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TCONS_00001587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001587
Unique NameTCONS_00001587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001587 ID=TCONS_00001587|Name=TCONS_00001587|organism=Clytia hemisphaerica|type=transcript|length=1639bp
GCTTGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTAT
GTGAAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAAC
CTGGTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGAT
TGTACGAAGAGAAAAGATACAGACTGAAATACAGGTATGATAATATGAAG
ACATACAAACTGGACATCGCTAACATAATGAAGgtgAAGTGGTTCATTAT
CATAACGATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAA
AACAGTATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGC
ATGTAGTTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACA
ACTTCTTCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaag
aatttaattatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaa
tttgactttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATC
AACAAGATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaac
caagATCAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACG
GGATTTCAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCT
ATACGCACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATG
ACTTTCAAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaatt
gagaaataagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTG
TTTAATTGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGT
TTAATCTGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAAC
AACTAGCTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgta
aatttatttattaatgaagacaaagtcaaaaaaaattctcttaaaattat
aaaaatttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGA
TAtgactttcaatttcaattttcccctatttttcaatttttgacatacAA
TTTTCTATCCAAcaaagacaaatgaaattttcagggaagacttaaaattt
aatttttacccttggtgaaaattatacatttgtatgttcatttaaaatga
ctttaTGACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATT
TTGATAGTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTC
GTTTTACCCTCTCATCAAAATggcattattttttcatttcataggtTAAG
TTTTGTTCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGC
CATTTCTTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAA
TGGTGCAGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTG
GTTTTCAGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTT
GTAGAATATAATATGATCAATTAAATAATGGAAATGAAA
Run BLAST on NCBI

transcript from alignment at sc0000011:524711..526496+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001587 ID=TCONS_00001587|Name=TCONS_00001587|organism=Clytia hemisphaerica|type=transcript|length=1786bp|location=Sequence derived from alignment at sc0000011:524711..526496+ (Clytia hemisphaerica)
GCTTGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTAT GTGAAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAAC CTGGTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGAT TGTACGAAGAGAAAAGATACAGACTGAAATACAGGTATGATAATATGAAG ACATACAAACTGGACATCGCTAACATAATGAAGGTActagatatttcaaa ataatgattttctaaaaacttttgattttctttacacaaaaaatggatcc taataaaaaaacaattttgtgtATTACATGATATTTCAAGATACAGTAAT TCTCAAAACTCtctacattttcatttttaggtgAAGTGGTTCATTATCAT AACGATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAAAAC AGTATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGCATG TAGTTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACAACT TCTTCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaagaat ttaattatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaattt gactttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATCAAC AAGATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaaccaa gATCAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACGGGA TTTCAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCTATA CGCACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATGACT TTCAAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaattgag aaataagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTGTTT AATTGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGTTTA ATCTGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAACAAC TAGCTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgtaaat ttatttattaatgaagacaaagtcaaaaaaaattctcttaaaattataaa aatttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGATAt gactttcaatttcaattttcccctatttttcaatttttgacatacAATTT TCTATCCAAcaaagacaaatgaaattttcagggaagacttaaaatttaat ttttacccttggtgaaaattatacatttgtatgttcatttaaaatgactt taTGACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATTTTG ATAGTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTCGTT TTACCCTCTCATCAAAATggcattattttttcatttcataggtTAAGTTT TGTTCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGCCAT TTCTTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAATGG TGCAGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTGGTT TTCAGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTTGTA GAATATAATATGATCAATTAAATAATGGAAATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000828XLOC_000828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001587-exon-sc0000011-1491911889:524711..524943TCONS_00001587-exon-sc0000011-1491911889:524711..524943Clytia hemisphaericaexon
TCONS_00001587-exon-sc0000011-1510915933:524711..524943TCONS_00001587-exon-sc0000011-1510915933:524711..524943Clytia hemisphaericaexon
TCONS_00001587-exon-sc0000011-1575043694:524711..524943TCONS_00001587-exon-sc0000011-1575043694:524711..524943Clytia hemisphaericaexon
TCONS_00001587-exon-sc0000011-1491911889:525091..526496TCONS_00001587-exon-sc0000011-1491911889:525091..526496Clytia hemisphaericaexon
TCONS_00001587-exon-sc0000011-1510915933:525091..526496TCONS_00001587-exon-sc0000011-1510915933:525091..526496Clytia hemisphaericaexon
TCONS_00001587-exon-sc0000011-1575043694:525091..526496TCONS_00001587-exon-sc0000011-1575043694:525091..526496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:524711..526496 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225025 0.241933 0.533724 0.368488 0.535314 0.634519 3.11624 4.09099 7.96456 22.2631 7.76686 30.5444 80.4928 92.0641 196 192.14 94.2771 76.4634 152.908 415.022 86.7292 81.0889 196.7 249.668 282.185 383.981 764.578 948.642 36.0937 50.2557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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