TCONS_00001603-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001603-protein
Unique NameTCONS_00001603-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001603-protein ID=TCONS_00001603-protein|Name=TCONS_00001603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MATSKMDVNTESVEKKMENEKFSGDEETQGSEVTVSRKRKKEKVEIMETD
SAAKKTNFPPVAIEEGVGKTEFRKVPVPSHRYTPLKENWMKIFTPVVEHL
KLQIRFNLKKRVVEIRTCKETTDTGAIQKAEDFVKAFTLGFEVDDALALL
RLDDLFLESFEINDVKPLKGDHLSRAIGRVAGKGGKTKFTIENVTKTRIV
LADSKIHVLGSFQNIKIARTAICSLILGSPPSKVYGNMRAVAARSAERF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000835XLOC_000835Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001603TCONS_00001603Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 154..227
e-value: 3.7E-4
score: 29.8
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 153..249
e-value: 3.2E-12
score: 45.7
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 70..151
e-value: 6.4E-6
score: 25.6
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 154..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46

Blast
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BLAST of TCONS_00001603-protein vs. Swiss-Prot (Human)
Match: PNO1 (RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 5.836e-116
Identity = 160/207 (77.29%), Postives = 184/207 (88.89%), Query Frame = 0 
Query:   47 METDSA--AKKTNFPPVAIEEGV--GKTEFRKVPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLKKRVVEIRTCKETTDTGAIQKAEDFVKAFTLGFEVDDALALLRLDDLFLESFEINDVKPLKGDHLSRAIGRVAGKGGKTKFTIENVTKTRIVLADSKIHVLGSFQNIKIARTAICSLILGSPPSKVYGNMRAVAARSAERF 249
            M+T+ A  AK+  FPP+   +G+  GK E RK+PVP++RYTPLKENWMKIFTP+VEHL LQIRFNLK R VEIRTCKET D  A+ KA DFVKAF LGF+V+DALAL+RLDDLFLESFEI DVKPLKGDHLSRAIGR+AGKGGKTKFTIENVT+TRIVLAD K+H+LGSFQNIK+ARTAIC+LILG+PPSKVYGN+RAVA+RSA+RF
Sbjct:   47 MDTEEARPAKRPVFPPLC-GDGLLSGKEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADRF 252
The following BLAST results are available for this feature:
BLAST of TCONS_00001603-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PNO15.836e-11677.29RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 P... [more]
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