TCONS_00001610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001610
Unique NameTCONS_00001610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001610 ID=TCONS_00001610|Name=TCONS_00001610|organism=Clytia hemisphaerica|type=transcript|length=850bp
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA
AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG
TATCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATC
ACGGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTT
TCCCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTG
ATTCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACA
TCAGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTC
ATCTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTC
ACCGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTT
GGCgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATAT
TTCTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGC
GCAATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGT
ATCATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGC
TGCCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAA
CGTCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATA
ATTGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGAT
ACCTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCA
Run BLAST on NCBI

protein sequence of TCONS_00001610-protein

>TCONS_00001610-protein ID=TCONS_00001610-protein|Name=TCONS_00001610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
DAVKMTSADINLTFFTENNGSRSERTFRKSQVTVSRLSTVFKIDQASLFI
TEEFSGPSEFPDSSGNFPSLDNVRVETVYEVEGDSLTIRPIPSTPNTPST
SAYEIPSSSSDRQGSSSSPEFGAFRRYNLPGPAHRKRARTSQDYLLKIFL
GDFEGKKIVSTNRMQHISINASNSNVNAITEMARNVFQIDDLVLASASGC
IIEDTEVTRDFTFWRSAARKIYAVQEEQFQRQPTSTAQRASSDDNANREI
IEKLDSMERTIERNSLIPNIRNISGLENAIWST
Run BLAST on NCBI

transcript from alignment at sc0000011:837210..839255+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001610 ID=TCONS_00001610|Name=TCONS_00001610|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at sc0000011:837210..839255+ (Clytia hemisphaerica)
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG TATCAAGACTTTCTACGGTATTTAAGGTGAGCTTTTACTGACCTTCTATC ACTCATTTTGTAAACAGTTATGGTAATGAccgaaaatttaaaacagtcCA ACATttaattctaaatattttttgagtccGATTAAAAGCAGAGCGGAAAG ttgctgactctgcagaaaataagaaatatttattctaaaattttgggTTT CAAAAAAAGTATTGAATTATTAATGAATTCCAGAGTGAGAAGAACAATTG TGGCTTGGCTATGTTAAATACAactctctttttttattttttttagatcG ACCAAGCGTCACTATTCATCACGGAAGAGTTCAGCGGACCATCTGAGTTC CCAGACTCATCAGGAAATTTTCCCTCTCTTGACAACGTTAGGGTCGAAAC AGTGTACGAAGTAGAAGGTGATTCTTTGACGATTCGTCCAATACCAAGCA CGCCAAATACGCCAAGCACATCAGCCTATGAAATCCCATCGTCATCTTCA GATCGACAAGGATCATCCTCATCTCCAGAATTTGGCGCATTTAGAAGATA CAATTTGCCTGGGTAAGTCTAATATTTTTTAAgctaacattacagaatca cgACTGGGtactgatttttttatgattttctttttgattttttttcaatg attgcgttatttttacagatttttacaTTGATTTTTTAACTAATTAGATA CTTTTGATCATAATCTGAtcataattattttttaaattctttaattggtt tctatttctttttttgaaatgtttttctgATCATTTAATTAATGGTTCTG ACTTTTGCAAAAATCTCAGCAAAAGAAGCAAGATTTATGTTGACGGAATT CACTTCTTTCTTTTAGACCGGCTCACCGAAAAAGAGCAAGAACTTCTCAA GATTATTTATTGAAGATCTTTCTTGGCgactttgaaggaaaaaaaatagg taattttaatatttctttttctcttttttattagaatacttgaatttgtt ttttttttatgttccttaattttttttgtcaattttcagtCCGAGTGTTC TTATATAAACTATAACTTATATAAActtctaaaatcaaaaagtatacaTT TTTTCCTTGTTATTATACTTTCCTTGAAATAACGTTTTGCAATATAGATA GCCAAATCACAGTCAGGTTGGGTTTAAGTTTCAAACATTGtaaatatcat tgtttttctctGTTTGTACAGTATCAACCAACAGAATGCAACATATTTCT ATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGCAA TGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTATCA TTGAAGACACGGAGGTTACAAGAGGTAATCATATTTTACTTGAAGTTTGA CCAGATTTGGTGAGGGGTAAATCAACATGAAAAGTTGTgcgatatttttt gattttttgactttatttctgacttttttatgttttattttactATTTGG ACTttagattttttgactttttcgcgGAGATGTACTATAATTTAGTAATT TGAGTAATTTACTCCTCCAGATTCGGTTCCAATTTTTCCTATTATTGTTT GCTCATCTCTTTTTGAAAGATTATATCGAATTAATTAATGGAATCTTATC TTTAACACCACGTCTggtaattttttctctaaaagaTCATATTTGCTTCA TAatcatttcaatatttcttTCAGATTTCACTTTCTGGAGATCGGCTGCC AGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACGTC TACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAATTG AAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATACCT AATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCA

Coding sequence (CDS) from alignment at sc0000011:837210..839255+

>TCONS_00001610 ID=TCONS_00001610|Name=TCONS_00001610|organism=Clytia hemisphaerica|type=CDS|length=4245bp|location=Sequence derived from alignment at sc0000011:837210..839255+ (Clytia hemisphaerica)
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA
AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG
TATCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATC
ACGGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTT
TCCCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTG
ATTCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACA
TCAGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTC
ATCTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTC
ACCGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTT
GGCgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATAT
TTCTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGC
GCAATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGT
ATCATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGC
TGCCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAA
CGTCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATA
ATTGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGAT
ACCTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCG
ATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAA
AATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGT
ATCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCA
CGGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTT
CCCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGA
TTCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACAT
CAGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCA
TCTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCA
CCGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTG
GCgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATT
TCTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCG
CAATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTA
TCATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCT
GCCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAAC
GTCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAA
TTGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATA
CCTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCGA
TGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAAA
ATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGTA
TCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCAC
GGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTTC
CCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGAT
TCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACATC
AGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCAT
CTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCAC
CGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTGG
CgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATTT
CTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGC
AATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTAT
CATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCTG
CCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACG
TCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAAT
TGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATAC
CTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCGAT
GCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAAAA
TAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGTAT
CAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCACG
GAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTTCC
CTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGATT
CTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACATCA
GCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCATC
TCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCACC
GAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTGGC
gactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATTTC
TATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGCA
ATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTATC
ATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCTGC
CAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACGT
CTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAATT
GAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATACC
TAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCGATG
CAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAAAAT
AATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGTATC
AAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCACGG
AAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTTCCC
TCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGATTC
TTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACATCAG
CCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCATCT
CCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCACCG
AAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTGGCg
actttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATTTCT
ATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGCAA
TGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTATCA
TTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCTGCC
AGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACGTC
TACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAATTG
AAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATACCT
AATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000839XLOC_000839Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001610-proteinTCONS_00001610-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001610-exon-sc0000011-1491911889:837210..837335TCONS_00001610-exon-sc0000011-1491911889:837210..837335Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1510915933:837210..837335TCONS_00001610-exon-sc0000011-1510915933:837210..837335Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1575043694:837210..837335TCONS_00001610-exon-sc0000011-1575043694:837210..837335Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1491911889:837606..837871TCONS_00001610-exon-sc0000011-1491911889:837606..837871Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1510915933:837606..837871TCONS_00001610-exon-sc0000011-1510915933:837606..837871Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1575043694:837606..837871TCONS_00001610-exon-sc0000011-1575043694:837606..837871Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1491911889:838176..838258TCONS_00001610-exon-sc0000011-1491911889:838176..838258Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1510915933:838176..838258TCONS_00001610-exon-sc0000011-1510915933:838176..838258Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1575043694:838176..838258TCONS_00001610-exon-sc0000011-1575043694:838176..838258Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1491911889:838531..838683TCONS_00001610-exon-sc0000011-1491911889:838531..838683Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1510915933:838531..838683TCONS_00001610-exon-sc0000011-1510915933:838531..838683Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1575043694:838531..838683TCONS_00001610-exon-sc0000011-1575043694:838531..838683Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1491911889:839034..839255TCONS_00001610-exon-sc0000011-1491911889:839034..839255Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1510915933:839034..839255TCONS_00001610-exon-sc0000011-1510915933:839034..839255Clytia hemisphaericaexon
TCONS_00001610-exon-sc0000011-1575043694:839034..839255TCONS_00001610-exon-sc0000011-1575043694:839034..839255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:837210..839255 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 12.3282 8.82007 4.18065 6.13159 0.697329 9.08608 0 0.563401 0.103587 0.0660479 0 0 0 0 0 0 0 0 0 0 0.0594242 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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