TCONS_00001603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001603
Unique NameTCONS_00001603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001603 ID=TCONS_00001603|Name=TCONS_00001603|organism=Clytia hemisphaerica|type=transcript|length=1119bp
GTGCAATGTAAAAAATGGCGGACATTTGAGGCATTGTTCCAATAACCTAG
AACCTTTACTCTAAATTAGGAGCAATCATTTTCTTTTAGGAGAATTCTAC
TTGCAGCATTCTTTTTTTGATAGAGTAAAATATCTACTTCCAGTCTAGTG
AAAAACCGTTCTGCAAATTACACATAATGAAATCGCACATGAGAatcaaa
acattcttttttCAAGATGGCCACCTCAAAAATGGATGTAAACACAGAAT
CTGttgagaaaaaaatggaaaatgaaaaattttcaggagatgAGGAAACG
CAAGGTTCGGAAGTCACAGtttcaagaaaaagaaagaaggaaaaagttga
aataatgGAAACAGATTCtgcagcaaaaaaaacaaattttccgCCAGTCG
CAATTGAAGAAGGGGTTGGCAAAACAGAATTCAGAAAAGTACCAGTTCCT
TCACACAGATATACACCCTTAAAAGAAAATTGGATGAAAATATTTACACC
TGTTGTGGAGCATTTAAAACTTCAAATTCGATTCAATTTAAAGAAAAGAG
TTGTTGAAATAAGGACATGTAAAGAAACAACAGATACAGGAGCAATTCAA
AAGGCTGAAGATTTTGTAAAAGCATTCACTCTTGGTTTTGAAGTTGATGA
TGCCTTGGCACTTCTAAGACTGGatgatttatttttggaaagttttgaaa
taaatgaTGTAAAACCATTGAAAGGAGATCATCTTTCAAGAGCTATAGGA
AGAGTTGCAGGGAAAGGTggtaaaacaaaatttacaatagaaaatgtaac
aaaaacaAGGATAGTACTGGCAGACTCcaaaatacACGTGCTTGGgtctt
ttcaaaatataaaaattgccAGAACAGCTATATGTAGTTTAATATTAGGA
AGTCCTCCTTCTAAAGTATATGGAAACATGCGAGCAGTTGCAGCACGATC
TGCAGAAAGATTTTAAAACCCACCAATGCTTTGTGGTTGGCCATCAACTA
TGAATCTATATTGCTTTTGTTTTTACTAAAGGCTATACAACAGATTAATC
TAATTTTGTAAATTGTATTTTTGTCGTTATAAATAtgtaaaaccaaaaaa
aaaacaagtaaaaCAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00001603-protein

>TCONS_00001603-protein ID=TCONS_00001603-protein|Name=TCONS_00001603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MATSKMDVNTESVEKKMENEKFSGDEETQGSEVTVSRKRKKEKVEIMETD
SAAKKTNFPPVAIEEGVGKTEFRKVPVPSHRYTPLKENWMKIFTPVVEHL
KLQIRFNLKKRVVEIRTCKETTDTGAIQKAEDFVKAFTLGFEVDDALALL
RLDDLFLESFEINDVKPLKGDHLSRAIGRVAGKGGKTKFTIENVTKTRIV
LADSKIHVLGSFQNIKIARTAICSLILGSPPSKVYGNMRAVAARSAERF
Run BLAST on NCBI

transcript from alignment at sc0000011:782140..786616+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001603 ID=TCONS_00001603|Name=TCONS_00001603|organism=Clytia hemisphaerica|type=transcript|length=4477bp|location=Sequence derived from alignment at sc0000011:782140..786616+ (Clytia hemisphaerica)
GTGCAATGTAAAAAATGGCGGACATTTGAGGCATTGTTCCAATAACCTAG
AACCTTTACTCTAAATTAGGAGCAATCATTTTCTTTTAGGAGAATTCTAC
TTGCAGCATTCTTTTTTTGATAGAGTAAAATATCTACTTCCAGTCTAGTG
AAAAACCGTTCTGCAAATTACACATAATGAAATCGCACATGAGAatcaaa
acattcttttttCAAGATGGCCACCTCAAAAATGGATGTAAACACAGAAT
CTGttgagaaaaaaatggaaaatgaaaaattttcaggagatgAGGAAACG
CAAGGTTCGGAAGTCACAGtttcaagaaaaagaaagaaggaaaaagttga
aataatgGAAACAGATTCtgcagcaaaaaaaacaaattttccgCCAGTCG
CAATTGAAGAAGGGGTAAGTTTTGGAGAGGGggtctttctttttgtttgc
cAACTGCCCTCCTGTCGACGCACTGAACTGATCAATGATCAAATGATCAA
TGGACCTACACTGAAAGATGCATATAATTATTAACATCTAactttttgtg
aaaaatcttttaatattttttactcGGGTGAGTTAAGGAAAGTCCAAAAC
ATTTTGCGTGACGCCAGCCGcttcctactgtttttaccaaGTCATGCATA
GCTCTAAAGAAGTGTATTAATGTGAGGATCTCGAAAAGTGCTgcgtcaaa
aatttaaaatgaccCTATCTCAAAATATTGGCTAAAAACTGACTTAAACA
TTATAAAATACTGTGAGAGtggagagtgggtaacttgcatcagtggaggc
taacatgcatagccctaaaatgaatgacctggctggtcattaaaataaac
tatattccgctcgcagctctactctaccatttttgttttgatttaacttt
gtattttaatgaccagacgggtcattcatttgagttgagggctatgcatg
caagttacccactctcacagTACATCGAATCggaaatgtaaaaataatgt
tttacagacttatatatatcataaaaattgaaataaaaaaatgatattgA
TAAATATCTGAGGTCTAATCTTGTCTAATCTTGTATATTATATTGTTTAG
GTTGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATAC
ACCCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATT
TAAAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGG
GTTTGACTTTTTTATCTACTTAACTGTCTACTTTTTTTACTGTTATTAAA
TGACCTTCAACCATTTTTATTTCACTCTATATATATTCTAACTTTGCTga
atgatgtgtttatctttgtaaatatgaaaaaatagcAGAATGGACTTTTG
CCCTTTTTCTCGATGTCTCAAAAAcggaaaattaccataatttttagatc
gcattagtcgacagaaaatgaccaaacaattgactgaacatgaagggtac
tatgatgtagtttctaacctgatgtgtaacctaattgttttttcgctgat
tttctcaaaaaaccgcAAGAgctgattattacgtaataatcgatgacaac
atcaaaactaaaaatttaatttctcaagaatggtttatccaattgtcttc
aaactttcaccaaagatgtatcttactaaagttgatcatttgaaaaaaaa
aatttcgaaattttgataaggtcagcagaaattagtgtaaaacaaaaaat
cctattttctgctgacgtcatcaaaatttcgaaaacattttttttcaaat
gatcgactttagtaagataaatctttggtaaaagtttttcaaatgatcga
ctttagtaagatacatctttgcagggctgcaaataaatatttttagtctc
tcggacatcatgtccgactgAAACACAATTCagtcggtcaaactcaaaat
tcagTCGGTCATTCTGTACTTTTTTTTGTGGATATTTAACATAATAGAAA
ACAAGACTTTACTATCACTTATTACATTTTTGAGCATATTTGCCCAAATA
GAGACGGTAATTAGTATTTAGAATTAAATGAGACAGGGTGTTTAGAGATA
GCAAAAAGTGTGATTCCGTTCGATAAGACATGaagcaatgaaaaatattt
cctttgaaCGATCAAAAAAGAGcagtttgtgtaatttacgatgtgcgatc
caacgatccacgatgcacgaataagttttcataatgctagctacaaacat
catataacaataacaaaaaaaataaaaatagaagaggaaataatttatca
taatcagaatgattaaaataacttatatcttctgtgtagaaaaaccaaaa
agtgatagcgagagaaagaaaatgtttgctGCATGCCTCACTcgtttttg
aaatgaaagaaaaagccttgacgtcatagaaaagttttggcgcgaaaaat
ttattaaaacacaaactcatttttgtacgtttattatttttttaagaaca
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaacattgtaaatttttgtttataaccctgtctcaatccaatgca
ttcggttggtttaatcggagaaacgttttCAATGGGTTATTGAATTTATT
CTATTATTCAATTCTTATATTGGAACAACTATTTTAGAATCAAAAGGTAA
TGTGATCCTTTTATCTCTTTTGCTCCTTTATAAGGTttgataatttgttt
ttttttcattcggacatcGTGAccaacacaaaagattttcagtcggtcaa
atggCTTTTCcagtcggacattgaccgatgaccgacgcttatttgcagcc
ctgtctttggtaaaagtttgaagacaattagataaaccattcttgagaaa
ttcaatttttagttttgatgacgtcatcaattattacgtaataatcagtt
tttgcggttttccGTGAAAATCACATCaagttagaaactacatcatagta
cccttcatgttcagtcatttgtttggtcattttctgttgACTAAtgcaat
ctaaaaattatggtaattttaagacatgccataacttacccgagtttCCT
AATTTAGTTAAATCTTTTCATTTAGACATGTAAAGAAACAACAGATACAG
GAGCAATTCAAAAGGCTGAAGATTTTGTAAAAGCATTCACTCTTGGTTTT
GAAGTTGATGTAAGTGAATTGCTTGACTAGGAAGATCTACATTATTTTCT
ATTGTCAGTTAtgattttaaatctttaaaaaaatttcttttcctttGATA
GGATGCCTTGGCACTTCTAAGACTGGatgatttatttttggaaagttttg
aaataaatgaTGGTAACTAATTTCtactttgaattttgttttgatgatat
tTTCATATATGCCGAGCTGTAATAATTATTGTTACTATATAAATGTTACT
GTtgaagaaattttccaaaggtGAGATTTGCATTAAGTTTTTTTGTATTG
CAATTGTTCTTTTTTCAGTAAAACCATTGAAAGGAGATCATCTTTCAAGA
GCTATAGGAAGAGTTGCAGGGAAAGGTggtaaaacaaaatttacaataga
aaatgtaacaaaaacaAGGATAGTACTGGCAGACTCGTAAGTATTTTTTT
GTCCTGAAGCAATTGGAAACTATATAGAATTTGTTTTCCATATAAATTTC
AGAATATAAGATTGTTTAATATAATGTTTtgtccttttctttttttagca
aaatacACGTGCTTGGgtcttttcaaaatataaaaattgccAGAACAGCT
ATATGTAGTTTAATATTAGGTAAGTTGATAATAATTATTGCCAaagtttt
ttattaatttcatcAATCATCTTTTTATTAATCATAAAACAGTCACTGTA
AAATGCTGATTCCAATATCTTGAAATAAATGACAACTTTACCCTCTTGAT
TCTTAGGAAGTCCTCCTTCTAAAGTATATGGAAACATGCGAGCAGTTGCA
GCACGATCTGCAGAAAGATTTTAAAACCCACCAATGCTTTGTGGTTGGCC
ATCAACTATGAATCTATATTGCTTTTGTTTTTACTAAAGGCTATACAACA
GATTAATCTAATTTTGTAAATTGTATTTTTGTCGTTATAAATAtgtaaaa
ccaaaaaaaaaacaagtaaaaCAGAAT

Coding sequence (CDS) from alignment at sc0000011:782140..786616+

>TCONS_00001603 ID=TCONS_00001603|Name=TCONS_00001603|organism=Clytia hemisphaerica|type=CDS|length=5250bp|location=Sequence derived from alignment at sc0000011:782140..786616+ (Clytia hemisphaerica)
ATGGCCACCTCAAAAATGGATGTAAACACAGAATCTGttgagaaaaaaat
ggaaaatgaaaaattttcaggagatgAGGAAACGCAAGGTTCGGAAGTCA
CAGtttcaagaaaaagaaagaaggaaaaagttgaaataatgGAAACAGAT
TCtgcagcaaaaaaaacaaattttccgCCAGTCGCAATTGAAGAAGGGGT
TGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATACAC
CCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATTTA
AAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGGAC
ATGTAAAGAAACAACAGATACAGGAGCAATTCAAAAGGCTGAAGATTTTG
TAAAAGCATTCACTCTTGGTTTTGAAGTTGATGATGCCTTGGCACTTCTA
AGACTGGatgatttatttttggaaagttttgaaataaatgaTGTAAAACC
ATTGAAAGGAGATCATCTTTCAAGAGCTATAGGAAGAGTTGCAGGGAAAG
GTggtaaaacaaaatttacaatagaaaatgtaacaaaaacaAGGATAGTA
CTGGCAGACTCcaaaatacACGTGCTTGGgtcttttcaaaatataaaaat
tgccAGAACAGCTATATGTAGTTTAATATTAGGAAGTCCTCCTTCTAAAG
TATATGGAAACATGCGAGCAGTTGCAGCACGATCTGCAGAAAGATTTTAA
ATGGCCACCTCAAAAATGGATGTAAACACAGAATCTGttgagaaaaaaat
ggaaaatgaaaaattttcaggagatgAGGAAACGCAAGGTTCGGAAGTCA
CAGtttcaagaaaaagaaagaaggaaaaagttgaaataatgGAAACAGAT
TCtgcagcaaaaaaaacaaattttccgCCAGTCGCAATTGAAGAAGGGGT
TGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATACAC
CCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATTTA
AAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGGAC
ATGTAAAGAAACAACAGATACAGGAGCAATTCAAAAGGCTGAAGATTTTG
TAAAAGCATTCACTCTTGGTTTTGAAGTTGATGATGCCTTGGCACTTCTA
AGACTGGatgatttatttttggaaagttttgaaataaatgaTGTAAAACC
ATTGAAAGGAGATCATCTTTCAAGAGCTATAGGAAGAGTTGCAGGGAAAG
GTggtaaaacaaaatttacaatagaaaatgtaacaaaaacaAGGATAGTA
CTGGCAGACTCcaaaatacACGTGCTTGGgtcttttcaaaatataaaaat
tgccAGAACAGCTATATGTAGTTTAATATTAGGAAGTCCTCCTTCTAAAG
TATATGGAAACATGCGAGCAGTTGCAGCACGATCTGCAGAAAGATTTTAA
ATGGCCACCTCAAAAATGGATGTAAACACAGAATCTGttgagaaaaaaat
ggaaaatgaaaaattttcaggagatgAGGAAACGCAAGGTTCGGAAGTCA
CAGtttcaagaaaaagaaagaaggaaaaagttgaaataatgGAAACAGAT
TCtgcagcaaaaaaaacaaattttccgCCAGTCGCAATTGAAGAAGGGGT
TGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATACAC
CCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATTTA
AAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGGAC
ATGTAAAGAAACAACAGATACAGGAGCAATTCAAAAGGCTGAAGATTTTG
TAAAAGCATTCACTCTTGGTTTTGAAGTTGATGATGCCTTGGCACTTCTA
AGACTGGatgatttatttttggaaagttttgaaataaatgaTGTAAAACC
ATTGAAAGGAGATCATCTTTCAAGAGCTATAGGAAGAGTTGCAGGGAAAG
GTggtaaaacaaaatttacaatagaaaatgtaacaaaaacaAGGATAGTA
CTGGCAGACTCcaaaatacACGTGCTTGGgtcttttcaaaatataaaaat
tgccAGAACAGCTATATGTAGTTTAATATTAGGAAGTCCTCCTTCTAAAG
TATATGGAAACATGCGAGCAGTTGCAGCACGATCTGCAGAAAGATTTTAA
ATGGCCACCTCAAAAATGGATGTAAACACAGAATCTGttgagaaaaaaat
ggaaaatgaaaaattttcaggagatgAGGAAACGCAAGGTTCGGAAGTCA
CAGtttcaagaaaaagaaagaaggaaaaagttgaaataatgGAAACAGAT
TCtgcagcaaaaaaaacaaattttccgCCAGTCGCAATTGAAGAAGGGGT
TGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATACAC
CCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATTTA
AAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGGAC
ATGTAAAGAAACAACAGATACAGGAGCAATTCAAAAGGCTGAAGATTTTG
TAAAAGCATTCACTCTTGGTTTTGAAGTTGATGATGCCTTGGCACTTCTA
AGACTGGatgatttatttttggaaagttttgaaataaatgaTGTAAAACC
ATTGAAAGGAGATCATCTTTCAAGAGCTATAGGAAGAGTTGCAGGGAAAG
GTggtaaaacaaaatttacaatagaaaatgtaacaaaaacaAGGATAGTA
CTGGCAGACTCcaaaatacACGTGCTTGGgtcttttcaaaatataaaaat
tgccAGAACAGCTATATGTAGTTTAATATTAGGAAGTCCTCCTTCTAAAG
TATATGGAAACATGCGAGCAGTTGCAGCACGATCTGCAGAAAGATTTTAA
ATGGCCACCTCAAAAATGGATGTAAACACAGAATCTGttgagaaaaaaat
ggaaaatgaaaaattttcaggagatgAGGAAACGCAAGGTTCGGAAGTCA
CAGtttcaagaaaaagaaagaaggaaaaagttgaaataatgGAAACAGAT
TCtgcagcaaaaaaaacaaattttccgCCAGTCGCAATTGAAGAAGGGGT
TGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATACAC
CCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATTTA
AAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGGAC
ATGTAAAGAAACAACAGATACAGGAGCAATTCAAAAGGCTGAAGATTTTG
TAAAAGCATTCACTCTTGGTTTTGAAGTTGATGATGCCTTGGCACTTCTA
AGACTGGatgatttatttttggaaagttttgaaataaatgaTGTAAAACC
ATTGAAAGGAGATCATCTTTCAAGAGCTATAGGAAGAGTTGCAGGGAAAG
GTggtaaaacaaaatttacaatagaaaatgtaacaaaaacaAGGATAGTA
CTGGCAGACTCcaaaatacACGTGCTTGGgtcttttcaaaatataaaaat
tgccAGAACAGCTATATGTAGTTTAATATTAGGAAGTCCTCCTTCTAAAG
TATATGGAAACATGCGAGCAGTTGCAGCACGATCTGCAGAAAGATTTTAA
ATGGCCACCTCAAAAATGGATGTAAACACAGAATCTGttgagaaaaaaat
ggaaaatgaaaaattttcaggagatgAGGAAACGCAAGGTTCGGAAGTCA
CAGtttcaagaaaaagaaagaaggaaaaagttgaaataatgGAAACAGAT
TCtgcagcaaaaaaaacaaattttccgCCAGTCGCAATTGAAGAAGGGGT
TGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATACAC
CCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATTTA
AAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGGAC
ATGTAAAGAAACAACAGATACAGGAGCAATTCAAAAGGCTGAAGATTTTG
TAAAAGCATTCACTCTTGGTTTTGAAGTTGATGATGCCTTGGCACTTCTA
AGACTGGatgatttatttttggaaagttttgaaataaatgaTGTAAAACC
ATTGAAAGGAGATCATCTTTCAAGAGCTATAGGAAGAGTTGCAGGGAAAG
GTggtaaaacaaaatttacaatagaaaatgtaacaaaaacaAGGATAGTA
CTGGCAGACTCcaaaatacACGTGCTTGGgtcttttcaaaatataaaaat
tgccAGAACAGCTATATGTAGTTTAATATTAGGAAGTCCTCCTTCTAAAG
TATATGGAAACATGCGAGCAGTTGCAGCACGATCTGCAGAAAGATTTTAA
ATGGCCACCTCAAAAATGGATGTAAACACAGAATCTGttgagaaaaaaat
ggaaaatgaaaaattttcaggagatgAGGAAACGCAAGGTTCGGAAGTCA
CAGtttcaagaaaaagaaagaaggaaaaagttgaaataatgGAAACAGAT
TCtgcagcaaaaaaaacaaattttccgCCAGTCGCAATTGAAGAAGGGGT
TGGCAAAACAGAATTCAGAAAAGTACCAGTTCCTTCACACAGATATACAC
CCTTAAAAGAAAATTGGATGAAAATATTTACACCTGTTGTGGAGCATTTA
AAACTTCAAATTCGATTCAATTTAAAGAAAAGAGTTGTTGAAATAAGGAC
ATGTAAAGAAACAACAGATACAGGAGCAATTCAAAAGGCTGAAGATTTTG
TAAAAGCATTCACTCTTGGTTTTGAAGTTGATGATGCCTTGGCACTTCTA
AGACTGGatgatttatttttggaaagttttgaaataaatgaTGTAAAACC
ATTGAAAGGAGATCATCTTTCAAGAGCTATAGGAAGAGTTGCAGGGAAAG
GTggtaaaacaaaatttacaatagaaaatgtaacaaaaacaAGGATAGTA
CTGGCAGACTCcaaaatacACGTGCTTGGgtcttttcaaaatataaaaat
tgccAGAACAGCTATATGTAGTTTAATATTAGGAAGTCCTCCTTCTAAAG
TATATGGAAACATGCGAGCAGTTGCAGCACGATCTGCAGAAAGATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000835XLOC_000835Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001603-proteinTCONS_00001603-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001603-exon-sc0000011-1491911889:782140..782553TCONS_00001603-exon-sc0000011-1491911889:782140..782553Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1510915933:782140..782553TCONS_00001603-exon-sc0000011-1510915933:782140..782553Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1575043694:782140..782553TCONS_00001603-exon-sc0000011-1575043694:782140..782553Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1491911889:783240..783389TCONS_00001603-exon-sc0000011-1491911889:783240..783389Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1510915933:783240..783389TCONS_00001603-exon-sc0000011-1510915933:783240..783389Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1575043694:783240..783389TCONS_00001603-exon-sc0000011-1575043694:783240..783389Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1491911889:785565..785648TCONS_00001603-exon-sc0000011-1491911889:785565..785648Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1510915933:785565..785648TCONS_00001603-exon-sc0000011-1510915933:785565..785648Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1575043694:785565..785648TCONS_00001603-exon-sc0000011-1575043694:785565..785648Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1491911889:785741..785801TCONS_00001603-exon-sc0000011-1491911889:785741..785801Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1510915933:785741..785801TCONS_00001603-exon-sc0000011-1510915933:785741..785801Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1575043694:785741..785801TCONS_00001603-exon-sc0000011-1575043694:785741..785801Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1491911889:785958..786075TCONS_00001603-exon-sc0000011-1491911889:785958..786075Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1510915933:785958..786075TCONS_00001603-exon-sc0000011-1510915933:785958..786075Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1575043694:785958..786075TCONS_00001603-exon-sc0000011-1575043694:785958..786075Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1491911889:786188..786258TCONS_00001603-exon-sc0000011-1491911889:786188..786258Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1510915933:786188..786258TCONS_00001603-exon-sc0000011-1510915933:786188..786258Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1575043694:786188..786258TCONS_00001603-exon-sc0000011-1575043694:786188..786258Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1491911889:786396..786616TCONS_00001603-exon-sc0000011-1491911889:786396..786616Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1510915933:786396..786616TCONS_00001603-exon-sc0000011-1510915933:786396..786616Clytia hemisphaericaexon
TCONS_00001603-exon-sc0000011-1575043694:786396..786616TCONS_00001603-exon-sc0000011-1575043694:786396..786616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:782140..786616 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
119.962	113.75	44.2308	36.579	114.825	85.1275	81.8013	85.0748	124.119	83.382	168.501	222.285	215.779	221.261	176.571	153.591	98.5421	147.469	89.7253	87.2124	215.763	195.976	127.845	136.794	136.792	182.565	96.2249	129.109	65.5138	74.5517
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00001603 vs. Swiss-Prot (Human)
Match: PNO1 (RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 8.912e-100
Identity = 160/207 (77.29%), Postives = 184/207 (88.89%), Query Frame = 1 
Query:  355 METDSA--AKKTNFPPVAIEEGV--GKTEFRKVPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLKKRVVEIRTCKETTDTGAIQKAEDFVKAFTLGFEVXXXXXXXXXXXXXXESFEINDVKPLKGDHLSRAIGRVAGKGGKTKFTIENVTKTRIVLADSKIHVLGSFQNIKIARTAICSLILGSPPSKVYGNMRAVAARSAERF 963
            M+T+ A  AK+  FPP+   +G+  GK E RK+PVP++RYTPLKENWMKIFTP+VEHL LQIRFNLK R VEIRTCKET D  A+ KA DFVKAF LGF+V+DALAL+RLDDLFLESFEI DVKPLKGDHLSRAIGR+AGKGGKTKFTIENVT+TRIVLAD K+H+LGSFQNIK+ARTAIC+LILG+PPSKVYGN+RAVA+RSA+RF
Sbjct:   47 MDTEEARPAKRPVFPPLC-GDGLLSGKEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADRF 252
The following BLAST results are available for this feature:
BLAST of TCONS_00001603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PNO18.912e-10077.29RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 P... [more]
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