TCONS_00001610 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001610
Unique Name	TCONS_00001610
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	850

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000011:837210..839255+
coding sequence from alignment at sc0000011:837210..839255+

transcript sequence

>TCONS_00001610 ID=TCONS_00001610|Name=TCONS_00001610|organism=Clytia hemisphaerica|type=transcript|length=850bp
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA
AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG
TATCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATC
ACGGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTT
TCCCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTG
ATTCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACA
TCAGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTC
ATCTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTC
ACCGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTT
GGCgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATAT
TTCTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGC
GCAATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGT
ATCATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGC
TGCCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAA
CGTCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATA
ATTGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGAT
ACCTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCA

Run BLAST on NCBI

protein sequence of TCONS_00001610-protein

>TCONS_00001610-protein ID=TCONS_00001610-protein|Name=TCONS_00001610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
DAVKMTSADINLTFFTENNGSRSERTFRKSQVTVSRLSTVFKIDQASLFI
TEEFSGPSEFPDSSGNFPSLDNVRVETVYEVEGDSLTIRPIPSTPNTPST
SAYEIPSSSSDRQGSSSSPEFGAFRRYNLPGPAHRKRARTSQDYLLKIFL
GDFEGKKIVSTNRMQHISINASNSNVNAITEMARNVFQIDDLVLASASGC
IIEDTEVTRDFTFWRSAARKIYAVQEEQFQRQPTSTAQRASSDDNANREI
IEKLDSMERTIERNSLIPNIRNISGLENAIWST

Run BLAST on NCBI

transcript from alignment at sc0000011:837210..839255+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001610 ID=TCONS_00001610|Name=TCONS_00001610|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at sc0000011:837210..839255+ (Clytia hemisphaerica)
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA
AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG
TATCAAGACTTTCTACGGTATTTAAGGTGAGCTTTTACTGACCTTCTATC
ACTCATTTTGTAAACAGTTATGGTAATGAccgaaaatttaaaacagtcCA
ACATttaattctaaatattttttgagtccGATTAAAAGCAGAGCGGAAAG
ttgctgactctgcagaaaataagaaatatttattctaaaattttgggTTT
CAAAAAAAGTATTGAATTATTAATGAATTCCAGAGTGAGAAGAACAATTG
TGGCTTGGCTATGTTAAATACAactctctttttttattttttttagatcG
ACCAAGCGTCACTATTCATCACGGAAGAGTTCAGCGGACCATCTGAGTTC
CCAGACTCATCAGGAAATTTTCCCTCTCTTGACAACGTTAGGGTCGAAAC
AGTGTACGAAGTAGAAGGTGATTCTTTGACGATTCGTCCAATACCAAGCA
CGCCAAATACGCCAAGCACATCAGCCTATGAAATCCCATCGTCATCTTCA
GATCGACAAGGATCATCCTCATCTCCAGAATTTGGCGCATTTAGAAGATA
CAATTTGCCTGGGTAAGTCTAATATTTTTTAAgctaacattacagaatca
cgACTGGGtactgatttttttatgattttctttttgattttttttcaatg
attgcgttatttttacagatttttacaTTGATTTTTTAACTAATTAGATA
CTTTTGATCATAATCTGAtcataattattttttaaattctttaattggtt
tctatttctttttttgaaatgtttttctgATCATTTAATTAATGGTTCTG
ACTTTTGCAAAAATCTCAGCAAAAGAAGCAAGATTTATGTTGACGGAATT
CACTTCTTTCTTTTAGACCGGCTCACCGAAAAAGAGCAAGAACTTCTCAA
GATTATTTATTGAAGATCTTTCTTGGCgactttgaaggaaaaaaaatagg
taattttaatatttctttttctcttttttattagaatacttgaatttgtt
ttttttttatgttccttaattttttttgtcaattttcagtCCGAGTGTTC
TTATATAAACTATAACTTATATAAActtctaaaatcaaaaagtatacaTT
TTTTCCTTGTTATTATACTTTCCTTGAAATAACGTTTTGCAATATAGATA
GCCAAATCACAGTCAGGTTGGGTTTAAGTTTCAAACATTGtaaatatcat
tgtttttctctGTTTGTACAGTATCAACCAACAGAATGCAACATATTTCT
ATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGCAA
TGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTATCA
TTGAAGACACGGAGGTTACAAGAGGTAATCATATTTTACTTGAAGTTTGA
CCAGATTTGGTGAGGGGTAAATCAACATGAAAAGTTGTgcgatatttttt
gattttttgactttatttctgacttttttatgttttattttactATTTGG
ACTttagattttttgactttttcgcgGAGATGTACTATAATTTAGTAATT
TGAGTAATTTACTCCTCCAGATTCGGTTCCAATTTTTCCTATTATTGTTT
GCTCATCTCTTTTTGAAAGATTATATCGAATTAATTAATGGAATCTTATC
TTTAACACCACGTCTggtaattttttctctaaaagaTCATATTTGCTTCA
TAatcatttcaatatttcttTCAGATTTCACTTTCTGGAGATCGGCTGCC
AGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACGTC
TACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAATTG
AAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATACCT
AATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCA

Coding sequence (CDS) from alignment at sc0000011:837210..839255+

>TCONS_00001610 ID=TCONS_00001610|Name=TCONS_00001610|organism=Clytia hemisphaerica|type=CDS|length=4245bp|location=Sequence derived from alignment at sc0000011:837210..839255+ (Clytia hemisphaerica)
GATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGA
AAATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAG
TATCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATC
ACGGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTT
TCCCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTG
ATTCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACA
TCAGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTC
ATCTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTC
ACCGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTT
GGCgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATAT
TTCTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGC
GCAATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGT
ATCATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGC
TGCCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAA
CGTCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATA
ATTGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGAT
ACCTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCG
ATGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAA
AATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGT
ATCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCA
CGGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTT
CCCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGA
TTCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACAT
CAGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCA
TCTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCA
CCGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTG
GCgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATT
TCTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCG
CAATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTA
TCATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCT
GCCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAAC
GTCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAA
TTGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATA
CCTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCGA
TGCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAAA
ATAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGTA
TCAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCAC
GGAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTTC
CCTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGAT
TCTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACATC
AGCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCAT
CTCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCAC
CGAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTGG
CgactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATTT
CTATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGC
AATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTAT
CATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCTG
CCAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACG
TCTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAAT
TGAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATAC
CTAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCGAT
GCAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAAAA
TAATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGTAT
CAAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCACG
GAAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTTCC
CTCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGATT
CTTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACATCA
GCCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCATC
TCCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCACC
GAAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTGGC
gactttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATTTC
TATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGCA
ATGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTATC
ATTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCTGC
CAGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACGT
CTACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAATT
GAAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATACC
TAATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACCGATG
CAGTCAAGATGACAAGTGCAGACATAAACCTAACCTTCTTCACAGAAAAT
AATGGATCAAGGTCAGAACGAACATTTAGAAAAAGTCAAGTCACAGTATC
AAGACTTTCTACGGTATTTAAGatcGACCAAGCGTCACTATTCATCACGG
AAGAGTTCAGCGGACCATCTGAGTTCCCAGACTCATCAGGAAATTTTCCC
TCTCTTGACAACGTTAGGGTCGAAACAGTGTACGAAGTAGAAGGTGATTC
TTTGACGATTCGTCCAATACCAAGCACGCCAAATACGCCAAGCACATCAG
CCTATGAAATCCCATCGTCATCTTCAGATCGACAAGGATCATCCTCATCT
CCAGAATTTGGCGCATTTAGAAGATACAATTTGCCTGGACCGGCTCACCG
AAAAAGAGCAAGAACTTCTCAAGATTATTTATTGAAGATCTTTCTTGGCg
actttgaaggaaaaaaaatagTATCAACCAACAGAATGCAACATATTTCT
ATCAACGCATCAAATTCAAACGTTAACGCAATAACCGAAATGGCGCGCAA
TGTGTTTCAAATCGATGATTTGGTACTGGCCAGTGCAAGTGGATGTATCA
TTGAAGACACGGAGGTTACAAGAGATTTCACTTTCTGGAGATCGGCTGCC
AGGAAAATTTACGCAGTACAGGAGGAACAATTTCAGAGACAGCCAACGTC
TACAGCCCAGAGAGCAAGTTCTGATGACAACGCCAATCGAGAAATAATTG
AAAAGCTAGATTCAATGGAGCGTACCATCGAGCGAAATTCTCTGATACCT
AATATTCGAAACATCAGTGGACTTGAAAACGCCATCTGGTCAACC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000839	XLOC_000839	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001610-protein	TCONS_00001610-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000011	supercontig	sc0000011:837210..839255 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	12.3282	8.82007	4.18065	6.13159	0.697329	9.08608	0	0.563401	0.103587	0.0660479	0	0	0	0	0	0	0	0	0	0	0.0594242	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001610 vs. Swiss-Prot (Human)

BLAST of TCONS_00001610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001610 (transcript) - C. hemisphaerica