TCONS_00001585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001585
Unique NameTCONS_00001585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001585 ID=TCONS_00001585|Name=TCONS_00001585|organism=Clytia hemisphaerica|type=transcript|length=486bp
TTATAACTGAAAGATGTTGATTATCGAATTCACTTTTATTGGAATGTACT
TCATCTTAATGGTTTGCACAGGTATCAAGCTATTTATCTGACACTGCGTA
CACCACGATGAAATGTTTGCTTCCACAAGACACAAGTTCAAAGATGTTGG
AAGTTTCACCGAAAGTTGTCCGTCACAATGTTTGTAATAAAATACAAGAA
TGGTTGTCTATGAACCGCGAGTTGTTCGTTGCTGGTTTGGAGTCGTTATA
TAATCGCCATTTGAATCACGTGATCAAAGCAAATAAAGAAGAAAGTTTGT
TAGTTTTTGATGATGTCATGTTGACTAGGTAACATAAATTTGGGGTTGAG
GCCATGAGGCAGTTCctttttgtcgattttttttGCCCTGTAAAGTCTTT
GGGTTTAATAcagtttgaaaatgattttatgtttctaaaaatttgaaatt
gacaGCTTATTATGAAGTCAAGAAAAGTGGAAATTT
Run BLAST on NCBI

transcript from alignment at sc0000011:361340..362673+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001585 ID=TCONS_00001585|Name=TCONS_00001585|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0000011:361340..362673+ (Clytia hemisphaerica)
TTATAACTGAAAGATGTTGATTATCGAATTCACTTTTATTGGAATGTACT
TCATCTTAATGGTTTGCACAGGTATCAAGGTGCGTATTTTCTGTTTGCCT
CGGAATCATTTGGACTTTAATTAAATCCCCGCATTCCTTATTCCACATAT
TACTTTGCTTCTTTCAGCTATTTATCTGACACTGCGTACACCACGATGAA
ATGTTTGCTTCCACAAGACACAAGTTCAAAGGTTTGTGAAATATTTCTTC
CCAGTCATATTGCCTGTGGCTATTTCCCAATACCTACTATTTACGTCTGC
TACCTACGAAATACATTGTGTTGGCTTCGcatttaaaataatattttttc
agcAACAATAGATCTTTCTCAATAATAACTTTTCAAACTATCACGACTGT
TGTTGGTTTTGAACTGACTTTCTTACTGGGGCCCTGATTTGATGTTTGAC
TGAAATGTTGTTGGTTTTGGACCTAGACAGAAGACAAAATTTTACATGAG
TAtcgaaaaatcttcaaatattttcgaaatattttcccTCTAAGATAGGT
CTAAGAATCGAAGTTTGTTCAGACTCACTTGGACTTTAGTTTTCACATAA
CCAAAACGGGATGAGcttgagtttttacaagatacttaactaattggtca
tttaaagtgatagagatgacgcgttctttagaaaaagtaatgagattctt
ttattacatcttaacgaccaaccaaatcaaataagaGCTTGTAAAAACTC
CAGCTTGTCCCAACCAAAACAGGGAAATCGAACAGCTTCTATCGTTTATA
TACTTTCTTTATTTCCAGATGTTGGAAGTTTCACCGAAAGTTGTCCGTCA
CAATGTTTGTAATAAAATACAAGAATGGTTGTCTATGAACCGTGAGTCTA
AAAAACCCTTTTCATTTAATGTATGTGGTGTACATAGGTCTCCCTATTTT
TACACATACCAAACACCTTTTTTGATTTCTCAGATATCCAGTCAAGGGAA
AAAGATCAGGAATATTTATACAATGAATCAACACaacctttttcaatttt
cgtccACATTTTAGGCGAGTTGTTCGTTGCTGGTTTGGAGTCGTTATATA
ATCGCCATTTGAATCACGTGATCAAAGCAAATAAAGAAGAAAGTTTGTTA
GTTTTTGATGATGTCATGTTGACTAGGTAACATAAATTTGGGGTTGAGGC
CATGAGGCAGTTCctttttgtcgattttttttGCCCTGTAAAGTCTTTGG
GTTTAATAcagtttgaaaatgattttatgtttctaaaaatttgaaattga
caGCTTATTATGAAGTCAAGAAAAGTGGAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000826XLOC_000826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001585-exon-sc0000011-1491911889:361340..361418TCONS_00001585-exon-sc0000011-1491911889:361340..361418Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1510915933:361340..361418TCONS_00001585-exon-sc0000011-1510915933:361340..361418Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1575043694:361340..361418TCONS_00001585-exon-sc0000011-1575043694:361340..361418Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1491911889:361507..361570TCONS_00001585-exon-sc0000011-1491911889:361507..361570Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1510915933:361507..361570TCONS_00001585-exon-sc0000011-1510915933:361507..361570Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1575043694:361507..361570TCONS_00001585-exon-sc0000011-1575043694:361507..361570Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1491911889:362158..362230TCONS_00001585-exon-sc0000011-1491911889:362158..362230Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1510915933:362158..362230TCONS_00001585-exon-sc0000011-1510915933:362158..362230Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1575043694:362158..362230TCONS_00001585-exon-sc0000011-1575043694:362158..362230Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1491911889:362404..362673TCONS_00001585-exon-sc0000011-1491911889:362404..362673Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1510915933:362404..362673TCONS_00001585-exon-sc0000011-1510915933:362404..362673Clytia hemisphaericaexon
TCONS_00001585-exon-sc0000011-1575043694:362404..362673TCONS_00001585-exon-sc0000011-1575043694:362404..362673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:361340..362673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17468	0.937142	0.642364	1.46556	0.173409	0.385336	4.25237	3.58227	0.000664216	0	2.61948	1.38904	1.95675	2.05878	0.1403	0.379191	1.49515	1.02768	2.17023	1.73917	0.496893	0.327914	5.09083	3.12578	26.6839	26.8701	0.998711	0.673883	2.03271	0.905308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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