TCONS_00001604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001604
Unique NameTCONS_00001604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001604 ID=TCONS_00001604|Name=TCONS_00001604|organism=Clytia hemisphaerica|type=transcript|length=1326bp
CAGAtccaataaaaataaaaacagataaAGTCCTAATAAATATACTGTAT
TTGACATCAAAATGAAATTGAATATTGATGGGCTGCTGGTTCTCTTTCCA
TATGACTACATATATCCGGAGCAGTATTCATATATGTTTGAGCTGAAGAA
ATCTTTGGATGCTAAGGGACATTGTTTATTGGAAATGCCTTCAGGAACAG
GCAAAACTGTTTCCCTGTTATCCTTGATTGTTGCTTATCTAAGGGAAAAG
CCTCAGCATCTTAGTAAATTGATTTATTGTTCCCGCACAGTTCCTGAACT
TGAAAAGGTAttagaagaattgaaaaaattaatggaaTACTATGAGAAAG
AGACTGGAGAACCTTTGAAAATGCTGGGCTTGGCTTTGAGTTCTCGTAAA
AACTTATGCATTAAACCTGAGGTTGCCTCTCTAAAAGAAGGTAAAAAAGT
TGATGGTATGTGTCATGCGTTAACTGCTTCATATGTTCGTgcaaaacatc
aaaatcaacCTGGTATCCCAGTGTGCTCATTTTTTGAGGATTTCGATGCT
AAAGGAAGAGAAGAGCCACTTCCATATGGTATATATAATCTTGAAGATCT
CAAATCTTATGGACAGAAAATGGGATGGTGTCCATATTTCCTTGCAAGAT
ATGCAATGTCCCATGCAAACATAGTTGTTTACAGCTATCATTATCTTTTG
GACCCAAAAATTGCAGAACTTGTTTCAAAAGACATCCCTCGTTCATGTGC
TGTTGTTTTTGATGAAGCTCACAATATAGACAATGTGTGTATCGAATCAA
TGACGTGCCATATAACCAGGAGGGCTCTAGATAAATGCCACAACAACATA
GAAACCCTTACAGAAAATATAAATAGGTTAAAGAACCAAGATGCAGATAG
ACTTCGCACAGAGTATGATAGATTAGTGCAAGGTTTACAAGATGCAAGAG
TAGCAAGAGATACAGATGTCCAGCTGGCCAATCCAGttttacCAGATGAa
gttttggaagAGGCTGTACCTGGAAATATCAGACAGGCCGAACATTTTGT
TGCATTTATGAGAAGGTTCATTGAGTATTTAAAGaCAAGACTAAGAGTAC
AACACGTAGTATCAGAGACACCGCCATCTTTTCTCCAACACATCAATCAA
CAAGTTTGCATTGATCGGAAACCTCTCAGgttttgtgCAGAGAGGTTACG
CTCCCTTCTCCAGACATTAGAAATCACAGATATAGCAGACTTTGGTGGAC
TTGGTCTAGTAGCTGGATTCGCAACACTCGTCAGCACTTATTCCAAAGGA
TTTGTAATAATTATTGAACCATTTGA
Run BLAST on NCBI

transcript from alignment at sc0000011:786846..795005+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001604 ID=TCONS_00001604|Name=TCONS_00001604|organism=Clytia hemisphaerica|type=transcript|length=8160bp|location=Sequence derived from alignment at sc0000011:786846..795005+ (Clytia hemisphaerica)
CAGAtccaataaaaataaaaacagataaAGTCCTAATAAATATACTGTAT TTGACATCAAAATGAAGTAAGTTCTTtatatttattataaacatagtttt ttttaattttggagatataaacaaaatttttaacatttttgaaactTGGT AATTCTTTGAAGTGTTTTAAGTATGAGAAGTTTTACTCTTAGATTGAATA TTGATGGGCTGCTGGTTCTCTTTCCATATGACTACATATATCCGGAGCAG TATTCATATATGTTTGAGCTGAAGAAATCTTTGGATGCTAAGGTTTGTAT CAACTTGTATTTGCATCCGAAAGAGTTACGTGaataagatgaaaaaaatt caaagatctTGAAGTAATCTAGCCATTTCCATTAAACAAGCATTTATGAc acagggatttttctaagaacTTTCAGCTGGGGCCGTTTTTGTAAACTTAG ATTGAATTTTTAATATACCGTTCAGGCAGGGAACCTGCTCAGCAAAGCTG CACATTGATGAAGCTGGGGGTCTTGTGGGTGTTCAGAGGGCGAAGCTCCC AAAAACTCTTGAATATGTAGATAAATTAGTTATTGTTGcttataaacaac aataaaggTTAATTTCGCTatagaaaaaatctcatttattttggattgat tttcaaaaactcaATCTTAGATTGGGTATTTTGGTCGGTATACAGACATA AAagagtgcttagaaaaatccctgtgACAAGATTTGaatttggatgaaaa aataCTTATAGTTGGATTGCACTTTTCTGGTGCTCTGCTTTGATTActga tttatttgtttttggacctaccccggtggaggtcctataaattaacctat gtttgttcgtccgttcgtctgtccgttcgtctgttaccaacttttctcag gattgaatcataggaatcttttgatttttggtataaaggtgcaaaatggt ggtggcgaaaatgtgacggagcccgatttttgaaaaaaaaatttttggag caaatttggtccaaaaaacggctaaaaaacgggttttttgtactttgtga aaaattggatcattaattttttctgaatttttgcatgaaagtagggtacc atcataggtaaaagatggctcgagcagatttttgcaaaaagttttgttgg ctcaaaaaacgcatgtttatctataagaatcactattaataagcatacat caatgttcttattcaaattactcaatttttttatgagatagatgttcttt ttgctcacgagggcttacttttgaaaaatatgtgtgtttaaagatgcaat tttggttgcttggcgtgtttttatagaaaaactggccaaatccgatattt tttataagcacattatcaattacttaggtattagcttttctcgagattag ctctttcattctttatgattttttgcacaaagatgcataactataaaccc ttgaatgtgtcgaagcccgatttttggagaaaaaaaattttggtcaaatt tgagccaaaaaacggctaaaaaacggggtttttggacttggtgaaaaatt cgatcattaattttttccaattttttgcatgaaagtagggtaccatcata ggtaaaagatggttcaagcagatttttgcaaaNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgttggctcaaaaaaacgc atgtttatctataagaatcactattaataagcatacatcaatgttcttag tcaaattactcaatttttttatgagatatttgttttttttgcccATGAGG Gctgaatatgtgtgtttagagacgaaattttggttgcttggcgtgttttt atagaaaagctggctaaattcgatatttttttataagcacattatcaatt aattaggtattggcttttctcgagattggctctttcattctttatgattt ttgcacaaagatgcataattataaaccctcaaatgtgacggaccctgata tttgaaaaaaaatgtttttgggcaaatttgggccaaaaaacggctaaaaa gggtttttggactttgtgaaatattggttcattgtttttttctgaatttt tgcatgaaagtaggtaaaagatggctcaagcagattttggtaaaaaaaga attttttagctcaaaaaacgcatgtttatctataagaatcgctaTTAATA AGGATACATCAATGTTCGTAGAGGCGTagtggtgtagtggttatcgtgct tgacttctgttcaggaggctcgagttcgatacccaccgtggcactacgat tcacttggcaagtgaatgctccttcgcccgggtcaacccatgccatgtga ggggaattgggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ncatctgcagggttgcaatgtctgcttgcgctgtgattcctactccaccg tgggtaggacccattccgatgcatcggagggcatatctatctatatctat catcaatgttcttagccaaagcaaattactcaattttttgatgagataga tgtatttcttgctcacgaagtcttgaatatgaaataatatttcaagggca tgaaattttggtttctaaacgttttttttataagaaacaaaaaacgacta attttaatagatcgtcactatttgtgttctgaatgattgtttaacggtca tgctcacgtagatatcaattatatgtgttaaatgcataaacAGGTAgttc cataaaagtatcacttgttgtttAAAGAATgtattatttctttcttttat tagGGACATTGTTTATTGGAAATGCCTTCAGGAACAGGCAAAACTGTTTC CCTGTTATCCTTGATTGTTGCTTATCTAAGGGTACTGTATTGTTTATATG TTTTATCTTATATCTTTGCCATTGGTATTTACTCTTTTATCTCATTGAAG TATACATTCCTAAATGACTAAACAAGGCTAtaaattgacttttattagtT TTTCTCAAATGAATGCAGACCTGAAATGAATAAGTTTTTCAATCGAAAAG AGTCACcattaattcaaatttttttcttctcccATTTGTAGGAAAAGCCT CAGCATCTTAGTAAATTGATTTATTGTTCCCGCACAGTTCCTGAACTTGA AAAGGTTAGAATAATTACTCTCAACATCAGAgttgcaacttttctgtttg ttAATGAAAATCCGTCCAGTTGAATTTTCTAACATGTAtggggccattca aaaagtatgtacgctcgaaaatggcaaattttgacTCCCCCTCCCTCTTG TACGTTTTAGTACGCTTTATGTGTACCCTCCCCCTTCAGCTTACGTACGC TTTTCATTTTTAGTACACCCCCCCTAACCAAAGTCGAAACTTGAAACTCT AGTAACAGTAGAATATGTAGGTATccaatcgtatttataacaaagtctca agaaattaaaagaatctataagaagaacaaaaataacaatctcaaaaaca attttttgatgtgaaaatattgcgtttttctctcaaaaaagacagtttag gaaaaattacaagcgtacgtacttctcctcaaggacccccctccccccac gTGCGCTTCCGTACGCTTTTGGGAGTACTCCACCTCCCCCCTCTccagcg tacgtactttttgaatggtccctatTTCCGTCCAACTAACAAGCAGAATT TTTCGTGAAATAAGATTCAAATTTTATACTCTCCGCTAAGATTATATTAA CCACAGCTGGTTGCAACACTGAACATGTATCCCTAATCACATGTCAAATG TTATGTTTTATGATAAAGTGTCTTTGTTGTTTAGGTAttagaagaattga aaaaattaatggaaTACTATGAGAAAGAGACTGGAGAACCTTTGAAAATG CTGGGCTTGGCTTTGAGTTCTCGTAAAAACTTATGCATTAAACCTGAGGT AACACATGATTAGTTGTTGCTTTCTTAGCATTTATTATTTCAACTTCATC AGGGCTGATTGAAGTGTGAATTCTAgtagaaaaataaatacaacATCAAA TAGGGTTTGTAGACTTGGTTCTTGTGTTTCAAGTAGATGATTGCTAGAAA TACAAGAGCTCTTTTTTATGGTGTAAAGGGATGGCATGCCACTCATGCTG AGAAAGCAGAATTAACAATGGAATTTTCTGTATCTTTTGCTTGCATATCG CAAGTGGGAGAAAGTTGTTCTTTTCCTTGTTTATAAACACAATGTAAAAA AATGGTAAATGGTCTTTAATAATGAGATTTTGTTATACTTTAGGTTGCCT CTCTAAAAGAAGGTAAAAAAGTTGATGGTATGTGTCATGCGTTAACTGCT TCATATGTTCGTgcaaaacatcaaaatcaacCTGGTATCCCAGTGTGCTC ATTTTTTGAGGTAAAtctttttatgaaataaaagaaaatatagaaataac tTTCCCCAGAGAATAGACAAATTAACAAACTATGTAATAATAGCTGCATT TCTTAAACTTAGAAACAAACCCGAAAcaaacaacaatttttgaaaaggaa agaGAAACATTGTGGTATTcatatttagtttttttttgctgtagCTTTCA ATATTCACATTTAAAATGTATTGAAAAAAGGAGATGTTATTCgttaaaat ctttttatctAGGATTTCGATGCTAAAGGAAGAGAAGAGCCACTTCCATA TGGTATATATAATCTTGTGAGTTATGTTAATTATAATTGATTGTTTAAAA GAATTTTACTGTAACCTGTGTACTTTATTTGGCAcagaaatgatgaaaaa tgtCATATCTGTCATGATCTGCAGAATTTTTGGTGTAAAGCATATTTACT AAattaataatttgaaaatatttttcatacttTCTTCTCACAGGAAGATC TCAAATCTTATGGACAGAAAATGGGATGGTGTCCATATTTCCTTGCAAGA TATGCAGTATGGTTCTAACTTGTTTTTATCACATTTTCATTCATGCTACA TTCatcatattttgaaattttcaaagattgtttccaGTACTTTTCTTTCA AGCTTGTAATAAAACCATAGTGACATCAGGTGACTCCAGTAAATATTTCA TGTCGAAAGTTacagaaaactttttgaaaaaatgaatttctatTTTGCTT ATGTTTCTAGATGTCCCATGCAAACATAGTTGTTTACAGCTATCATTATC TTTTGGACCCAAAAATTGCAGAACTTGTTTCAAAAGACATCCCTCGTTCA TGTGCTGTTGTTTTTGATGAAGCTCACAATATAGGTAAGTTTATAAAACA GTTTTAGGTTTTCCAGTTGAAATTAACTTAGCTCTTGTCATGAGCCAAAC TTTCCATCTGTATGATTTAGATAGACTTTTGAACTCAAATTTTACTGGAC AAAAAAAACCATCTTCACACCATGTTAATTTTCACTTGTCTTCTGCTTAG ACAATGTGTGTATCGAATCAATGACGTGCCATATAACCAGGAGGGCTCTA GATAAATGCCACAACAACATAGAAACCCTTACAGAAAATATAAATAGGTA TACATGTCAagattcttttaaattttcatgattttttaagTTTCTAAAAC CTGTATACAACAAAGTTGTTCaaaagggaaaaatatttttttagtttttt tataattcttttgtcatttttagtaACCTTTCAAAGTAAACATGAATCTT AAATCGTTTTCTAGGTTAAAGAACCAAGATGCAGATAGACTTCGCACAGA GTATGATAGATTAGTGCAAGGTAAGACCAtgatgaattttcttttttaaa ctaCCGAAACTACTTTCATGGAGTGGTTATCACCCTTGACCTTCATGGAT GAGGTCAGAGTTCAATTCCCACTTGGCTTTCAATGTACCTTTGCCCGGTT TGCCCTGCAAACCAACATCACATGAAGAGAACTCTGGTACAGTTTTTGTG TTCAGTGGTTACCGTACAATTATTTTTTCAGTGTGGGCACAATGTTTATT TGTCTGGTTCAGTATTCTCATTGAAACACATCAGTTAATGTGTGTTACTG ATGTATCTGAAAACACCATGATTTAAGTATCCTAGGGATGAACAATTTTA TGGGAAAGCGTCCAGTCTGAATTCTTTGTAAGGGTAATATCTCACATTCA TAGCTACCCATCACTAAATTcttgaaatgaatttttatgaaaaggtttac ATTGCTAATAaaagtttgatttgatttttattttgttatatttaGTTTTA TATTTTGTAGGTTTACAAGATGCAAGAGTAGCAAGAGATACAGATGTCCA GCTGGCCAATCCAGGTATTATGAGTCGTTAGAAATTACCCTCATTCCCTC ATTTAATGATTGCTAAAGCATGGGTGagataccttattggaactaatctT TTGGGGGAACTAATATTTGCGGTCgaaaagaaaatcagaaaaattgcatt tctccAGATTTTGCAGGTTTTAATTTTCgaggttttgcccttttttggac aaatgtcttttattttcttagggatttgggatttttcaaatctttcaaaa aaaaatggaaaaaattgtatttcagaggctcaaatcataaaaatgctaga attaattcccgcgaaaattagttccaataaagTAGTCGAAAATTTAAGAT GTATAACAGTATAATATAAAGCATTCAAAATATGTTGTtgacttgttttt attcaatcgttgccaaagttttaattttctttatattcttatcaagattt tgttttttgttttagttttacCAGATGAagttttggaaggtaaaaatttA AAAGCAATTCATCATTTTAACGTGttgatcaaaaacatcaaagtaGATAA AAGCTGTCTAGATATTATATCAACACATACGTGCATATCTTATAGAGGCT GTACCTGGAAATATCAGACAGGCCGAACATTTTGTTGCATTTATGAGAAG GTTCATTGAGTATTTAAAGGTATGTGGTAAAACTCAGCTCTGTCCTTTca aattcagggggtaccctATTACTACATTTTAACTATGATGATATAACTCT GGATTTTCGGGAAAACAGTGAACACAAAAACTTACAGTTATTTAGCTAGA AAGTTAAATTCAGAAAATTGAACAATTTGATAGGACATCAAAAtctgtct ttgttttttcagaCAAGACTAAGAGTACAACACGTAGTATCAGAGACACC GCCATCTTTTCTCCAACACATCAATCAACAAGTTTGCATTGATCGGAAAC CTCTCAGGTAATATGAGTGGTGAGTGGGctaagaaaaaatttggaaagat AAAGCAAACCACTTATAAGGAAAAGGGAAAACTTAGAATCTCTTGTTGTA TTTCTTAGTAGCCATAAAAATTAACGTTTGggccattttgaaatattttc aatgaaaattgggCTATTAATCCCAAATAACCCTACCGTTTTATTAAATA TTCACAAATATTTACTTCCAACACAAATTTTGTTacctttttttaggttt tgtgCAGAGAGGTTACGCTCCCTTCTCCAGACATTAGAAATCACAGATAT AGCAGACTTTGGTGGACTTGGTCTAGTAGCTGGATTCGCAACACTCGTCA GCACTTATTCCAAAGGTTACTCTTTTTAccttaaaatttaatttctacTC ATGTTTTACATTGTGTACTTCATTTTAATACAAGTTGattattataatta ttgatttgtaattgttttttcatttgccGCAGGATTTGTAATAATTATTG AACCATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000836XLOC_000836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001604-exon-sc0000011-1491911889:786846..786911TCONS_00001604-exon-sc0000011-1491911889:786846..786911Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:786846..786911TCONS_00001604-exon-sc0000011-1510915933:786846..786911Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:786846..786911TCONS_00001604-exon-sc0000011-1575043694:786846..786911Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:787038..787137TCONS_00001604-exon-sc0000011-1491911889:787038..787137Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:787038..787137TCONS_00001604-exon-sc0000011-1510915933:787038..787137Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:787038..787137TCONS_00001604-exon-sc0000011-1575043694:787038..787137Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:790049..790126TCONS_00001604-exon-sc0000011-1491911889:790049..790126Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:790049..790126TCONS_00001604-exon-sc0000011-1510915933:790049..790126Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:790049..790126TCONS_00001604-exon-sc0000011-1575043694:790049..790126Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:790337..790399TCONS_00001604-exon-sc0000011-1491911889:790337..790399Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:790337..790399TCONS_00001604-exon-sc0000011-1510915933:790337..790399Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:790337..790399TCONS_00001604-exon-sc0000011-1575043694:790337..790399Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:791080..791193TCONS_00001604-exon-sc0000011-1491911889:791080..791193Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:791080..791193TCONS_00001604-exon-sc0000011-1510915933:791080..791193Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:791080..791193TCONS_00001604-exon-sc0000011-1575043694:791080..791193Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:791539..791655TCONS_00001604-exon-sc0000011-1491911889:791539..791655Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:791539..791655TCONS_00001604-exon-sc0000011-1510915933:791539..791655Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:791539..791655TCONS_00001604-exon-sc0000011-1575043694:791539..791655Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:791908..791961TCONS_00001604-exon-sc0000011-1491911889:791908..791961Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:791908..791961TCONS_00001604-exon-sc0000011-1510915933:791908..791961Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:791908..791961TCONS_00001604-exon-sc0000011-1575043694:791908..791961Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792139..792201TCONS_00001604-exon-sc0000011-1491911889:792139..792201Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792139..792201TCONS_00001604-exon-sc0000011-1510915933:792139..792201Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792139..792201TCONS_00001604-exon-sc0000011-1575043694:792139..792201Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792406..792529TCONS_00001604-exon-sc0000011-1491911889:792406..792529Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792406..792529TCONS_00001604-exon-sc0000011-1510915933:792406..792529Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792406..792529TCONS_00001604-exon-sc0000011-1575043694:792406..792529Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792696..792792TCONS_00001604-exon-sc0000011-1491911889:792696..792792Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792696..792792TCONS_00001604-exon-sc0000011-1510915933:792696..792792Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792696..792792TCONS_00001604-exon-sc0000011-1575043694:792696..792792Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792960..793015TCONS_00001604-exon-sc0000011-1491911889:792960..793015Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792960..793015TCONS_00001604-exon-sc0000011-1510915933:792960..793015Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792960..793015TCONS_00001604-exon-sc0000011-1575043694:792960..793015Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:793506..793559TCONS_00001604-exon-sc0000011-1491911889:793506..793559Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:793506..793559TCONS_00001604-exon-sc0000011-1510915933:793506..793559Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:793506..793559TCONS_00001604-exon-sc0000011-1575043694:793506..793559Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794011..794034TCONS_00001604-exon-sc0000011-1491911889:794011..794034Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794011..794034TCONS_00001604-exon-sc0000011-1510915933:794011..794034Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794011..794034TCONS_00001604-exon-sc0000011-1575043694:794011..794034Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794141..794214TCONS_00001604-exon-sc0000011-1491911889:794141..794214Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794141..794214TCONS_00001604-exon-sc0000011-1510915933:794141..794214Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794141..794214TCONS_00001604-exon-sc0000011-1575043694:794141..794214Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794408..794502TCONS_00001604-exon-sc0000011-1491911889:794408..794502Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794408..794502TCONS_00001604-exon-sc0000011-1510915933:794408..794502Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794408..794502TCONS_00001604-exon-sc0000011-1575043694:794408..794502Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794742..794860TCONS_00001604-exon-sc0000011-1491911889:794742..794860Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794742..794860TCONS_00001604-exon-sc0000011-1510915933:794742..794860Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794742..794860TCONS_00001604-exon-sc0000011-1575043694:794742..794860Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794978..795005TCONS_00001604-exon-sc0000011-1491911889:794978..795005Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794978..795005TCONS_00001604-exon-sc0000011-1510915933:794978..795005Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794978..795005TCONS_00001604-exon-sc0000011-1575043694:794978..795005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:786846..795005 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05783 3.61044 3.84746 5.7454 0 2.18286 0 1.7669e-08 3.44958e-07 0.642304 0.223245 2.05973 1.35095 0 2.75953 2.22861 4.0024 4.30775 0 0.249238 3.18108 1.12954 0 0 0 9.69382e-07 0 0 0.112034 0.617795
Blast
BLAST of TCONS_00001604 vs. Swiss-Prot (Human)
Match: ERCC2 (TFIIH basal transcription factor complex helicase XPD subunit OS=Homo sapiens GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0
Identity = 296/421 (70.31%), Postives = 355/421 (84.32%), Query Frame = 2
Query:   62 MKLNIDGLLVLFPYDYIYPEQYSYMFELKKSLDAKGHCLLEMPSGTGKTVSLLSLIVAYLREKPQHLSKLIYCSRTVPXXXXXXXXXXXXXXXXXXXTGEPLKMLGLALSSRKNLCIKPEVASLKEGKKVDGMCHALTASYVRAKHQNQPGIPVCSFFEDFDAKGREEPLPYGIYNLEDLKSYGQKMGWCPYFLARYAMSHANIVVYSYHYLLDPKIAELVSKDIPRSCAVVFDEAHNIDNVCIESMTCHITRRALDKCHNNIETLTENINRLKNQDADRLRTEYDRLVQGLQDARVARDTDVQLANPVLPDEVLEEAVPGNIRQAEHFVAFMRRFIEYLKTRLRVQHVVSETPPSFLQHINQQVCIDRKPLRFCAERLRSLLQTLEITDIADFGGLGLVAGFATLVSTYSKGFVIIIEPF 1324
            MKLN+DGLLV FPYDYIYPEQ+SYM ELK++LDAKGH +LEMPSGTGKTVSLL+LI+AY R  P  ++KLIYCSRTVPE+EKV+EEL+KL+ +YEK+ GE L  LGLALSSRKNLCI PEV  L+ GK VDG CH+LTASYVRA++Q+   +P C F+E+FDA GRE PLP GIYNL+DLK+ G++ GWCPYFLARY++ HAN+VVYSYHYLLDPKIA+LVSK++ R   VVFDEAHNIDNVCI+SM+ ++TRR LD+C  N+ETL + + R+K  D  RLR EY RLV+GL++A  AR+TD  LANPVLPDEVL+EAVPG+IR AEHF+ F+RR +EY+K RLRVQHVV E+PP+FL  + Q+VCI RKPLRFCAERLRSLL TLEITD+ADF  L L+A FATLVSTY+KGF IIIEPF
Sbjct:    1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPF 421          
The following BLAST results are available for this feature:
BLAST of TCONS_00001604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERCC20.000e+070.31TFIIH basal transcription factor complex helicase ... [more]
back to top