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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001582 ID=TCONS_00001582|Name=TCONS_00001582|organism=Clytia hemisphaerica|type=transcript|length=3397bpRun BLAST on NCBI protein sequence of TCONS_00001582-protein >TCONS_00001582-protein ID=TCONS_00001582-protein|Name=TCONS_00001582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=879bp MDDFPSMQNNRTQASKNPRRITATTVGTIKTNKTPQRIETSNSTHFTSQQRun BLAST on NCBI transcript from alignment at sc0000011:318242..362673+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001582 ID=TCONS_00001582|Name=TCONS_00001582|organism=Clytia hemisphaerica|type=transcript|length=44432bp|location=Sequence derived from alignment at sc0000011:318242..362673+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:318242..362673+ >TCONS_00001582 ID=TCONS_00001582|Name=TCONS_00001582|organism=Clytia hemisphaerica|type=CDS|length=26400bp|location=Sequence derived from alignment at sc0000011:318242..362673+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001582 vs. Swiss-Prot (Human)
Match: CDAN1 (Codanin-1 OS=Homo sapiens GN=CDAN1 PE=1 SV=4) HSP 1 Score: 250.366 bits (638), Expect = 3.798e-68 Identity = 200/736 (27.17%), Postives = 333/736 (45.24%), Query Frame = 1
Query: 1051 EILNLDKVAEKKTLDMLSEIYTYICLWNMVPNVTLELYFLFTVLTVR-----------LSTSALDKLLHP-FPNIECHIYFAVTCINKMKNLFIILDRKALTLLFENSRLQFFTKADFLEYLEQEIALDDSFNLTSSYLNSMKSPNT-GIAFQTDSDNRKSFISDRHFYSFSKKRDAFYSIVRHWEENIGDPEWNMTTFLTKKVHEFMKSSQDGLNNDLQFARLFVGQLLEMHKNQVGDKT----EEPDTSDGVLKELKKRDPLRFQSLQNRLTGPSSTCDPCPKLTFTKVEEFFKDFIRIADSYTFNKCLIHVFVTKLKTLDSNTFGLHQHINTELNRSDF-SDTLWQDIKTTIS----ELRLCAKFLGYIIFSPYHVI--TDTKEMDSS----REMLSESLHLISFLENSVQNHRLLVTLPWVVDLLSMADKNAFLLDSYKEPLMFLLQIYKQL--------SHCLRXXXXXXXXXXXXXHIG------WLFDQNPSYQFDFYESTFSLQKPIVNYSRNSTVNTIGLDDIVVVDKSFVHMICPYLKVIKKPLSDFKKKVRLDNSTGTFRKITPVRSTDILTISAKS--KLKNQLLDGFLKYAPNHVKDCINYVTDRLFINLKHFICEHIFVQCQQNALDEMKNDFVTSLDENGEINKDNLKVANQKVYADCLENSLLQVRDKCQDYIKRYLSDTAYTTMKCLLPQDTSSKMLEVSPKVVRHNVCNKIQEWLSMN 3126
E + +V+ ++ L++++ +Y+ N+VPN+ LEL+F+F +LT R LS + LD L P F +I ++FAV + + LD+ L LL EN RL F+ A + L ++ + + ++ + P+T ++FQ ++DNR +F SDR F++F K+RD FY ++R WE++ +P W+ L ++ M ++ F RLF QLL+M ++ G E PD VL L R LQ RL P S+ PCP TF + FF+DFI A S+ FN+ L+ K++ L N L QH E N D SD WQ + + LRL AKFLG++ F PY T E+ S R + L + + L+ +Q R ++T+PW+V+ LS AD LL+ Y++ LL++++ L C + L I + ++ PSY F+ ++ GLD+ VVD+ ++ CPY+ ++K L+ + + RKITP +T + +++ L+ QL F P ++ + +V +R+ N I + + A ++ VT +E G+ + + +Q +L R+ CQ + ++ LLP++T + +L + + K WLS N
Sbjct: 289 EPADPARVSSRQRLELVALVYSSCIAENLVPNLFLELFFVFQLLTARRMVTAKDSDPELSPAVLDSLESPLFQSIHDCVFFAVQVLECHFQVLSNLDKGTLKLLAENERLLCFSPA-------LQGRLRAAYEGSVAKVSLVMPPSTQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDHHEEPGWDFEKGLGSRIRAMMGQLSAACSHS-HFVRLFQKQLLQMCQSPGGAGGTVLGEAPD----VLSMLGADKLGRLWRLQERLMAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIQEL--NGLALPQH---EPNDEDGESDVDWQGERKQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTGELQDSILALRSQVPPVLDVRTLLQRGLQARRAVLTVPWLVEFLSFADHVVPLLEYYRDIFTLLLRLHRSLVLSQESEGKMCFLNKLLLLAVLGWLFQIPTVPEDLFFLEEGPSYAFEV----------------DTVAPEHGLDNAPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGG-FMRKITPTTTTSLGAQPSQTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVRQAESLLQEQLVTQGEEGGDPAQLLEILCSQLCPHGA--QALALGREFCQR--------KSPGAVRALLPEETPAAVLSSAENIAVGLATEKACAWLSAN 980 The following BLAST results are available for this feature:
BLAST of TCONS_00001582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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