TCONS_00001604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001604
Unique NameTCONS_00001604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001604 ID=TCONS_00001604|Name=TCONS_00001604|organism=Clytia hemisphaerica|type=transcript|length=1326bp
CAGAtccaataaaaataaaaacagataaAGTCCTAATAAATATACTGTAT
TTGACATCAAAATGAAATTGAATATTGATGGGCTGCTGGTTCTCTTTCCA
TATGACTACATATATCCGGAGCAGTATTCATATATGTTTGAGCTGAAGAA
ATCTTTGGATGCTAAGGGACATTGTTTATTGGAAATGCCTTCAGGAACAG
GCAAAACTGTTTCCCTGTTATCCTTGATTGTTGCTTATCTAAGGGAAAAG
CCTCAGCATCTTAGTAAATTGATTTATTGTTCCCGCACAGTTCCTGAACT
TGAAAAGGTAttagaagaattgaaaaaattaatggaaTACTATGAGAAAG
AGACTGGAGAACCTTTGAAAATGCTGGGCTTGGCTTTGAGTTCTCGTAAA
AACTTATGCATTAAACCTGAGGTTGCCTCTCTAAAAGAAGGTAAAAAAGT
TGATGGTATGTGTCATGCGTTAACTGCTTCATATGTTCGTgcaaaacatc
aaaatcaacCTGGTATCCCAGTGTGCTCATTTTTTGAGGATTTCGATGCT
AAAGGAAGAGAAGAGCCACTTCCATATGGTATATATAATCTTGAAGATCT
CAAATCTTATGGACAGAAAATGGGATGGTGTCCATATTTCCTTGCAAGAT
ATGCAATGTCCCATGCAAACATAGTTGTTTACAGCTATCATTATCTTTTG
GACCCAAAAATTGCAGAACTTGTTTCAAAAGACATCCCTCGTTCATGTGC
TGTTGTTTTTGATGAAGCTCACAATATAGACAATGTGTGTATCGAATCAA
TGACGTGCCATATAACCAGGAGGGCTCTAGATAAATGCCACAACAACATA
GAAACCCTTACAGAAAATATAAATAGGTTAAAGAACCAAGATGCAGATAG
ACTTCGCACAGAGTATGATAGATTAGTGCAAGGTTTACAAGATGCAAGAG
TAGCAAGAGATACAGATGTCCAGCTGGCCAATCCAGttttacCAGATGAa
gttttggaagAGGCTGTACCTGGAAATATCAGACAGGCCGAACATTTTGT
TGCATTTATGAGAAGGTTCATTGAGTATTTAAAGaCAAGACTAAGAGTAC
AACACGTAGTATCAGAGACACCGCCATCTTTTCTCCAACACATCAATCAA
CAAGTTTGCATTGATCGGAAACCTCTCAGgttttgtgCAGAGAGGTTACG
CTCCCTTCTCCAGACATTAGAAATCACAGATATAGCAGACTTTGGTGGAC
TTGGTCTAGTAGCTGGATTCGCAACACTCGTCAGCACTTATTCCAAAGGA
TTTGTAATAATTATTGAACCATTTGA
Run BLAST on NCBI

transcript from alignment at sc0000011:786846..795005+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001604 ID=TCONS_00001604|Name=TCONS_00001604|organism=Clytia hemisphaerica|type=transcript|length=8160bp|location=Sequence derived from alignment at sc0000011:786846..795005+ (Clytia hemisphaerica)
CAGAtccaataaaaataaaaacagataaAGTCCTAATAAATATACTGTAT
TTGACATCAAAATGAAGTAAGTTCTTtatatttattataaacatagtttt
ttttaattttggagatataaacaaaatttttaacatttttgaaactTGGT
AATTCTTTGAAGTGTTTTAAGTATGAGAAGTTTTACTCTTAGATTGAATA
TTGATGGGCTGCTGGTTCTCTTTCCATATGACTACATATATCCGGAGCAG
TATTCATATATGTTTGAGCTGAAGAAATCTTTGGATGCTAAGGTTTGTAT
CAACTTGTATTTGCATCCGAAAGAGTTACGTGaataagatgaaaaaaatt
caaagatctTGAAGTAATCTAGCCATTTCCATTAAACAAGCATTTATGAc
acagggatttttctaagaacTTTCAGCTGGGGCCGTTTTTGTAAACTTAG
ATTGAATTTTTAATATACCGTTCAGGCAGGGAACCTGCTCAGCAAAGCTG
CACATTGATGAAGCTGGGGGTCTTGTGGGTGTTCAGAGGGCGAAGCTCCC
AAAAACTCTTGAATATGTAGATAAATTAGTTATTGTTGcttataaacaac
aataaaggTTAATTTCGCTatagaaaaaatctcatttattttggattgat
tttcaaaaactcaATCTTAGATTGGGTATTTTGGTCGGTATACAGACATA
AAagagtgcttagaaaaatccctgtgACAAGATTTGaatttggatgaaaa
aataCTTATAGTTGGATTGCACTTTTCTGGTGCTCTGCTTTGATTActga
tttatttgtttttggacctaccccggtggaggtcctataaattaacctat
gtttgttcgtccgttcgtctgtccgttcgtctgttaccaacttttctcag
gattgaatcataggaatcttttgatttttggtataaaggtgcaaaatggt
ggtggcgaaaatgtgacggagcccgatttttgaaaaaaaaatttttggag
caaatttggtccaaaaaacggctaaaaaacgggttttttgtactttgtga
aaaattggatcattaattttttctgaatttttgcatgaaagtagggtacc
atcataggtaaaagatggctcgagcagatttttgcaaaaagttttgttgg
ctcaaaaaacgcatgtttatctataagaatcactattaataagcatacat
caatgttcttattcaaattactcaatttttttatgagatagatgttcttt
ttgctcacgagggcttacttttgaaaaatatgtgtgtttaaagatgcaat
tttggttgcttggcgtgtttttatagaaaaactggccaaatccgatattt
tttataagcacattatcaattacttaggtattagcttttctcgagattag
ctctttcattctttatgattttttgcacaaagatgcataactataaaccc
ttgaatgtgtcgaagcccgatttttggagaaaaaaaattttggtcaaatt
tgagccaaaaaacggctaaaaaacggggtttttggacttggtgaaaaatt
cgatcattaattttttccaattttttgcatgaaagtagggtaccatcata
ggtaaaagatggttcaagcagatttttgcaaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgttggctcaaaaaaacgc
atgtttatctataagaatcactattaataagcatacatcaatgttcttag
tcaaattactcaatttttttatgagatatttgttttttttgcccATGAGG
Gctgaatatgtgtgtttagagacgaaattttggttgcttggcgtgttttt
atagaaaagctggctaaattcgatatttttttataagcacattatcaatt
aattaggtattggcttttctcgagattggctctttcattctttatgattt
ttgcacaaagatgcataattataaaccctcaaatgtgacggaccctgata
tttgaaaaaaaatgtttttgggcaaatttgggccaaaaaacggctaaaaa
gggtttttggactttgtgaaatattggttcattgtttttttctgaatttt
tgcatgaaagtaggtaaaagatggctcaagcagattttggtaaaaaaaga
attttttagctcaaaaaacgcatgtttatctataagaatcgctaTTAATA
AGGATACATCAATGTTCGTAGAGGCGTagtggtgtagtggttatcgtgct
tgacttctgttcaggaggctcgagttcgatacccaccgtggcactacgat
tcacttggcaagtgaatgctccttcgcccgggtcaacccatgccatgtga
ggggaattgggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncatctgcagggttgcaatgtctgcttgcgctgtgattcctactccaccg
tgggtaggacccattccgatgcatcggagggcatatctatctatatctat
catcaatgttcttagccaaagcaaattactcaattttttgatgagataga
tgtatttcttgctcacgaagtcttgaatatgaaataatatttcaagggca
tgaaattttggtttctaaacgttttttttataagaaacaaaaaacgacta
attttaatagatcgtcactatttgtgttctgaatgattgtttaacggtca
tgctcacgtagatatcaattatatgtgttaaatgcataaacAGGTAgttc
cataaaagtatcacttgttgtttAAAGAATgtattatttctttcttttat
tagGGACATTGTTTATTGGAAATGCCTTCAGGAACAGGCAAAACTGTTTC
CCTGTTATCCTTGATTGTTGCTTATCTAAGGGTACTGTATTGTTTATATG
TTTTATCTTATATCTTTGCCATTGGTATTTACTCTTTTATCTCATTGAAG
TATACATTCCTAAATGACTAAACAAGGCTAtaaattgacttttattagtT
TTTCTCAAATGAATGCAGACCTGAAATGAATAAGTTTTTCAATCGAAAAG
AGTCACcattaattcaaatttttttcttctcccATTTGTAGGAAAAGCCT
CAGCATCTTAGTAAATTGATTTATTGTTCCCGCACAGTTCCTGAACTTGA
AAAGGTTAGAATAATTACTCTCAACATCAGAgttgcaacttttctgtttg
ttAATGAAAATCCGTCCAGTTGAATTTTCTAACATGTAtggggccattca
aaaagtatgtacgctcgaaaatggcaaattttgacTCCCCCTCCCTCTTG
TACGTTTTAGTACGCTTTATGTGTACCCTCCCCCTTCAGCTTACGTACGC
TTTTCATTTTTAGTACACCCCCCCTAACCAAAGTCGAAACTTGAAACTCT
AGTAACAGTAGAATATGTAGGTATccaatcgtatttataacaaagtctca
agaaattaaaagaatctataagaagaacaaaaataacaatctcaaaaaca
attttttgatgtgaaaatattgcgtttttctctcaaaaaagacagtttag
gaaaaattacaagcgtacgtacttctcctcaaggacccccctccccccac
gTGCGCTTCCGTACGCTTTTGGGAGTACTCCACCTCCCCCCTCTccagcg
tacgtactttttgaatggtccctatTTCCGTCCAACTAACAAGCAGAATT
TTTCGTGAAATAAGATTCAAATTTTATACTCTCCGCTAAGATTATATTAA
CCACAGCTGGTTGCAACACTGAACATGTATCCCTAATCACATGTCAAATG
TTATGTTTTATGATAAAGTGTCTTTGTTGTTTAGGTAttagaagaattga
aaaaattaatggaaTACTATGAGAAAGAGACTGGAGAACCTTTGAAAATG
CTGGGCTTGGCTTTGAGTTCTCGTAAAAACTTATGCATTAAACCTGAGGT
AACACATGATTAGTTGTTGCTTTCTTAGCATTTATTATTTCAACTTCATC
AGGGCTGATTGAAGTGTGAATTCTAgtagaaaaataaatacaacATCAAA
TAGGGTTTGTAGACTTGGTTCTTGTGTTTCAAGTAGATGATTGCTAGAAA
TACAAGAGCTCTTTTTTATGGTGTAAAGGGATGGCATGCCACTCATGCTG
AGAAAGCAGAATTAACAATGGAATTTTCTGTATCTTTTGCTTGCATATCG
CAAGTGGGAGAAAGTTGTTCTTTTCCTTGTTTATAAACACAATGTAAAAA
AATGGTAAATGGTCTTTAATAATGAGATTTTGTTATACTTTAGGTTGCCT
CTCTAAAAGAAGGTAAAAAAGTTGATGGTATGTGTCATGCGTTAACTGCT
TCATATGTTCGTgcaaaacatcaaaatcaacCTGGTATCCCAGTGTGCTC
ATTTTTTGAGGTAAAtctttttatgaaataaaagaaaatatagaaataac
tTTCCCCAGAGAATAGACAAATTAACAAACTATGTAATAATAGCTGCATT
TCTTAAACTTAGAAACAAACCCGAAAcaaacaacaatttttgaaaaggaa
agaGAAACATTGTGGTATTcatatttagtttttttttgctgtagCTTTCA
ATATTCACATTTAAAATGTATTGAAAAAAGGAGATGTTATTCgttaaaat
ctttttatctAGGATTTCGATGCTAAAGGAAGAGAAGAGCCACTTCCATA
TGGTATATATAATCTTGTGAGTTATGTTAATTATAATTGATTGTTTAAAA
GAATTTTACTGTAACCTGTGTACTTTATTTGGCAcagaaatgatgaaaaa
tgtCATATCTGTCATGATCTGCAGAATTTTTGGTGTAAAGCATATTTACT
AAattaataatttgaaaatatttttcatacttTCTTCTCACAGGAAGATC
TCAAATCTTATGGACAGAAAATGGGATGGTGTCCATATTTCCTTGCAAGA
TATGCAGTATGGTTCTAACTTGTTTTTATCACATTTTCATTCATGCTACA
TTCatcatattttgaaattttcaaagattgtttccaGTACTTTTCTTTCA
AGCTTGTAATAAAACCATAGTGACATCAGGTGACTCCAGTAAATATTTCA
TGTCGAAAGTTacagaaaactttttgaaaaaatgaatttctatTTTGCTT
ATGTTTCTAGATGTCCCATGCAAACATAGTTGTTTACAGCTATCATTATC
TTTTGGACCCAAAAATTGCAGAACTTGTTTCAAAAGACATCCCTCGTTCA
TGTGCTGTTGTTTTTGATGAAGCTCACAATATAGGTAAGTTTATAAAACA
GTTTTAGGTTTTCCAGTTGAAATTAACTTAGCTCTTGTCATGAGCCAAAC
TTTCCATCTGTATGATTTAGATAGACTTTTGAACTCAAATTTTACTGGAC
AAAAAAAACCATCTTCACACCATGTTAATTTTCACTTGTCTTCTGCTTAG
ACAATGTGTGTATCGAATCAATGACGTGCCATATAACCAGGAGGGCTCTA
GATAAATGCCACAACAACATAGAAACCCTTACAGAAAATATAAATAGGTA
TACATGTCAagattcttttaaattttcatgattttttaagTTTCTAAAAC
CTGTATACAACAAAGTTGTTCaaaagggaaaaatatttttttagtttttt
tataattcttttgtcatttttagtaACCTTTCAAAGTAAACATGAATCTT
AAATCGTTTTCTAGGTTAAAGAACCAAGATGCAGATAGACTTCGCACAGA
GTATGATAGATTAGTGCAAGGTAAGACCAtgatgaattttcttttttaaa
ctaCCGAAACTACTTTCATGGAGTGGTTATCACCCTTGACCTTCATGGAT
GAGGTCAGAGTTCAATTCCCACTTGGCTTTCAATGTACCTTTGCCCGGTT
TGCCCTGCAAACCAACATCACATGAAGAGAACTCTGGTACAGTTTTTGTG
TTCAGTGGTTACCGTACAATTATTTTTTCAGTGTGGGCACAATGTTTATT
TGTCTGGTTCAGTATTCTCATTGAAACACATCAGTTAATGTGTGTTACTG
ATGTATCTGAAAACACCATGATTTAAGTATCCTAGGGATGAACAATTTTA
TGGGAAAGCGTCCAGTCTGAATTCTTTGTAAGGGTAATATCTCACATTCA
TAGCTACCCATCACTAAATTcttgaaatgaatttttatgaaaaggtttac
ATTGCTAATAaaagtttgatttgatttttattttgttatatttaGTTTTA
TATTTTGTAGGTTTACAAGATGCAAGAGTAGCAAGAGATACAGATGTCCA
GCTGGCCAATCCAGGTATTATGAGTCGTTAGAAATTACCCTCATTCCCTC
ATTTAATGATTGCTAAAGCATGGGTGagataccttattggaactaatctT
TTGGGGGAACTAATATTTGCGGTCgaaaagaaaatcagaaaaattgcatt
tctccAGATTTTGCAGGTTTTAATTTTCgaggttttgcccttttttggac
aaatgtcttttattttcttagggatttgggatttttcaaatctttcaaaa
aaaaatggaaaaaattgtatttcagaggctcaaatcataaaaatgctaga
attaattcccgcgaaaattagttccaataaagTAGTCGAAAATTTAAGAT
GTATAACAGTATAATATAAAGCATTCAAAATATGTTGTtgacttgttttt
attcaatcgttgccaaagttttaattttctttatattcttatcaagattt
tgttttttgttttagttttacCAGATGAagttttggaaggtaaaaatttA
AAAGCAATTCATCATTTTAACGTGttgatcaaaaacatcaaagtaGATAA
AAGCTGTCTAGATATTATATCAACACATACGTGCATATCTTATAGAGGCT
GTACCTGGAAATATCAGACAGGCCGAACATTTTGTTGCATTTATGAGAAG
GTTCATTGAGTATTTAAAGGTATGTGGTAAAACTCAGCTCTGTCCTTTca
aattcagggggtaccctATTACTACATTTTAACTATGATGATATAACTCT
GGATTTTCGGGAAAACAGTGAACACAAAAACTTACAGTTATTTAGCTAGA
AAGTTAAATTCAGAAAATTGAACAATTTGATAGGACATCAAAAtctgtct
ttgttttttcagaCAAGACTAAGAGTACAACACGTAGTATCAGAGACACC
GCCATCTTTTCTCCAACACATCAATCAACAAGTTTGCATTGATCGGAAAC
CTCTCAGGTAATATGAGTGGTGAGTGGGctaagaaaaaatttggaaagat
AAAGCAAACCACTTATAAGGAAAAGGGAAAACTTAGAATCTCTTGTTGTA
TTTCTTAGTAGCCATAAAAATTAACGTTTGggccattttgaaatattttc
aatgaaaattgggCTATTAATCCCAAATAACCCTACCGTTTTATTAAATA
TTCACAAATATTTACTTCCAACACAAATTTTGTTacctttttttaggttt
tgtgCAGAGAGGTTACGCTCCCTTCTCCAGACATTAGAAATCACAGATAT
AGCAGACTTTGGTGGACTTGGTCTAGTAGCTGGATTCGCAACACTCGTCA
GCACTTATTCCAAAGGTTACTCTTTTTAccttaaaatttaatttctacTC
ATGTTTTACATTGTGTACTTCATTTTAATACAAGTTGattattataatta
ttgatttgtaattgttttttcatttgccGCAGGATTTGTAATAATTATTG
AACCATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000836XLOC_000836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001604-exon-sc0000011-1491911889:786846..786911TCONS_00001604-exon-sc0000011-1491911889:786846..786911Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:786846..786911TCONS_00001604-exon-sc0000011-1510915933:786846..786911Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:786846..786911TCONS_00001604-exon-sc0000011-1575043694:786846..786911Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:787038..787137TCONS_00001604-exon-sc0000011-1491911889:787038..787137Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:787038..787137TCONS_00001604-exon-sc0000011-1510915933:787038..787137Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:787038..787137TCONS_00001604-exon-sc0000011-1575043694:787038..787137Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:790049..790126TCONS_00001604-exon-sc0000011-1491911889:790049..790126Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:790049..790126TCONS_00001604-exon-sc0000011-1510915933:790049..790126Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:790049..790126TCONS_00001604-exon-sc0000011-1575043694:790049..790126Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:790337..790399TCONS_00001604-exon-sc0000011-1491911889:790337..790399Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:790337..790399TCONS_00001604-exon-sc0000011-1510915933:790337..790399Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:790337..790399TCONS_00001604-exon-sc0000011-1575043694:790337..790399Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:791080..791193TCONS_00001604-exon-sc0000011-1491911889:791080..791193Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:791080..791193TCONS_00001604-exon-sc0000011-1510915933:791080..791193Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:791080..791193TCONS_00001604-exon-sc0000011-1575043694:791080..791193Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:791539..791655TCONS_00001604-exon-sc0000011-1491911889:791539..791655Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:791539..791655TCONS_00001604-exon-sc0000011-1510915933:791539..791655Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:791539..791655TCONS_00001604-exon-sc0000011-1575043694:791539..791655Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:791908..791961TCONS_00001604-exon-sc0000011-1491911889:791908..791961Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:791908..791961TCONS_00001604-exon-sc0000011-1510915933:791908..791961Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:791908..791961TCONS_00001604-exon-sc0000011-1575043694:791908..791961Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792139..792201TCONS_00001604-exon-sc0000011-1491911889:792139..792201Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792139..792201TCONS_00001604-exon-sc0000011-1510915933:792139..792201Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792139..792201TCONS_00001604-exon-sc0000011-1575043694:792139..792201Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792406..792529TCONS_00001604-exon-sc0000011-1491911889:792406..792529Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792406..792529TCONS_00001604-exon-sc0000011-1510915933:792406..792529Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792406..792529TCONS_00001604-exon-sc0000011-1575043694:792406..792529Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792696..792792TCONS_00001604-exon-sc0000011-1491911889:792696..792792Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792696..792792TCONS_00001604-exon-sc0000011-1510915933:792696..792792Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792696..792792TCONS_00001604-exon-sc0000011-1575043694:792696..792792Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:792960..793015TCONS_00001604-exon-sc0000011-1491911889:792960..793015Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:792960..793015TCONS_00001604-exon-sc0000011-1510915933:792960..793015Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:792960..793015TCONS_00001604-exon-sc0000011-1575043694:792960..793015Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:793506..793559TCONS_00001604-exon-sc0000011-1491911889:793506..793559Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:793506..793559TCONS_00001604-exon-sc0000011-1510915933:793506..793559Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:793506..793559TCONS_00001604-exon-sc0000011-1575043694:793506..793559Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794011..794034TCONS_00001604-exon-sc0000011-1491911889:794011..794034Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794011..794034TCONS_00001604-exon-sc0000011-1510915933:794011..794034Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794011..794034TCONS_00001604-exon-sc0000011-1575043694:794011..794034Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794141..794214TCONS_00001604-exon-sc0000011-1491911889:794141..794214Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794141..794214TCONS_00001604-exon-sc0000011-1510915933:794141..794214Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794141..794214TCONS_00001604-exon-sc0000011-1575043694:794141..794214Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794408..794502TCONS_00001604-exon-sc0000011-1491911889:794408..794502Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794408..794502TCONS_00001604-exon-sc0000011-1510915933:794408..794502Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794408..794502TCONS_00001604-exon-sc0000011-1575043694:794408..794502Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794742..794860TCONS_00001604-exon-sc0000011-1491911889:794742..794860Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794742..794860TCONS_00001604-exon-sc0000011-1510915933:794742..794860Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794742..794860TCONS_00001604-exon-sc0000011-1575043694:794742..794860Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1491911889:794978..795005TCONS_00001604-exon-sc0000011-1491911889:794978..795005Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1510915933:794978..795005TCONS_00001604-exon-sc0000011-1510915933:794978..795005Clytia hemisphaericaexon
TCONS_00001604-exon-sc0000011-1575043694:794978..795005TCONS_00001604-exon-sc0000011-1575043694:794978..795005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:786846..795005 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05783	3.61044	3.84746	5.7454	0	2.18286	0	1.7669e-08	3.44958e-07	0.642304	0.223245	2.05973	1.35095	0	2.75953	2.22861	4.0024	4.30775	0	0.249238	3.18108	1.12954	0	0	0	9.69382e-07	0	0	0.112034	0.617795
Blast
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BLAST of TCONS_00001604 vs. Swiss-Prot (Human)
Match: ERCC2 (TFIIH basal transcription factor complex helicase XPD subunit OS=Homo sapiens GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0
Identity = 296/421 (70.31%), Postives = 355/421 (84.32%), Query Frame = 2 
Query:   62 MKLNIDGLLVLFPYDYIYPEQYSYMFELKKSLDAKGHCLLEMPSGTGKTVSLLSLIVAYLREKPQHLSKLIYCSRTVPXXXXXXXXXXXXXXXXXXXTGEPLKMLGLALSSRKNLCIKPEVASLKEGKKVDGMCHALTASYVRAKHQNQPGIPVCSFFEDFDAKGREEPLPYGIYNLEDLKSYGQKMGWCPYFLARYAMSHANIVVYSYHYLLDPKIAELVSKDIPRSCAVVFDEAHNIDNVCIESMTCHITRRALDKCHNNIETLTENINRLKNQDADRLRTEYDRLVQGLQDARVARDTDVQLANPVLPDEVLEEAVPGNIRQAEHFVAFMRRFIEYLKTRLRVQHVVSETPPSFLQHINQQVCIDRKPLRFCAERLRSLLQTLEITDIADFGGLGLVAGFATLVSTYSKGFVIIIEPF 1324
            MKLN+DGLLV FPYDYIYPEQ+SYM ELK++LDAKGH +LEMPSGTGKTVSLL+LI+AY R  P  ++KLIYCSRTVPE+EKV+EEL+KL+ +YEK+ GE L  LGLALSSRKNLCI PEV  L+ GK VDG CH+LTASYVRA++Q+   +P C F+E+FDA GRE PLP GIYNL+DLK+ G++ GWCPYFLARY++ HAN+VVYSYHYLLDPKIA+LVSK++ R   VVFDEAHNIDNVCI+SM+ ++TRR LD+C  N+ETL + + R+K  D  RLR EY RLV+GL++A  AR+TD  LANPVLPDEVL+EAVPG+IR AEHF+ F+RR +EY+K RLRVQHVV E+PP+FL  + Q+VCI RKPLRFCAERLRSLL TLEITD+ADF  L L+A FATLVSTY+KGF IIIEPF
Sbjct:    1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPF 421
The following BLAST results are available for this feature:
BLAST of TCONS_00001604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERCC20.000e+070.31TFIIH basal transcription factor complex helicase ... [more]
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