCAGATTGCTCGAAGTATGCTGATA
TCTTCAGAGAACAGGTTAATAATAACTTAATATTATCATTTTAAGTCCAG
TCTTTTTACCAGCAGTAAGTTCGAAAGTAAATAATGGAAAATATATTGAA
AGTAAACCTCCCTTCCTGGCTTTTGAGTCTCCAATGAGTTAAGCTTTTCG
TCAAAGAACTAGATTTATTTCTGGTTAATAATTTTTATTCGGTCTCTCGa
cttattttcttaaattttaaacactttttttttctgttttttttctttat
aggaGATAGATGGAAAAGCCTTGCTACATCTTGACGAAATGAACATATCC
AAACTTTTGAACGTCAAGATGGGACCTGCTATCAAATTATCAGCAATTAT
CAAGGAACTGAAAAACCCTTAAAGGGACGGTTTCACTTGCTTTATTGTTA
ATATTGATGTGCCGGTTGTGATTTTAAAACACCGAGCCGATGGTTGGCTT
AGTCAGTCACTTTTAAAAAGACTACTAAGGATCACCCTTCTGTGAAgagt
ttctctttttttgaggaacattttgaacaatatataGCGCGAGTCTCCAA
TGGGGACTGGGACAAAGAACCACGTGACCGTAttcgattgttttgttttt
aattagattttcatttttaaagaaacaTACTTAAGAAATAAGTGAGCCTT
TTTgggcttttttttttaatgtaaaatTCTGTAAATAGTTTTGTACCTAG
ACATagtgtaaatatttttattcccaaGATTTTTATACGGTGTATCTTTC
ATTAAGTTAATAAAATATAATCATTCGAACAAAAATGTTCGTCGCATTGT
TGTTTTTGgaacaatttttat

Coding sequence (CDS) from alignment at sc0000011:955374..973744+

>TCONS_00001620 ID=TCONS_00001620|Name=TCONS_00001620|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000011:955374..973744+ (Clytia hemisphaerica)
ATGACGTCATCGCAAAATCATGACATCATCAAACCAGAATCAACGGACGC
ACCACTGTCACCAATGAAATTAAAGCCTGAGTCAGCAGAAAAATTATCAA
CATCCAGCCCTACCGCTTCTTCAACCAACACTAAACCTATTGCCAAAGTT
GTTCATTTTTCACCGAAAATCATACAAGTCGAGAAGCCAGTATTCACAGA
TAAACCATCTGCAAGGAGCACTCGCGCAGCAGCTAAAAATGCTGCAAAGA
AAAGTATGTTCAGTCCGCCCATTCCACCCGTCTCAACCGCCAACATTTAC
AAAGAAGCGCCACGGCAACTCACACGAGTACCACGTGATACAAATATTCC
TCTTATTGTTTACAATCCACCTAAATCAAAAACAACATCAAGCCTCGCAT
CATCGGCCCCTTCCGTAATCCCGATTGTTCCGATTACCACAGCGCCCGGT
AATGTTATCCTTCAAGCATCAATCTATCATGCAGGAAACCCACATCAGCC
ACCTACCCTCATCCCTGCGTCACAACTCAAGAAAATGgcaaaacaaacaa
caacaaaatcacGTGGAAAACAAGGTAGAGACAGGAAACCAATGATAGCG
CCCTTGCCGTACGTCACGCACGCTATGGTGTCCCCGCCATTTATCTCTGT
ACAACCTCAACCGCCAGCTCCACTCAAAATCAAGGAAGAACCACGTGACA
CAAACAACAATAACGACGAGCATCCATCTTTCTTGCAAGCAGATTTTCGA
CAATGGTCAGTTGAACAAGTCTACCAGCATTTCTTAAACTCAGATTGCTC
GAAGTATGCTGATATCTTCAGAGAACAGGTTAATAATAACTTAATATTAT
CATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000843XLOC_000843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001620-exon-sc0000011-1491911889:955374..955595TCONS_00001620-exon-sc0000011-1491911889:955374..955595Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1510915933:955374..955595TCONS_00001620-exon-sc0000011-1510915933:955374..955595Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1575043694:955374..955595TCONS_00001620-exon-sc0000011-1575043694:955374..955595Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1491911889:955964..956042TCONS_00001620-exon-sc0000011-1491911889:955964..956042Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1510915933:955964..956042TCONS_00001620-exon-sc0000011-1510915933:955964..956042Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1575043694:955964..956042TCONS_00001620-exon-sc0000011-1575043694:955964..956042Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1491911889:967297..967402TCONS_00001620-exon-sc0000011-1491911889:967297..967402Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1510915933:967297..967402TCONS_00001620-exon-sc0000011-1510915933:967297..967402Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1575043694:967297..967402TCONS_00001620-exon-sc0000011-1575043694:967297..967402Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1491911889:972047..973744TCONS_00001620-exon-sc0000011-1491911889:972047..973744Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1510915933:972047..973744TCONS_00001620-exon-sc0000011-1510915933:972047..973744Clytia hemisphaericaexon
TCONS_00001620-exon-sc0000011-1575043694:972047..973744TCONS_00001620-exon-sc0000011-1575043694:972047..973744Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001620-proteinTCONS_00001620-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:955374..973744 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.961114	0.949144	1.9751	1.4663	1.33025	1.17952	2.25163	1.93728	1.21373	1.90136	1.10514	1.15717	1.02353	0.87738	0.538519	0.679901	0.281024	0.548848	0.481943	0.623145	0.943085	0.733913	2.34295	2.28367	1.26967	2.62278	0.960189	0.755789	4.08732	3.71227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013761SAM/pointed
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top