TCONS_00001598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001598
Unique NameTCONS_00001598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001598 ID=TCONS_00001598|Name=TCONS_00001598|organism=Clytia hemisphaerica|type=transcript|length=1447bp
tttttcaaaaaaaaattttgatggacgttttgttttgattgtcatCTTTT
CCTCTTTTGACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCT
AATATGGCATCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTT
AAATTCATGAATCATGTAATTAAATAAAGGTATGAGGTTATCATTGACGT
TGCATTGTttgtaaaacattttaaaaggcATTGCTGTAATTCTCGATTGA
TCATTTGTTGTCTTCTAATCGCTCGTCAAGGTGATTTGCACAAAAGGTTG
AGCTGAAGTAAAATTCCATGTGCAACAGCGTGAGTGGGACTTAGAGATTA
GAAAATAATTGGATTAAGATTTAGCGTGATAACATACAGGACAATATTAG
TATAAATTCGGCTGTTTTGAGTTGAGACACATCTGACATCATTATCCACA
CCACCACAACCAGACACACAGCGTTTTGAGTAAACCCTTGAATCGTTTTC
AGGAGAAGCAAATCATGGCAACAATGTTTATGGATACTTCAGAAGATCAA
TCTTTGAACGCAAAATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAA
ATCAAGTTCATCTTTTGAAGATACTACCACTACTTCTTCAACTACAAGTT
TTGATTTGACACGTACTTCTAGTATGAGCAGTAATTTGAATTATGACGAT
ACTTCAATCAAATTGATTGATGTTGAAACTCTTGGAAATGAAAGTGATGA
AAGTGGTGAATCTGACGAAAAGATGGATGAAAAGGAAAGTTCAACAGCAG
TAAGTTCAATTCCATTGGAAGAGAGAAGATTACGAAATCGTTTAGCTGCC
AGAAAATGTAGAGAAAAAAGGAAGCAACGCATAATGAATCTAGAAAAGat
ATGCAACAATCTAGAAAGTAGGATTGATATGTTGACAGCCGAAATTGAAG
GATTAGATGggcaaaaaaagaatttaacaaGACTACTGGAAAATCATAAT
TGCGTCCGACTCACTCCAAAGCCAACTGCTGTTATTAAGAATGCAGTCAT
GTCCAAGTGATTTAAGTCCAGTTAAATGCACAAATTTTATACGCACacac
aaaaaagaaattttttaattgataCAACAACATTGTTATTTATACAATAG
CTTCATTATTTTCCACACCAAAATATtgtaaatactgtaaataaGATGAT
AcgttttagtttttgttttatatcatataaattattttattaagtATTAC
TTCTATGAACCTTGGGatggataaaaaatttttaaagttgaaGTCTGTTC
tagtattttttttacaattttttgtaCAGTTTTTAGATGAATTTTAGTTC
TGGTAGCTAAAATTACATTGACTGTGATAAAAATGAACCTTTTTGAGCCT
AAATAATGAAgagatttttaataattttgtaGAATTGAAAAGGGTTT
Run BLAST on NCBI

transcript from alignment at sc0000011:738534..740355+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001598 ID=TCONS_00001598|Name=TCONS_00001598|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at sc0000011:738534..740355+ (Clytia hemisphaerica)
tttttcaaaaaaaaattttgatggacgttttgttttgattgtcatCTTTT CCTCTTTTGACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCT AATATGGCATCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTT AAATTCATGAATCATGTAATTAAATAAAGGTATGAGGTTATCATTGACGT TGCATTGTttgtaaaacattttaaaaggcATTGCTGTAATTCTCGATTGA TCATTTGTTGTCTTCTAATCGCTCGTCAAGGTGATTTGCACAAAAGGTTG AGCTGAAGTAAAATTCCATGTGCAACAGCGTGAGTGGGACTTAGAGATTA GAAAATAATTGGATTAAGATTTAGCGTGATAACATACAGGACAATATTAG TATAAATTCGGCTGTTTTGAGTTGAGACACATCTGACATCATTATCCACA CCACCACAACCAGACACACAGCGTTTTGAGTAAACCCTTGAATCGTTTTC AGGAGAAGCAAATCATGGCAACAATGTTTATGGATACTTCAGAAGATCAA TCTTTGAACGCAAAATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAA ATCAAGTTCATCTTTTGAAGATACTACCACTACTTCTTCAACTACAAGTT TTGATTTGACACGTACTTCTAGTATGAGCAGTAATTTGAATTATGACGAT ACTTCAATCAAATTGATTGATGTTGAAACTCTTGGAAATGAAAGTGATGA AAGTGGTGAATCTGACGAAAAGATGGATGAAAAGGTAAAATTTTCAATCT ACTAATCAAATTTTAATCGATCAATTTTTCCTAAAAGAAATCGATACAAA TAATGATAACAACAAATTCTCAGAACTAATGATTCTTCTATCTTTACAGG AAAGTTCAACAGCAGTAAGTTCAATTCCATTGGAAGAGAGAAGATTACGA AATCGTTTAGCTGCCAGAAAATGTAGAGAAAAAAGGAAGCAACGCATAAT GAATCTAGAAAAGGTAATAGAGCTTACATTTATTTATATTCGTATATggc tttttgttaatttttactTCGTGATTCTGTACTTACTGTCTTCTTAAATA CCTACAAAACTATGAGTATTTAGGATACAATAATGTTTTCCTTTTGTCCT TGTTTCTGCTATAAAGCAGACAACAAGACGACCTTTACTGGGccctttat ttattttatactttaaaaagtgtcttttctttctgactgaCTTTTAAACT tgatctcttttttttttattcagatATGCAACAATCTAGAAAGTAGGATT GATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaattt aacaaGACTACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGCCAA CTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGATTTAAGTCCAGTTAA ATGCACAAATTTTATACGCACacacaaaaaagaaattttttaattgataC AACAACATTGTTATTTATACAATAGCTTCATTATTTTCCACACCAAAATA TtgtaaatactgtaaataaGATGATAcgttttagtttttgttttatatca tataaattattttattaagtATTACTTCTATGAACCTTGGGatggataaa aaatttttaaagttgaaGTCTGTTCtagtattttttttacaattttttgt aCAGTTTTTAGATGAATTTTAGTTCTGGTAGCTAAAATTACATTGACTGT GATAAAAATGAACCTTTTTGAGCCTAAATAATGAAgagatttttaataat tttgtaGAATTGAAAAGGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000833XLOC_000833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001598-exon-sc0000011-1491911889:738534..739317TCONS_00001598-exon-sc0000011-1491911889:738534..739317Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1510915933:738534..739317TCONS_00001598-exon-sc0000011-1510915933:738534..739317Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1575043694:738534..739317TCONS_00001598-exon-sc0000011-1575043694:738534..739317Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1491911889:739433..739546TCONS_00001598-exon-sc0000011-1491911889:739433..739546Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1510915933:739433..739546TCONS_00001598-exon-sc0000011-1510915933:739433..739546Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1575043694:739433..739546TCONS_00001598-exon-sc0000011-1575043694:739433..739546Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1491911889:739807..740355TCONS_00001598-exon-sc0000011-1491911889:739807..740355Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1510915933:739807..740355TCONS_00001598-exon-sc0000011-1510915933:739807..740355Clytia hemisphaericaexon
TCONS_00001598-exon-sc0000011-1575043694:739807..740355TCONS_00001598-exon-sc0000011-1575043694:739807..740355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:738534..740355 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.854885 0.937854 0.120993 0.118373 2.44983 1.93589 4.80852 7.20268 3.96218 6.69245 2.38181 4.41245 22.7073 11.2924 16.9789 20.5709 3.6569 6.00227 6.81572 8.74751 3.92238 1.66695 2.01633 1.82754 2.63883 2.25269 1.75833 3.8716 10.2907 8.94229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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