TCONS_00001602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001602
Unique NameTCONS_00001602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001602 ID=TCONS_00001602|Name=TCONS_00001602|organism=Clytia hemisphaerica|type=transcript|length=1412bp
gaaattttgaataacgTTTGGTCGCACTCAAGGGTATGGACACCAGTCAG
TAATAAAGTTTTGTTGCAATGGGGAGCGTTGTCAAAGAGAAAACGAAGAA
acgaaaaaatattaagaaaggAACGAGCACGAAAAGCCAAGACTACGAAA
TCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATACGCAAACNC
AACCAGCACGAAAAGCCAAGACTACGAAATCGACGATCTAATTCAAGAGG
AGTTGAAAGACGAAGAAATACGCAAACAAAGACAGAAAGAATTGGACGAA
ATCACACGTAACACTGCTTTAGATCTCGTAAACGAATTTATAGAGAACGA
AACTAGAAGTTCGTTCAAACGTAACACAAAAAAGTCGACCGCAAAAGCGT
CGAACGTCGATACAGAAAAACCAGTTAAaccgaaaacaaagaaaaagaaa
gcgaaGAAAGAGACAATCTTAGAGATGGAGGACCACGAGACCAAGATCGA
TTTATTGCACCTAGATGAAGAGAACACCCAGTCACAAACGTCTGTGAAAA
GCGCAaccaagaagaaaacaaaacccaaacagactaaaaacaaacagaaa
tgGGAAACATTTGAGGAGAATTCAACAGAGAAATCAGCTTCAAATAAAGA
AGGTACCGAGAAAACgacaaagaaaacgaaaaagcCAAAGGTTAATAAGA
TCTCACCAACTCCGCCTCCCGATAACGGTCAGCAGGATCGTAAGAAACGG
ATAAGCAAAGATACCAATGATTTGAAATTACAGAGTTTCTCTGAGGATAC
CGATTTAGAGGTTGATAGTTCATGCTTGACCATGCTTCTTATGGCAATCT
CACTTGAAAGTGAACTACCACCGAAATTCTACGCAAAATTATTGAATAGT
AAGCGATTTAAGGGAGCCTTAAAGAACATGACTCTTGAAGAACGAGAATT
AGTGCTTGCCATGATGAGTGATGTGGAGCCTGAAGTTGATTATTTGCCGa
tcagaaatgaaattttcattgatAGTTTCAAAGATCGTTTGACCGTCCCA
ACTTAAAAGATATGGAGAACTTCTTACCATAAAAGTCTAGGGTAATAAGA
GGTATCGAACAGTCAGTAAAACtgaaattcttaaaaatgaaaagttcttc
tTCGCCGAAGAGACCATCAGATTGTATATTGAAAGGTCAAATGTAAACTC
TTGCGAATGCTTATTAAAATGATGTGATACAGTTATGAGAATTCAAATAC
GGTATAATATGACTTTAGACTGgattttcaagttaaaaaaagGACGATAA
AAGCAACGCAAACTGGCATAAAACCAAAACACCCTTAATATAATCGGTCT
CGGACAAACGGTTTACTGGGATGCAACAAAATCTCATTGTCATTTACGAA
TGGGatgttact
Run BLAST on NCBI

transcript from alignment at sc0000011:763707..767676+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001602 ID=TCONS_00001602|Name=TCONS_00001602|organism=Clytia hemisphaerica|type=transcript|length=3970bp|location=Sequence derived from alignment at sc0000011:763707..767676+ (Clytia hemisphaerica)
gaaattttgaataacgTTTGGTCGCACTCAAGGGTATGGACACCAGTCAG TAATAAAGGTAAAGGATACGATACAGTGGGTGCATCTTGcaattcctgca ttaataacacgcacgcgtaatttgtcgttcttttaaaccacttGTAGTTA ATTCCCGGGATAAACAAACAGAAATGAATCGCTAAAGGTGATCCAATTat tttcggtcggggttgtgaacggcaaaaatatgaaatttggcGTTCTTTTC tgtcgttttttataaaatttgtcgttttttttgtctattttcggTAATGC AGGATTTGTAAGATAGAGCCTCTCATACGataagttatttaaaaaaaatt tatttcaaaatatcttttaaagATGCATAATTTAGCTGTCCTCGATCAAT CAATTTTAACGTTTGATACACTAAAAACTAATTTAcgttattttatcaaa aaccgGTTGTGATTTGCTGAAGCATTAAAAGCATGTGAAAACATGACAAC CTCTTTAGAACCTGTCTTTTGAAGCATGTCTaatcaatgtcaattgaata acAAACTTGGTCTGGAAGTCAggttattttgaatttcaagattGAGACTT TTTTGCCTATActttttaatcacatgatcagaATCCGCGTTAGAGCGTTA ATTGTCGCAGTGAAAGGTAATGTGACATCGCCCATTTAATTAGCCCGGGG TCCAGTTAAAGTTTTTTGATTGACTGAATAGCGCTAATAAGAGGCCCGGC GTAATTTGGCGGTAGCAAATACATGCACTAAatccagtccctttttggaa aaacaaacaaacagaaaacGACCAATAGAccaaatttttttcagattttt gaggtatttacatgtttttattatagtttcataagttttgatggggtttt agaatattattttattgatttgttgttttcttataatttttgaaaacgaa agtgaaaaaaatcaagatggcgATATCCTCTAGTCCGGACTTCCTGAGCA GGTGGATATCTAGCCCGGGGTCctcttaaagctttttttatagactggat ggcgcaattaagtggcccggtagtatatggtaatatgcttttgcctaggc ggactgtaaaacagtccgccagattttagttgtttttggaaggtaaaaac agtatgtagcaatgtttttatacgagaataagggattgcaaacctgttat tgatgtttgtttctcatttttgattatatctttcaacttcgagtagtttt attgttatttggatttttaacattttttttcaaaatggcgacctcgccaa atgctcctagtctacttcactggactcagcgtcataaaaaattgtcaaaa agcaaagttcagccaaaagtagactctagtctagtggATATCCAAATTGA CAATGTTCAGATTGTTTAATTTAGCGTATCTTTCAAAGAGAAATTTTAGA TCATTCATTCTGGATCTAAATGAGTTTTAGTTGTAGTGTGACTGGAAATT TCCAGGTGAGACAAACAGATGATTTGTGTTCAAAACACGAAATTCAcgtg ttttttcttcttcaatcttCAATAAATGAGCTTGAAAATTGGAAATTAGA AGTTTGTTCAAGATTTTCAAGTTGGAAATCACCTATCTTAGTTGGTATAA GAGCATATATAAAGGAAAAATGATGGAACAAGAACGACAGGGAGCACGAG ATTTTGAAATCAGTATGTAACTTTCTTCTTCAAAAGTAGAACCTAAAATC ATTCAAACTGCgggaaaatcttcattttcattctcATTTTTACTCTGGTG TTGATCAAAAGTAAATTAAGCTCCAACAAATTTAATCAAGGAAGCTTCCA GAAAATAAAGTGACTTTTTTATTGGTTAAAATTGATGTTGGCCATGAGAA ACGCTTTGAAAAATGCCTCCTTTGTTTTAGAGCAATTTATTTTCGTTTGG TTATATACTCTAGATTAGGCTtgagaaatagaaaaattaccttttttatA GGTATTGGCTAAACAAGTTCTAAGACATTTTAGGTTGATTATTTTATCAT GCTGGATGAGAGAGCTTAGCATACCCGGTGGAaaaaccgtaaaagtgggg aggctgaagactcaaatgggataaaattcgcactaggaatttgagaaaaa tggttagaaaagaagattgttttgttgttgggAGATTTTATTGTCGCTCT ATTATATAGAATAAAAGCTTCGAAAATATTACAAAGTCTGCCAATCTTTG GAATTATCAATTAGTTTGAAAGGGCCTTCGGAGGTCAAATGACGTAGAAT TTCGCCCACTCATATTAAGATTTGTCAACTGTTAAAAAGCTAGGCAAGAA GAAATCGATAAAATTATTAACATTGAAAGCAAAAAAAGGGAATCGATAGG GGGAAAGTAataattattcaatttttatgtttctatatttctattttcac tCATCTTCAAGTGGCTAGTACAATAGGAATATAGATTGAACAGTAACGAG TGATCTATTTTTTTCACAGCGAAATTATTTATGTGGCCACCAAGAGGTAT TCGTTCGAAAAcagttttctatttttttaatattttcctacgttttttct tccttttttccttcAGTTTTGTTGCAATGGGGAGCGTTGTCAAAGAGAAA ACGAAGAAacgaaaaaatattaagaaaggAACGAGCACGAAAAGCCAAGA CTACGAAATCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATAC GCAAACNCAACCAGCACGAAAAGCCAAGACTACGAAATCGACGATCTAAT TCAAGAGGAGTTGAAAGACGAAGAAATACGCAAACAAAGACAGAAAGAAT TGGACGAAATCACACGTAACACTGCTTTAGATCTCGTAAACGAATTTATA GAGAACGAAACTAGAAGTTCGTTCAAACGTAACACAAAAAAGTCGACCGC AAAAGCGTCGAACGTCGATACAGAAAAACCAGTTAAaccgaaaacaaaga aaaagaaagcgaaGAAAGAGACAATCTTAGAGATGGAGGACCACGAGACC AAGATCGATTTATTGCACCTAGATGAAGAGAACACCCAGTCACAAACGTC TGTGAAAAGCGCAaccaagaagaaaacaaaacccaaacagactaaaaaca aacagaaatgGGAAACATTTGAGGAGAATTCAACAGAGAAATCAGCTTCA AATAAAGAAGGTACCGAGAAAACgacaaagaaaacgaaaaagcCAAAGGT TAATAAGATCTCACCAACTCCGCCTCCCGATAACGGTCAGCAGGATCGTA AGAAACGGATAAGCAAAGATACCAATGATTTGAAATTACAGAGTTTCTCT GAGGATACCGATTTAGAGGTTGATAGTTCATGCTTGACCATGCTTCTTAT GGCAATCTCACTTGAAAGTGAACTACCACCGAAATTCTACGCAAAATTAT TGAATAGTAAGCGATTTAAGGGAGCCTTAAAGAACATGACTCTTGAAGAA CGAGAATTAGTGCTTGCCATGATGAGTGATGTGGAGCCTGAAGTTGATTA TTTGCCGatcagaaatgaaattttcattgatAGTTTCAAAGATCGTTTGA CCGTCCCAACTTAAAAGATATGGAGAACTTCTTACCATAAAAGTCTAGGG TAATAAGAGGTATCGAACAGTCAGTAAAACtgaaattcttaaaaatgaaa agttcttctTCGCCGAAGAGACCATCAGATTGTATATTGAAAGGTCAAAT GTAAACTCTTGCGAATGCTTATTAAAATGATGTGATACAGTTATGAGAAT TCAAATACGGTATAATATGACTTTAGACTGgattttcaagttaaaaaaag GACGATAAAAGCAACGCAAACTGGCATAAAACCAAAACACCCTTAATATA ATCGGTCTCGGACAAACGGTTTACTGGGATGCAACAAAATCTCATTGTCA TTTACGAATGGGatgttact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000834XLOC_000834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001602-exon-sc0000011-1491911889:763707..763764TCONS_00001602-exon-sc0000011-1491911889:763707..763764Clytia hemisphaericaexon
TCONS_00001602-exon-sc0000011-1510915933:763707..763764TCONS_00001602-exon-sc0000011-1510915933:763707..763764Clytia hemisphaericaexon
TCONS_00001602-exon-sc0000011-1575043694:763707..763764TCONS_00001602-exon-sc0000011-1575043694:763707..763764Clytia hemisphaericaexon
TCONS_00001602-exon-sc0000011-1491911889:766323..767676TCONS_00001602-exon-sc0000011-1491911889:766323..767676Clytia hemisphaericaexon
TCONS_00001602-exon-sc0000011-1510915933:766323..767676TCONS_00001602-exon-sc0000011-1510915933:766323..767676Clytia hemisphaericaexon
TCONS_00001602-exon-sc0000011-1575043694:766323..767676TCONS_00001602-exon-sc0000011-1575043694:766323..767676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:763707..767676 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0884732 0.0287584 0.300522 0 0.119311 0.0942812 0.068407 1.2284e-06 0.00523736 3.0834 0 3.21743 2.27003 0.201162 0.0950238 0.0898551 2.31788 3.34343 3.45273 3.33768 3.80306 5.18454 1.22886 2.37933 1.14613 1.19289e-06 0.175858 0.38841 0.0981983 0.166748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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