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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001587 ID=TCONS_00001587|Name=TCONS_00001587|organism=Clytia hemisphaerica|type=transcript|length=1639bp
GCTTGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTAT
GTGAAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAAC
CTGGTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGAT
TGTACGAAGAGAAAAGATACAGACTGAAATACAGGTATGATAATATGAAG
ACATACAAACTGGACATCGCTAACATAATGAAGgtgAAGTGGTTCATTAT
CATAACGATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAA
AACAGTATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGC
ATGTAGTTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACA
ACTTCTTCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaag
aatttaattatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaa
tttgactttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATC
AACAAGATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaac
caagATCAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACG
GGATTTCAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCT
ATACGCACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATG
ACTTTCAAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaatt
gagaaataagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTG
TTTAATTGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGT
TTAATCTGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAAC
AACTAGCTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgta
aatttatttattaatgaagacaaagtcaaaaaaaattctcttaaaattat
aaaaatttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGA
TAtgactttcaatttcaattttcccctatttttcaatttttgacatacAA
TTTTCTATCCAAcaaagacaaatgaaattttcagggaagacttaaaattt
aatttttacccttggtgaaaattatacatttgtatgttcatttaaaatga
ctttaTGACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATT
TTGATAGTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTC
GTTTTACCCTCTCATCAAAATggcattattttttcatttcataggtTAAG
TTTTGTTCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGC
CATTTCTTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAA
TGGTGCAGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTG
GTTTTCAGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTT
GTAGAATATAATATGATCAATTAAATAATGGAAATGAAA Run BLAST on NCBI transcript from alignment at sc0000011:524711..526496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001587 ID=TCONS_00001587|Name=TCONS_00001587|organism=Clytia hemisphaerica|type=transcript|length=1786bp|location=Sequence derived from alignment at sc0000011:524711..526496+ (Clytia hemisphaerica)
GCTTGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTAT
GTGAAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAAC
CTGGTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGAT
TGTACGAAGAGAAAAGATACAGACTGAAATACAGGTATGATAATATGAAG
ACATACAAACTGGACATCGCTAACATAATGAAGGTActagatatttcaaa
ataatgattttctaaaaacttttgattttctttacacaaaaaatggatcc
taataaaaaaacaattttgtgtATTACATGATATTTCAAGATACAGTAAT
TCTCAAAACTCtctacattttcatttttaggtgAAGTGGTTCATTATCAT
AACGATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAAAAC
AGTATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGCATG
TAGTTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACAACT
TCTTCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaagaat
ttaattatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaattt
gactttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATCAAC
AAGATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaaccaa
gATCAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACGGGA
TTTCAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCTATA
CGCACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATGACT
TTCAAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaattgag
aaataagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTGTTT
AATTGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGTTTA
ATCTGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAACAAC
TAGCTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgtaaat
ttatttattaatgaagacaaagtcaaaaaaaattctcttaaaattataaa
aatttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGATAt
gactttcaatttcaattttcccctatttttcaatttttgacatacAATTT
TCTATCCAAcaaagacaaatgaaattttcagggaagacttaaaatttaat
ttttacccttggtgaaaattatacatttgtatgttcatttaaaatgactt
taTGACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATTTTG
ATAGTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTCGTT
TTACCCTCTCATCAAAATggcattattttttcatttcataggtTAAGTTT
TGTTCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGCCAT
TTCTTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAATGG
TGCAGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTGGTT
TTCAGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTTGTA
GAATATAATATGATCAATTAAATAATGGAAATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001587-exon-sc0000011-1491911889:524711..524943 | TCONS_00001587-exon-sc0000011-1491911889:524711..524943 | Clytia hemisphaerica | exon |
| TCONS_00001587-exon-sc0000011-1510915933:524711..524943 | TCONS_00001587-exon-sc0000011-1510915933:524711..524943 | Clytia hemisphaerica | exon |
| TCONS_00001587-exon-sc0000011-1575043694:524711..524943 | TCONS_00001587-exon-sc0000011-1575043694:524711..524943 | Clytia hemisphaerica | exon |
| TCONS_00001587-exon-sc0000011-1491911889:525091..526496 | TCONS_00001587-exon-sc0000011-1491911889:525091..526496 | Clytia hemisphaerica | exon |
| TCONS_00001587-exon-sc0000011-1510915933:525091..526496 | TCONS_00001587-exon-sc0000011-1510915933:525091..526496 | Clytia hemisphaerica | exon |
| TCONS_00001587-exon-sc0000011-1575043694:525091..526496 | TCONS_00001587-exon-sc0000011-1575043694:525091..526496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:524711..526496 + |
Blast
The following BLAST results are available for this feature:
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