TCONS_00001579-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001579-protein
Unique NameTCONS_00001579-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001579-protein ID=TCONS_00001579-protein|Name=TCONS_00001579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MLRNLIWKNQQLFLRPSQSQLLKPIFNLHTTCIKSGTHDYEAVDVLLNAK
RHKEATGNESILNQAASRSGAVVRWKKVEGEMLLDEDPVLVVGRPFQIKA
ATDVLLNGVVEDTENVDSQDERLVWHGYKRNFKGQFPPEKPRKTCIRNNG
NRVSGNPCPLCQIKLKSSYNVHFTDVQLLEQFICPHTAEILSPKVTGICK
KQHLQVEAAIKKARNFGYLPFTLPLHSKEQGKHIPAGIPTDKKIKVKMH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000825XLOC_000825Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001579TCONS_00001579Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18GENE3D4.10.640.10coord: 135..228
e-value: 3.1E-16
score: 58.9
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 170..217
e-value: 4.6E-14
score: 52.3
IPR001648Ribosomal protein S18PRODOMPD002239coord: 173..221
e-value: 4.0E-8
score: 138.0
IPR001648Ribosomal protein S18SUPERFAMILY46911Ribosomal protein S18coord: 147..224

Blast
[Close]
BLAST of TCONS_00001579-protein vs. Swiss-Prot (Human)
Match: RT18B (28S ribosomal protein S18b, mitochondrial OS=Homo sapiens GN=MRPS18B PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.232e-26
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0 
Query:  110 VEDTENVDSQDERLVWHGYKRNFKGQFPPEKPRKTCIRNNGNRVSGNPCPLCQIKLKSSYNVHFTDVQLLEQFICPHTAEILSPKVTGICKKQHLQVEAAIKKARNFGYLPFTLP 224
            +E  E  +    R VW  Y+RN KG  PP++ RKTCIR N  +V GNPCP+C+       +V F +V+LLEQF+C HT  I     TG+C KQH ++  AI+KAR+ G L + +P
Sbjct:   59 LESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRN--KVVGNPCPICR---DHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
The following BLAST results are available for this feature:
BLAST of TCONS_00001579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT18B2.232e-2645.2228S ribosomal protein S18b, mitochondrial OS=Homo ... [more]
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