TCONS_00001579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001579
Unique NameTCONS_00001579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001579 ID=TCONS_00001579|Name=TCONS_00001579|organism=Clytia hemisphaerica|type=transcript|length=916bp
AAAATGTGCCAGAAAAGCCAAAATCCTGattaatttcttttgtaaaagct
AAAATGTTACGTAATTTGATCTGGAAAAACCAACAATTATTCTTGAGGCC
ATCACAATCCCAATTATTGAAGCCTATTTTCAATTTACACACAACATGTA
TAAAAAGTGGAACTCATGATTATGAAGCGGTAGATGTCTTGTTAAATGCA
AAGCGACATAAAGAAGCAACAGGTAATGAATCGATTCTCAACCAAGCAGC
ATCGCGATCTGGAGCTGTTGTTCGATGGAAGAAAGTGGAGGGTGAAATGC
TTCTGGATGAAGACCCAGTACTAGTTGTTGGTCGCCCATTTCAAATTAAA
GCTGCAACTGATGTTTTGTTGAATGGGGTTGTGGAAGATACAGAAAATGT
AGATAGCCAGGATGAGCGTTTAGTATGGCATGGCTATAAACGTAATTTTA
AAGGACAATTTCCCCCTGAAAAACCAAGAAAGACTTGTATCCGTAATAAT
GGAAATAGAGTATCAGGAAATCCATGTCCACTTTGCCAGATTAAATTGAA
GTCAAGCTATAATGTACATTTTACTGACGTACAGCTACTTGAGCAGTTTA
TTTGCCCGCACACTGCTGAAATTCTTTCACCCAAGGTGACAGGTATCTGT
AAGAAACAACACCTTCAAGTTGAAGCAGCTATTAAGAAAGCTCGAAATTT
TGGTTATTTACCTTTTACATTGCCACTACATTCAAAGGAACAAGGAAAAC
ATATACCAGCCGGTATACCaacagataaaaaaatcaaagtgaaaatgcac
tgaaattaGTATTGTTAATCAGATTTTGTATACTTAccatgttttatttt
ttgattcatATTTTAATTAGATAAATCTTAAAATAAGCCAAAAAGCTTTT
TATTCTGTTTCATTTC
Run BLAST on NCBI

protein sequence of TCONS_00001579-protein

>TCONS_00001579-protein ID=TCONS_00001579-protein|Name=TCONS_00001579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MLRNLIWKNQQLFLRPSQSQLLKPIFNLHTTCIKSGTHDYEAVDVLLNAK
RHKEATGNESILNQAASRSGAVVRWKKVEGEMLLDEDPVLVVGRPFQIKA
ATDVLLNGVVEDTENVDSQDERLVWHGYKRNFKGQFPPEKPRKTCIRNNG
NRVSGNPCPLCQIKLKSSYNVHFTDVQLLEQFICPHTAEILSPKVTGICK
KQHLQVEAAIKKARNFGYLPFTLPLHSKEQGKHIPAGIPTDKKIKVKMH
Run BLAST on NCBI

transcript from alignment at sc0000011:307298..315693+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001579 ID=TCONS_00001579|Name=TCONS_00001579|organism=Clytia hemisphaerica|type=transcript|length=8396bp|location=Sequence derived from alignment at sc0000011:307298..315693+ (Clytia hemisphaerica)
AAAATGTGCCAGAAAAGCCAAAATCCTGattaatttcttttgtaaaagct
gTAAGTAAGTTTTCGCTGGTAAGTTTGTAGACCTGACTTTCAATTGTGTC
GAAATTTGTTCTCTCAACAAGCTGTATTATTGCTCCAATATGTGAGCTGC
AAAAAACTGTGTGTTTTGTTTAAACAGTTAGTTAGAGTTACATCAACAAC
AGATCAacatgccaaaaacattttgttcaatcatcttcacttcaagatag
gccaccatagaacgAATTTCCTTTTATAggtgaaccatattcatgtcgTG
GCTTTCagcattagtcaaaaaagtcattaaaattgttTAACCTctgcaaa
aaatcccgacgatgAGAGTGCGCACCATttaagttgaagttggtttgata
ttctacgtttgacgtttgatattcgattgatattcgtttgatattctcaa
atttgcgttttgaagtttttgtgactacttttggaactggaaactattgg
aagccatcaataatagagtttattctcaagcagttagtcacactaggaaa
tctagcttttagaaaaaacaacatcagtcatctacaggatatatttcaac
aacaaggatgagagttacctgaatcaagtttgcaagacaatattaattaa
aacttgaaagttggaaacaaaataaaacgtgcaNttgcggtgcatttttt
tgcttgagagtcaagtaaacgatatagcgcttttgcagcattaatctttg
atacgcattttggcgggacgctagtgtggctaactgtcAAGGGTAGGGTG
CGCACTCATCGGATTTTTGGCGCGGAACGaagaagaatttacaaaaatga
acttcaaggcattagtacttaccgtgagaggtcctaaagccgacagccca
gcttaattccgacaccccaaataactgttatgaaaaaaaattctatgttt
acaaacattccctctccaagttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtttaaatcatccaaatctgttcattctt
ttttttaaatcaatcaggaattatcagggaaacaagtaaaaaaaactgca
tcaaggtatctattttctttccaaagatatNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaattctcgacccacattgaaacaaatggctgtc
gctattgagctggttcatcttttcaatcgcggtttttttagtaaacccag
ggtaagattaggctacaaccTATCACAacctgctttatttgaaaatctac
aggccgtctggaatttcgaaaaataagaagaaattttttaacaagattgc
ggattttttcatttaagcaccattcaccatctgaaagctgaggatttcag
ctttctagtggtgaaatttggataactttggaactacttaaccaatttta
acaaatggcccctcatttttctcacgaaggtaaggactttcaaataaaat
tacagtagtttggttttcaaaatttgaggggaaaattttggcctgtccac
cctaacAATGTTTTCCTTTAGtaagattgaccattttgttgttttggatT
TGAGCGAAATTTctggagcccaacttgtcattttggccgaaatgaggttt
aacggttacaaatttttagagggagcacgctgtgacggagagcgctgaaa
ttttgcacacacacccttgagaataaactctattggcttcaaatgttttc
cagttccaaagataaccgctctcccccacaggagcccaacttgtcatttc
ggccgaaatgaggtttaacggttacaaatttttagagggagcacgctgcg
acagagagcgctgaaattttgcacacacacccttgagaataaactctatt
ggcttttccaatagtttccagttccaaagataacagctctcccccacagg
agcccaacttgtcatttcggctgaaatgaggtttgacagttacaaatttt
tagagggagcacactgcgacggagagcgctgaaattttgcacagacactc
ttgagaataaactctattggctagcttccaatagtttccaattccaaaga
taaccccTCTCCCCCACGGTCAccctcccccacaggagcccaacatgtca
tttcggccgaaatgaggtttgacgattacaaatttttagagggagcacac
tacgacggagagcgctgaaattttgcacagacacccttgaTAGGGTGGAC
Aggacaaaattttcccctcaattttaaaaaaccaaactaattttatttga
aagtccttacctttgtgagaaaaatgaggggtcatttatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtggttaagtattcccaa
agttattccattttcaaaacacaaaaaaatcaccttttcaaagaatcgcc
tccttacaccacgccagcaagaaataattttcagaaccaaaatcgcgcca
aaaatggcggatgaaatctagtcttccgtgtggcggggtgtggggagttt
tgccgGTGCGGTCTAAAAATcagcccgatgactgttaaactttagcctat
cgctaatgagctggaaatgatagctaaaaacaaattttaccaatgaaaag
ctgaaacccttagctttccaacgatatatgatagccctgataaaaatttc
aggaaagtgccgaaaaatcgaaatttcttcttttttctcgatttaaagac
agcccgtagattatcgaaaaggctaccacgtgacatactaaagtactatc
tttcccgcgagtctataactaatccagctcaatagcgatagctatttgaa
aaatggtggtcaaggtAGACGGTGGTGCCACAAATTCCGAGTTGCCATTT
TTTTACCTTGATGTCTAATAAATGGTATACCAGCCATATTgaaccaattc
taataaatgacccctcatttttctcacaaaggtaaggactttcaaagaaa
aattagtttggtttctaaaaattgagggggAAATCTTTGCCTGTTCACCC
TATCAGTGGTATGTATTTAACAGTTACATCAacatgccaaaaacattttg
ttcaaccacctttaCTTCAAGGATAGACCAccatagaatgatagaatgaa
cttccttttacaGGATGAAccattcatgtggctttcagccttgaactcca
tcacagagcctatttgagatattacTAACTAGCccggagaaaaattttaa
acctttattatttgaatgcatgcctttttaatataatactcaaatataaa
aaaattaaaaaattttaacttgatcaTTAGTTAGGGTGGACatgccaaaa
ttttcccctcaatttttagaaaccaaactaattttatttgaaaatcctTA
CCTTTgtaagaaaaatgaggggtcatttattagaattggttaagtattcc
caaagttattcaattttctaaacacaaaaaaatcaccttttcaaagaatc
gcctccttacaccacgccagcaagaaataattttcggaagcaccaaaatc
gcgccaaaaatggcggatgaaatctagtcttccgtgtggcggaGTGTTGG
Gaggtgcggtctgaaaatcggcccgatgactgttaaactttagcttatct
ctaatgagctggaaatgatagctaaaaacaaatttcaccactagaaagct
gaaatcctcagctttcagatggtgtaaggtgcttaattaaaaaaatctgc
aatcttgttgaaaaatcgcaatttcttttatttttcgaaaattccagaCG
GACTGcagatttttaaataaatcgcaatatgatagattgtagcctaatct
taccctggtttataaaaaaaaccgtattgaaaagatgaaccagctctaTA
GCTTCAGCCATTTGTTTCCATGTGGGTcaagaattttccggtgccgtggt
cagcgctaagtcgtgttttcaccttgacgtcgaaaaacatcaatatcttt
ggaaagaaaatagatacctggatgcagttttttttacttgttttcatttt
ttcagttttttgttcattttcatttgtttatcttttttgcaactgtttgc
aatgtcagctttttccataaattatgcgcgcatagaaaaatatcgaaaac
cccgcgaaaattctgctcagtgactgggcgcgtattGGCCAATTAGACAA
ATATCCCTGCAGAagagttagttggaccagaccgtaaaccagagacaaaa
ttataaaaaactagatggtgaaatagtttacggtctggatatccaggcta
caatGGAACTAAATCAAACTCCATCAAATGATTTAATTTCAATCAAGATA
AATGAACCTAAtcaaacactcacaatttttgaagcaaagtATTAAAAATT
GGATAATTTTCGGACCTAGAAAAAAACGTTAGTAATGGGGGgacttgata
agttctatctatcaattaactaaaaatcgattcacttgAAAACTGTAGGa
aattcgaagggcaaattttttgtcaattctacaccctattagtagcatca
ggggggggggggcagggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGGGGGGGGCagggtccaggataccaaccAAGGGCCCAACAacctga
cttttcgagatttgaaagtagtagacaccaccaccccctaaatCAGTATC
GATACGAACTTGAAAATCccgttttttctgaaaaagggggaaCCACCCCC
CCTAAATTGGCAATAAATAAAAATGCAAGAAGTTATGTGCATAGGATACT
GCATACAAGGGACGCTAAACAAAATCTGtggatatttttaatcaaagaac
attcctcttattaatcacttatattatgtaccacactttagactcctgaa
aatgaaaacaagtttttttcattctaacacaacgtaaattaagtttcttg
cactaaattggcaaaatgtatcaaattcataaaactagtTGATAAACTAG
ACTAGATAAAAAACTCATTGTATTAGGCACGCCTAGAGTCTTTGTAATAG
CCTATATGATGAACGTTATGtacagaaaaattttatcacgactaaaaaag
ctctaagatctgctaagacttgatacagtttgttcaactctagttttgaa
tgaattttggttgattgaaaggattgagagcagcaaaagttataataaaa
ataaaaatggcggatgaaatctagtcttccgtgtggcggaGTGTTGGGAG
TTTTGccggtgcggtctgaaaatcggcccgatgactgttaaactttagct
tatcgctaatgagctggaaatgatagctaaaaacaaatttcaccactagN
gcccgatgactgttaaactttagcttatcgctaatgagctggaaatgata
gctaaaaacaaatttcatcaCTAGAAagctagacggtgaaatagtttacg
gtctggatatccaggctagttttacttttgaattttctttcaaaaaatgt
taaatagtTAAGAGAGGAAGGAGCAATTTGTATGTTGTATCTTGTATGTA
TATACTGCAAGCATGagaatttcaagtaattttttttagtaaccCTTTTA
ATTTAATTCACCCCTTCCTGGTATCTTTAGAAAATGTTACGTAATTTGAT
CTGGAAAAACCAACAATTATTCTTGAGGCCATCACAATCCCAATTATTGA
AGCCTATTTTCAATTTACACACAACATGTATAAAAAGTGGAACTCATGAT
TATGAAGCGGTAGATGTCTTGTTAAATGCAAAGCGACATAAAGAAGCAAC
AGGTAATGAATCGATTCTCAACCAAGCAGCATCGCGATCTGGAGCTGTTG
TTCGATGGAAGAAAGTGGAGGGTGAAATGCTTCTGGATGAAGACCCAGTA
CTAGTTGTTGGTCGCCCATTTCAAATTAAAGCTGCAACTGATGTTTTGTT
GAATGGGGTTGTGGAAGATACAGAAAATGTAGATAGCCAGGATGAGCGTT
TAGTATGGCATGGCTATAAACGTAATTTTAAAGGACAATTTCCCCCTGAA
AAACCAAGAAAGACTTGTATCCGTAATAATGGAAATAGAGTATCAGGAAA
TCCATGTCCACTTTGCCAGATTAAATTGAAGTCAAGCTATAATGTACATT
TTACTGACGTACAGCTACTTGAGCAGTTTATTTGCCCGCACACTGCTGAA
ATTCTTTCACCCAAGGTGACAGGTATCTGTAAGAAACAACACCTTCAAGT
TGAAGCAGCTATTAAGAAAGCTCGAAATTTTGGTTATTTACCTTTTACAT
TGCCACTACATTCAAAGGAACAAGGAAAACATATACCAGCCGGTATACCa
acagataaaaaaatcaaagtgaaaatgcactgaaattaGTATTGTTAATC
AGATTTTGTATACTTAccatgttttattttttgattcatATTTTAATTAG
ATAAATCTTAAAATAAGCCAAAAAGCTTTTTATTCTGTTTCATTTC

Coding sequence (CDS) from alignment at sc0000011:307298..315693+

>TCONS_00001579 ID=TCONS_00001579|Name=TCONS_00001579|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000011:307298..315693+ (Clytia hemisphaerica)
ATGTTACGTAATTTGATCTGGAAAAACCAACAATTATTCTTGAGGCCATC
ACAATCCCAATTATTGAAGCCTATTTTCAATTTACACACAACATGTATAA
AAAGTGGAACTCATGATTATGAAGCGGTAGATGTCTTGTTAAATGCAAAG
CGACATAAAGAAGCAACAGGTAATGAATCGATTCTCAACCAAGCAGCATC
GCGATCTGGAGCTGTTGTTCGATGGAAGAAAGTGGAGGGTGAAATGCTTC
TGGATGAAGACCCAGTACTAGTTGTTGGTCGCCCATTTCAAATTAAAGCT
GCAACTGATGTTTTGTTGAATGGGGTTGTGGAAGATACAGAAAATGTAGA
TAGCCAGGATGAGCGTTTAGTATGGCATGGCTATAAACGTAATTTTAAAG
GACAATTTCCCCCTGAAAAACCAAGAAAGACTTGTATCCGTAATAATGGA
AATAGAGTATCAGGAAATCCATGTCCACTTTGCCAGATTAAATTGAAGTC
AAGCTATAATGTACATTTTACTGACGTACAGCTACTTGAGCAGTTTATTT
GCCCGCACACTGCTGAAATTCTTTCACCCAAGGTGACAGGTATCTGTAAG
AAACAACACCTTCAAGTTGAAGCAGCTATTAAGAAAGCTCGAAATTTTGG
TTATTTACCTTTTACATTGCCACTACATTCAAAGGAACAAGGAAAACATA
TACCAGCCGGTATACCaacagataaaaaaatcaaagtgaaaatgcactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000825XLOC_000825Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001579-proteinTCONS_00001579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001579-exon-sc0000011-1491911889:307298..307347TCONS_00001579-exon-sc0000011-1491911889:307298..307347Clytia hemisphaericaexon
TCONS_00001579-exon-sc0000011-1510915933:307298..307347TCONS_00001579-exon-sc0000011-1510915933:307298..307347Clytia hemisphaericaexon
TCONS_00001579-exon-sc0000011-1575043694:307298..307347TCONS_00001579-exon-sc0000011-1575043694:307298..307347Clytia hemisphaericaexon
TCONS_00001579-exon-sc0000011-1491911889:314828..315693TCONS_00001579-exon-sc0000011-1491911889:314828..315693Clytia hemisphaericaexon
TCONS_00001579-exon-sc0000011-1510915933:314828..315693TCONS_00001579-exon-sc0000011-1510915933:314828..315693Clytia hemisphaericaexon
TCONS_00001579-exon-sc0000011-1575043694:314828..315693TCONS_00001579-exon-sc0000011-1575043694:314828..315693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:307298..315693 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
68.0319	64.9355	42.9538	44.6917	38.9788	28.823	37.5478	39.6817	37.2965	34.8316	31.8257	28.3068	18.2887	20.5527	29.9475	31.7407	57.7679	48.9974	11.5755	11.2198	32.2224	30.4571	74.682	66.1706	32.9187	31.3987	20.0918	15.5679	38.4307	40.0627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00001579 vs. Swiss-Prot (Human)
Match: RT18B (28S ribosomal protein S18b, mitochondrial OS=Homo sapiens GN=MRPS18B PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.231e-25
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 3 
Query:  381 VEDTENVDSQDERLVWHGYKRNFKGQFPPEKPRKTCIRNNGNRVSGNPCPLCQIKLKSSYNVHFTDVQLLEQFICPHTAEILSPKVTGICKKQHLQVEAAIKKARNFGYLPFTLP 725
            +E  E  +    R VW  Y+RN KG  PP++ RKTCIR N  +V GNPCP+C+       +V F +V+LLEQF+C HT  I     TG+C KQH ++  AI+KAR+ G L + +P
Sbjct:   59 LESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRN--KVVGNPCPICR---DHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
The following BLAST results are available for this feature:
BLAST of TCONS_00001579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT18B2.231e-2545.2228S ribosomal protein S18b, mitochondrial OS=Homo ... [more]
back to top