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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001602 ID=TCONS_00001602|Name=TCONS_00001602|organism=Clytia hemisphaerica|type=transcript|length=1412bp gaaattttgaataacgTTTGGTCGCACTCAAGGGTATGGACACCAGTCAG TAATAAAGTTTTGTTGCAATGGGGAGCGTTGTCAAAGAGAAAACGAAGAA acgaaaaaatattaagaaaggAACGAGCACGAAAAGCCAAGACTACGAAA TCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATACGCAAACNC AACCAGCACGAAAAGCCAAGACTACGAAATCGACGATCTAATTCAAGAGG AGTTGAAAGACGAAGAAATACGCAAACAAAGACAGAAAGAATTGGACGAA ATCACACGTAACACTGCTTTAGATCTCGTAAACGAATTTATAGAGAACGA AACTAGAAGTTCGTTCAAACGTAACACAAAAAAGTCGACCGCAAAAGCGT CGAACGTCGATACAGAAAAACCAGTTAAaccgaaaacaaagaaaaagaaa gcgaaGAAAGAGACAATCTTAGAGATGGAGGACCACGAGACCAAGATCGA TTTATTGCACCTAGATGAAGAGAACACCCAGTCACAAACGTCTGTGAAAA GCGCAaccaagaagaaaacaaaacccaaacagactaaaaacaaacagaaa tgGGAAACATTTGAGGAGAATTCAACAGAGAAATCAGCTTCAAATAAAGA AGGTACCGAGAAAACgacaaagaaaacgaaaaagcCAAAGGTTAATAAGA TCTCACCAACTCCGCCTCCCGATAACGGTCAGCAGGATCGTAAGAAACGG ATAAGCAAAGATACCAATGATTTGAAATTACAGAGTTTCTCTGAGGATAC CGATTTAGAGGTTGATAGTTCATGCTTGACCATGCTTCTTATGGCAATCT CACTTGAAAGTGAACTACCACCGAAATTCTACGCAAAATTATTGAATAGT AAGCGATTTAAGGGAGCCTTAAAGAACATGACTCTTGAAGAACGAGAATT AGTGCTTGCCATGATGAGTGATGTGGAGCCTGAAGTTGATTATTTGCCGa tcagaaatgaaattttcattgatAGTTTCAAAGATCGTTTGACCGTCCCA ACTTAAAAGATATGGAGAACTTCTTACCATAAAAGTCTAGGGTAATAAGA GGTATCGAACAGTCAGTAAAACtgaaattcttaaaaatgaaaagttcttc tTCGCCGAAGAGACCATCAGATTGTATATTGAAAGGTCAAATGTAAACTC TTGCGAATGCTTATTAAAATGATGTGATACAGTTATGAGAATTCAAATAC GGTATAATATGACTTTAGACTGgattttcaagttaaaaaaagGACGATAA AAGCAACGCAAACTGGCATAAAACCAAAACACCCTTAATATAATCGGTCT CGGACAAACGGTTTACTGGGATGCAACAAAATCTCATTGTCATTTACGAA TGGGatgttact Run BLAST on NCBI transcript from alignment at sc0000011:763707..767676+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001602 ID=TCONS_00001602|Name=TCONS_00001602|organism=Clytia hemisphaerica|type=transcript|length=3970bp|location=Sequence derived from alignment at sc0000011:763707..767676+ (Clytia hemisphaerica) gaaattttgaataacgTTTGGTCGCACTCAAGGGTATGGACACCAGTCAG
TAATAAAGGTAAAGGATACGATACAGTGGGTGCATCTTGcaattcctgca
ttaataacacgcacgcgtaatttgtcgttcttttaaaccacttGTAGTTA
ATTCCCGGGATAAACAAACAGAAATGAATCGCTAAAGGTGATCCAATTat
tttcggtcggggttgtgaacggcaaaaatatgaaatttggcGTTCTTTTC
tgtcgttttttataaaatttgtcgttttttttgtctattttcggTAATGC
AGGATTTGTAAGATAGAGCCTCTCATACGataagttatttaaaaaaaatt
tatttcaaaatatcttttaaagATGCATAATTTAGCTGTCCTCGATCAAT
CAATTTTAACGTTTGATACACTAAAAACTAATTTAcgttattttatcaaa
aaccgGTTGTGATTTGCTGAAGCATTAAAAGCATGTGAAAACATGACAAC
CTCTTTAGAACCTGTCTTTTGAAGCATGTCTaatcaatgtcaattgaata
acAAACTTGGTCTGGAAGTCAggttattttgaatttcaagattGAGACTT
TTTTGCCTATActttttaatcacatgatcagaATCCGCGTTAGAGCGTTA
ATTGTCGCAGTGAAAGGTAATGTGACATCGCCCATTTAATTAGCCCGGGG
TCCAGTTAAAGTTTTTTGATTGACTGAATAGCGCTAATAAGAGGCCCGGC
GTAATTTGGCGGTAGCAAATACATGCACTAAatccagtccctttttggaa
aaacaaacaaacagaaaacGACCAATAGAccaaatttttttcagattttt
gaggtatttacatgtttttattatagtttcataagttttgatggggtttt
agaatattattttattgatttgttgttttcttataatttttgaaaacgaa
agtgaaaaaaatcaagatggcgATATCCTCTAGTCCGGACTTCCTGAGCA
GGTGGATATCTAGCCCGGGGTCctcttaaagctttttttatagactggat
ggcgcaattaagtggcccggtagtatatggtaatatgcttttgcctaggc
ggactgtaaaacagtccgccagattttagttgtttttggaaggtaaaaac
agtatgtagcaatgtttttatacgagaataagggattgcaaacctgttat
tgatgtttgtttctcatttttgattatatctttcaacttcgagtagtttt
attgttatttggatttttaacattttttttcaaaatggcgacctcgccaa
atgctcctagtctacttcactggactcagcgtcataaaaaattgtcaaaa
agcaaagttcagccaaaagtagactctagtctagtggATATCCAAATTGA
CAATGTTCAGATTGTTTAATTTAGCGTATCTTTCAAAGAGAAATTTTAGA
TCATTCATTCTGGATCTAAATGAGTTTTAGTTGTAGTGTGACTGGAAATT
TCCAGGTGAGACAAACAGATGATTTGTGTTCAAAACACGAAATTCAcgtg
ttttttcttcttcaatcttCAATAAATGAGCTTGAAAATTGGAAATTAGA
AGTTTGTTCAAGATTTTCAAGTTGGAAATCACCTATCTTAGTTGGTATAA
GAGCATATATAAAGGAAAAATGATGGAACAAGAACGACAGGGAGCACGAG
ATTTTGAAATCAGTATGTAACTTTCTTCTTCAAAAGTAGAACCTAAAATC
ATTCAAACTGCgggaaaatcttcattttcattctcATTTTTACTCTGGTG
TTGATCAAAAGTAAATTAAGCTCCAACAAATTTAATCAAGGAAGCTTCCA
GAAAATAAAGTGACTTTTTTATTGGTTAAAATTGATGTTGGCCATGAGAA
ACGCTTTGAAAAATGCCTCCTTTGTTTTAGAGCAATTTATTTTCGTTTGG
TTATATACTCTAGATTAGGCTtgagaaatagaaaaattaccttttttatA
GGTATTGGCTAAACAAGTTCTAAGACATTTTAGGTTGATTATTTTATCAT
GCTGGATGAGAGAGCTTAGCATACCCGGTGGAaaaaccgtaaaagtgggg
aggctgaagactcaaatgggataaaattcgcactaggaatttgagaaaaa
tggttagaaaagaagattgttttgttgttgggAGATTTTATTGTCGCTCT
ATTATATAGAATAAAAGCTTCGAAAATATTACAAAGTCTGCCAATCTTTG
GAATTATCAATTAGTTTGAAAGGGCCTTCGGAGGTCAAATGACGTAGAAT
TTCGCCCACTCATATTAAGATTTGTCAACTGTTAAAAAGCTAGGCAAGAA
GAAATCGATAAAATTATTAACATTGAAAGCAAAAAAAGGGAATCGATAGG
GGGAAAGTAataattattcaatttttatgtttctatatttctattttcac
tCATCTTCAAGTGGCTAGTACAATAGGAATATAGATTGAACAGTAACGAG
TGATCTATTTTTTTCACAGCGAAATTATTTATGTGGCCACCAAGAGGTAT
TCGTTCGAAAAcagttttctatttttttaatattttcctacgttttttct
tccttttttccttcAGTTTTGTTGCAATGGGGAGCGTTGTCAAAGAGAAA
ACGAAGAAacgaaaaaatattaagaaaggAACGAGCACGAAAAGCCAAGA
CTACGAAATCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATAC
GCAAACNCAACCAGCACGAAAAGCCAAGACTACGAAATCGACGATCTAAT
TCAAGAGGAGTTGAAAGACGAAGAAATACGCAAACAAAGACAGAAAGAAT
TGGACGAAATCACACGTAACACTGCTTTAGATCTCGTAAACGAATTTATA
GAGAACGAAACTAGAAGTTCGTTCAAACGTAACACAAAAAAGTCGACCGC
AAAAGCGTCGAACGTCGATACAGAAAAACCAGTTAAaccgaaaacaaaga
aaaagaaagcgaaGAAAGAGACAATCTTAGAGATGGAGGACCACGAGACC
AAGATCGATTTATTGCACCTAGATGAAGAGAACACCCAGTCACAAACGTC
TGTGAAAAGCGCAaccaagaagaaaacaaaacccaaacagactaaaaaca
aacagaaatgGGAAACATTTGAGGAGAATTCAACAGAGAAATCAGCTTCA
AATAAAGAAGGTACCGAGAAAACgacaaagaaaacgaaaaagcCAAAGGT
TAATAAGATCTCACCAACTCCGCCTCCCGATAACGGTCAGCAGGATCGTA
AGAAACGGATAAGCAAAGATACCAATGATTTGAAATTACAGAGTTTCTCT
GAGGATACCGATTTAGAGGTTGATAGTTCATGCTTGACCATGCTTCTTAT
GGCAATCTCACTTGAAAGTGAACTACCACCGAAATTCTACGCAAAATTAT
TGAATAGTAAGCGATTTAAGGGAGCCTTAAAGAACATGACTCTTGAAGAA
CGAGAATTAGTGCTTGCCATGATGAGTGATGTGGAGCCTGAAGTTGATTA
TTTGCCGatcagaaatgaaattttcattgatAGTTTCAAAGATCGTTTGA
CCGTCCCAACTTAAAAGATATGGAGAACTTCTTACCATAAAAGTCTAGGG
TAATAAGAGGTATCGAACAGTCAGTAAAACtgaaattcttaaaaatgaaa
agttcttctTCGCCGAAGAGACCATCAGATTGTATATTGAAAGGTCAAAT
GTAAACTCTTGCGAATGCTTATTAAAATGATGTGATACAGTTATGAGAAT
TCAAATACGGTATAATATGACTTTAGACTGgattttcaagttaaaaaaag
GACGATAAAAGCAACGCAAACTGGCATAAAACCAAAACACCCTTAATATA
ATCGGTCTCGGACAAACGGTTTACTGGGATGCAACAAAATCTCATTGTCA
TTTACGAATGGGatgttact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001602-exon-sc0000011-1491911889:763707..763764 | TCONS_00001602-exon-sc0000011-1491911889:763707..763764 | Clytia hemisphaerica | exon |
TCONS_00001602-exon-sc0000011-1510915933:763707..763764 | TCONS_00001602-exon-sc0000011-1510915933:763707..763764 | Clytia hemisphaerica | exon |
TCONS_00001602-exon-sc0000011-1575043694:763707..763764 | TCONS_00001602-exon-sc0000011-1575043694:763707..763764 | Clytia hemisphaerica | exon |
TCONS_00001602-exon-sc0000011-1491911889:766323..767676 | TCONS_00001602-exon-sc0000011-1491911889:766323..767676 | Clytia hemisphaerica | exon |
TCONS_00001602-exon-sc0000011-1510915933:766323..767676 | TCONS_00001602-exon-sc0000011-1510915933:766323..767676 | Clytia hemisphaerica | exon |
TCONS_00001602-exon-sc0000011-1575043694:766323..767676 | TCONS_00001602-exon-sc0000011-1575043694:766323..767676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000011 | supercontig | sc0000011:763707..767676 + |
Blast
The following BLAST results are available for this feature:
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