|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001598 ID=TCONS_00001598|Name=TCONS_00001598|organism=Clytia hemisphaerica|type=transcript|length=1447bp
tttttcaaaaaaaaattttgatggacgttttgttttgattgtcatCTTTT
CCTCTTTTGACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCT
AATATGGCATCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTT
AAATTCATGAATCATGTAATTAAATAAAGGTATGAGGTTATCATTGACGT
TGCATTGTttgtaaaacattttaaaaggcATTGCTGTAATTCTCGATTGA
TCATTTGTTGTCTTCTAATCGCTCGTCAAGGTGATTTGCACAAAAGGTTG
AGCTGAAGTAAAATTCCATGTGCAACAGCGTGAGTGGGACTTAGAGATTA
GAAAATAATTGGATTAAGATTTAGCGTGATAACATACAGGACAATATTAG
TATAAATTCGGCTGTTTTGAGTTGAGACACATCTGACATCATTATCCACA
CCACCACAACCAGACACACAGCGTTTTGAGTAAACCCTTGAATCGTTTTC
AGGAGAAGCAAATCATGGCAACAATGTTTATGGATACTTCAGAAGATCAA
TCTTTGAACGCAAAATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAA
ATCAAGTTCATCTTTTGAAGATACTACCACTACTTCTTCAACTACAAGTT
TTGATTTGACACGTACTTCTAGTATGAGCAGTAATTTGAATTATGACGAT
ACTTCAATCAAATTGATTGATGTTGAAACTCTTGGAAATGAAAGTGATGA
AAGTGGTGAATCTGACGAAAAGATGGATGAAAAGGAAAGTTCAACAGCAG
TAAGTTCAATTCCATTGGAAGAGAGAAGATTACGAAATCGTTTAGCTGCC
AGAAAATGTAGAGAAAAAAGGAAGCAACGCATAATGAATCTAGAAAAGat
ATGCAACAATCTAGAAAGTAGGATTGATATGTTGACAGCCGAAATTGAAG
GATTAGATGggcaaaaaaagaatttaacaaGACTACTGGAAAATCATAAT
TGCGTCCGACTCACTCCAAAGCCAACTGCTGTTATTAAGAATGCAGTCAT
GTCCAAGTGATTTAAGTCCAGTTAAATGCACAAATTTTATACGCACacac
aaaaaagaaattttttaattgataCAACAACATTGTTATTTATACAATAG
CTTCATTATTTTCCACACCAAAATATtgtaaatactgtaaataaGATGAT
AcgttttagtttttgttttatatcatataaattattttattaagtATTAC
TTCTATGAACCTTGGGatggataaaaaatttttaaagttgaaGTCTGTTC
tagtattttttttacaattttttgtaCAGTTTTTAGATGAATTTTAGTTC
TGGTAGCTAAAATTACATTGACTGTGATAAAAATGAACCTTTTTGAGCCT
AAATAATGAAgagatttttaataattttgtaGAATTGAAAAGGGTTT Run BLAST on NCBI transcript from alignment at sc0000011:738534..740355+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001598 ID=TCONS_00001598|Name=TCONS_00001598|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at sc0000011:738534..740355+ (Clytia hemisphaerica)
tttttcaaaaaaaaattttgatggacgttttgttttgattgtcatCTTTT
CCTCTTTTGACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCT
AATATGGCATCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTT
AAATTCATGAATCATGTAATTAAATAAAGGTATGAGGTTATCATTGACGT
TGCATTGTttgtaaaacattttaaaaggcATTGCTGTAATTCTCGATTGA
TCATTTGTTGTCTTCTAATCGCTCGTCAAGGTGATTTGCACAAAAGGTTG
AGCTGAAGTAAAATTCCATGTGCAACAGCGTGAGTGGGACTTAGAGATTA
GAAAATAATTGGATTAAGATTTAGCGTGATAACATACAGGACAATATTAG
TATAAATTCGGCTGTTTTGAGTTGAGACACATCTGACATCATTATCCACA
CCACCACAACCAGACACACAGCGTTTTGAGTAAACCCTTGAATCGTTTTC
AGGAGAAGCAAATCATGGCAACAATGTTTATGGATACTTCAGAAGATCAA
TCTTTGAACGCAAAATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAA
ATCAAGTTCATCTTTTGAAGATACTACCACTACTTCTTCAACTACAAGTT
TTGATTTGACACGTACTTCTAGTATGAGCAGTAATTTGAATTATGACGAT
ACTTCAATCAAATTGATTGATGTTGAAACTCTTGGAAATGAAAGTGATGA
AAGTGGTGAATCTGACGAAAAGATGGATGAAAAGGTAAAATTTTCAATCT
ACTAATCAAATTTTAATCGATCAATTTTTCCTAAAAGAAATCGATACAAA
TAATGATAACAACAAATTCTCAGAACTAATGATTCTTCTATCTTTACAGG
AAAGTTCAACAGCAGTAAGTTCAATTCCATTGGAAGAGAGAAGATTACGA
AATCGTTTAGCTGCCAGAAAATGTAGAGAAAAAAGGAAGCAACGCATAAT
GAATCTAGAAAAGGTAATAGAGCTTACATTTATTTATATTCGTATATggc
tttttgttaatttttactTCGTGATTCTGTACTTACTGTCTTCTTAAATA
CCTACAAAACTATGAGTATTTAGGATACAATAATGTTTTCCTTTTGTCCT
TGTTTCTGCTATAAAGCAGACAACAAGACGACCTTTACTGGGccctttat
ttattttatactttaaaaagtgtcttttctttctgactgaCTTTTAAACT
tgatctcttttttttttattcagatATGCAACAATCTAGAAAGTAGGATT
GATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaattt
aacaaGACTACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGCCAA
CTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGATTTAAGTCCAGTTAA
ATGCACAAATTTTATACGCACacacaaaaaagaaattttttaattgataC
AACAACATTGTTATTTATACAATAGCTTCATTATTTTCCACACCAAAATA
TtgtaaatactgtaaataaGATGATAcgttttagtttttgttttatatca
tataaattattttattaagtATTACTTCTATGAACCTTGGGatggataaa
aaatttttaaagttgaaGTCTGTTCtagtattttttttacaattttttgt
aCAGTTTTTAGATGAATTTTAGTTCTGGTAGCTAAAATTACATTGACTGT
GATAAAAATGAACCTTTTTGAGCCTAAATAATGAAgagatttttaataat
tttgtaGAATTGAAAAGGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001598-exon-sc0000011-1491911889:738534..739317 | TCONS_00001598-exon-sc0000011-1491911889:738534..739317 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1510915933:738534..739317 | TCONS_00001598-exon-sc0000011-1510915933:738534..739317 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1575043694:738534..739317 | TCONS_00001598-exon-sc0000011-1575043694:738534..739317 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1491911889:739433..739546 | TCONS_00001598-exon-sc0000011-1491911889:739433..739546 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1510915933:739433..739546 | TCONS_00001598-exon-sc0000011-1510915933:739433..739546 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1575043694:739433..739546 | TCONS_00001598-exon-sc0000011-1575043694:739433..739546 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1491911889:739807..740355 | TCONS_00001598-exon-sc0000011-1491911889:739807..740355 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1510915933:739807..740355 | TCONS_00001598-exon-sc0000011-1510915933:739807..740355 | Clytia hemisphaerica | exon |
| TCONS_00001598-exon-sc0000011-1575043694:739807..740355 | TCONS_00001598-exon-sc0000011-1575043694:739807..740355 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:738534..740355 + |
Blast
The following BLAST results are available for this feature:
|
