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TCONS_00001599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001599
Unique NameTCONS_00001599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001599 ID=TCONS_00001599|Name=TCONS_00001599|organism=Clytia hemisphaerica|type=transcript|length=1115bp
aaaaaattttgatggacgttttgttttgattgtcatCTTTTCCTCTTTTG
ACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCTAATATGGCA
TCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTTAAATTCATG
AATCATGTAATTAAATAAAGGAGAAGCAAATCATGGCAACAATGTTTATG
GATACTTCAGAAGATCAATCTTTGAACGCAAAATCCGCTTTACGAAATGC
ACTTCGAGCAAAATTGAAATCAAGTTCATCTTTTGAAGATACTACCACTA
CTTCTTCAACTACAAGTTTTGATTTGACACGTACTTCTAGTATGAGCAGT
AATTTGAATTATGACGATACTTCAATCAAATTGATTGATGTTGAAACTCT
TGGAAATGAAAGTGATGAAAGTGGTGAATCTGACGAAAAGATGGATGAAA
AGGAAAGTTCAACAGCAGTAAGTTCAATTCCATTGGAAGAGAGAAGATTA
CGAAATCGTTTAGCTGCCAGAAAATGTAGAGAAAAAAGGAAGCAACGCAT
AATGAATCTAGAAAAGatATGCAACAATCTAGAAAGTAGGATTGATATGT
TGACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaatttaacaaGA
CTACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGCCAACTGCTGT
TATTAAGAATGCAGTCATGTCCAAGTGATTTAAGTCCAGTTAAATGCACA
AATTTTATACGCACacacaaaaaagaaattttttaattgataCAACAACA
TTGTTATTTATACAATAGCTTCATTATTTTCCACACCAAAATATtgtaaa
tactgtaaataaGATGATAcgttttagtttttgttttatatcatataaat
tattttattaagtATTACTTCTATGAACCTTGGGatggataaaaaatttt
taaagttgaaGTCTGTTCtagtattttttttacaattttttgtaCAGTTT
TTAGATGAATTTTAGTTCTGGTAGCTAAAATTACATTGACTGTGATAAAA
ATGAACCTTTTTGAGCCTAAATAATGAAgagatttttaataattttgtaG
AATTGAAAAGGGTTT
Run BLAST on NCBI

protein sequence of TCONS_00001599-protein

>TCONS_00001599-protein ID=TCONS_00001599-protein|Name=TCONS_00001599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MATMFMDTSEDQSLNAKSALRNALRAKLKSSSSFEDTTTTSSTTSFDLTR
TSSMSSNLNYDDTSIKLIDVETLGNESDESGESDEKMDEKESSTAVSSIP
LEERRLRNRLAARKCREKRKQRIMNLEKICNNLESRIDMLTAEIEGLDGQ
KKNLTRLLENHNCVRLTPKPTAVIKNAVMSK
Run BLAST on NCBI

transcript from alignment at sc0000011:738543..740355+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001599 ID=TCONS_00001599|Name=TCONS_00001599|organism=Clytia hemisphaerica|type=transcript|length=1813bp|location=Sequence derived from alignment at sc0000011:738543..740355+ (Clytia hemisphaerica)
aaaaaattttgatggacgttttgttttgattgtcatCTTTTCCTCTTTTG ACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCTAATATGGCA TCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTTAAATTCATG AATCATGTAATTAAATAAAGGTATGAGGTTATCATTGACGTTGCATTGTt tgtaaaacattttaaaaggcATTGCTGTAATTCTCGATTGATCATTTGTT GTCTTCTAATCGCTCGTCAAGGTGATTTGCACAAAAGGTTGAGCTGAAGT AAAATTCCATGTGCAACAGCGTGAGTGGGACTTAGAGATTAGAAAATAAT TGGATTAAGATTTAGCGTGATAACATACAGGACAATATTAGTATAAATTC GGCTGTTTTGAGTTGAGACACATCTGACATCATTATCCACACCACCACAA CCAGACACACAGCGTTTTGAGTAAACCCTTGAATCGTTTTCAGGAGAAGC AAATCATGGCAACAATGTTTATGGATACTTCAGAAGATCAATCTTTGAAC GCAAAATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTC ATCTTTTGAAGATACTACCACTACTTCTTCAACTACAAGTTTTGATTTGA CACGTACTTCTAGTATGAGCAGTAATTTGAATTATGACGATACTTCAATC AAATTGATTGATGTTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGA ATCTGACGAAAAGATGGATGAAAAGGTAAAATTTTCAATCTACTAATCAA ATTTTAATCGATCAATTTTTCCTAAAAGAAATCGATACAAATAATGATAA CAACAAATTCTCAGAACTAATGATTCTTCTATCTTTACAGGAAAGTTCAA CAGCAGTAAGTTCAATTCCATTGGAAGAGAGAAGATTACGAAATCGTTTA GCTGCCAGAAAATGTAGAGAAAAAAGGAAGCAACGCATAATGAATCTAGA AAAGGTAATAGAGCTTACATTTATTTATATTCGTATATggctttttgtta atttttactTCGTGATTCTGTACTTACTGTCTTCTTAAATACCTACAAAA CTATGAGTATTTAGGATACAATAATGTTTTCCTTTTGTCCTTGTTTCTGC TATAAAGCAGACAACAAGACGACCTTTACTGGGccctttatttattttat actttaaaaagtgtcttttctttctgactgaCTTTTAAACTtgatctctt ttttttttattcagatATGCAACAATCTAGAAAGTAGGATTGATATGTTG ACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaatttaacaaGACT ACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGCCAACTGCTGTTA TTAAGAATGCAGTCATGTCCAAGTGATTTAAGTCCAGTTAAATGCACAAA TTTTATACGCACacacaaaaaagaaattttttaattgataCAACAACATT GTTATTTATACAATAGCTTCATTATTTTCCACACCAAAATATtgtaaata ctgtaaataaGATGATAcgttttagtttttgttttatatcatataaatta ttttattaagtATTACTTCTATGAACCTTGGGatggataaaaaattttta aagttgaaGTCTGTTCtagtattttttttacaattttttgtaCAGTTTTT AGATGAATTTTAGTTCTGGTAGCTAAAATTACATTGACTGTGATAAAAAT GAACCTTTTTGAGCCTAAATAATGAAgagatttttaataattttgtaGAA TTGAAAAGGGTTT

Coding sequence (CDS) from alignment at sc0000011:738543..740355+

>TCONS_00001599 ID=TCONS_00001599|Name=TCONS_00001599|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000011:738543..740355+ (Clytia hemisphaerica)
ATGGCAACAATGTTTATGGATACTTCAGAAGATCAATCTTTGAACGCAAA
ATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTCATCTT
TTGAAGATACTACCACTACTTCTTCAACTACAAGTTTTGATTTGACACGT
ACTTCTAGTATGAGCAGTAATTTGAATTATGACGATACTTCAATCAAATT
GATTGATGTTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGAATCTG
ACGAAAAGATGGATGAAAAGGAAAGTTCAACAGCAGTAAGTTCAATTCCA
TTGGAAGAGAGAAGATTACGAAATCGTTTAGCTGCCAGAAAATGTAGAGA
AAAAAGGAAGCAACGCATAATGAATCTAGAAAAGatATGCAACAATCTAG
AAAGTAGGATTGATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaa
aaaaagaatttaacaaGACTACTGGAAAATCATAATTGCGTCCGACTCAC
TCCAAAGCCAACTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGAATGG
CAACAATGTTTATGGATACTTCAGAAGATCAATCTTTGAACGCAAAATCC
GCTTTACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTCATCTTTTGA
AGATACTACCACTACTTCTTCAACTACAAGTTTTGATTTGACACGTACTT
CTAGTATGAGCAGTAATTTGAATTATGACGATACTTCAATCAAATTGATT
GATGTTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGAATCTGACGA
AAAGATGGATGAAAAGGAAAGTTCAACAGCAGTAAGTTCAATTCCATTGG
AAGAGAGAAGATTACGAAATCGTTTAGCTGCCAGAAAATGTAGAGAAAAA
AGGAAGCAACGCATAATGAATCTAGAAAAGatATGCAACAATCTAGAAAG
TAGGATTGATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaaaaaa
agaatttaacaaGACTACTGGAAAATCATAATTGCGTCCGACTCACTCCA
AAGCCAACTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGAATGGCAAC
AATGTTTATGGATACTTCAGAAGATCAATCTTTGAACGCAAAATCCGCTT
TACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTCATCTTTTGAAGAT
ACTACCACTACTTCTTCAACTACAAGTTTTGATTTGACACGTACTTCTAG
TATGAGCAGTAATTTGAATTATGACGATACTTCAATCAAATTGATTGATG
TTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGAATCTGACGAAAAG
ATGGATGAAAAGGAAAGTTCAACAGCAGTAAGTTCAATTCCATTGGAAGA
GAGAAGATTACGAAATCGTTTAGCTGCCAGAAAATGTAGAGAAAAAAGGA
AGCAACGCATAATGAATCTAGAAAAGatATGCAACAATCTAGAAAGTAGG
ATTGATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaa
tttaacaaGACTACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGC
CAACTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000833XLOC_000833Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001599-proteinTCONS_00001599-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001599-exon-sc0000011-1491911889:738543..738712TCONS_00001599-exon-sc0000011-1491911889:738543..738712Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1510915933:738543..738712TCONS_00001599-exon-sc0000011-1510915933:738543..738712Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1575043694:738543..738712TCONS_00001599-exon-sc0000011-1575043694:738543..738712Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1491911889:739036..739317TCONS_00001599-exon-sc0000011-1491911889:739036..739317Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1510915933:739036..739317TCONS_00001599-exon-sc0000011-1510915933:739036..739317Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1575043694:739036..739317TCONS_00001599-exon-sc0000011-1575043694:739036..739317Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1491911889:739433..739546TCONS_00001599-exon-sc0000011-1491911889:739433..739546Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1510915933:739433..739546TCONS_00001599-exon-sc0000011-1510915933:739433..739546Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1575043694:739433..739546TCONS_00001599-exon-sc0000011-1575043694:739433..739546Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1491911889:739807..740355TCONS_00001599-exon-sc0000011-1491911889:739807..740355Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1510915933:739807..740355TCONS_00001599-exon-sc0000011-1510915933:739807..740355Clytia hemisphaericaexon
TCONS_00001599-exon-sc0000011-1575043694:739807..740355TCONS_00001599-exon-sc0000011-1575043694:739807..740355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:738543..740355 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.789778 0.475023 0.411056 0.79255 1.29951 0.56787 4.85765 5.99429 1.91151 0.460444 0.673006 0.803436 6.99478 1.68973 4.14898 6.80139 0.000401792 0.987944 7.21242 5.94981 0.0165125 1.71111 3.71019 6.15646 1.69159 2.43759 3.02047 2.3884 8.32173 8.68193
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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