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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001570 ID=TCONS_00001570|Name=TCONS_00001570|organism=Clytia hemisphaerica|type=transcript|length=3266bpRun BLAST on NCBI protein sequence of TCONS_00001570-protein >TCONS_00001570-protein ID=TCONS_00001570-protein|Name=TCONS_00001570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp MAQVSCSNGFSSTEETSKMAADQALLKNSNANIFGDIESMRCEKCKSKKKRun BLAST on NCBI transcript from alignment at sc0000011:141382..153715+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001570 ID=TCONS_00001570|Name=TCONS_00001570|organism=Clytia hemisphaerica|type=transcript|length=12334bp|location=Sequence derived from alignment at sc0000011:141382..153715+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:141382..153715+ >TCONS_00001570 ID=TCONS_00001570|Name=TCONS_00001570|organism=Clytia hemisphaerica|type=CDS|length=26136bp|location=Sequence derived from alignment at sc0000011:141382..153715+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001570 vs. Swiss-Prot (Human)
Match: ZFYV1 (Zinc finger FYVE domain-containing protein 1 OS=Homo sapiens GN=ZFYVE1 PE=1 SV=1) HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0 Identity = 351/670 (52.39%), Postives = 461/670 (68.81%), Query Frame = 1
Query: 625 DKPKSLLLIDSTERLQVTKEGDFKHLLGCDDDPRVKVVSIFGNTGDGKSHTLNHTFFDGAEVFDTSPSQKSCTVGVWVSYCPNQKAIIVDTEGLLGVSENANKRMRLLMKILAVSDVVIYRTRAERLHSDMFTFLGDASEAYIKYFTKDLQSVQQRGHMENVPLCSLGPSIVIFQETHYTTPLGFENDPSEHDNSPEEILRSNFFNIGRNPAAFSSINYVGTRTTTQSTDFSIXXXXXXXXXXXXTVRSARPVSVIFNALMFLNDKFGDDI-NDILPNS--FPDEYFTCVSKCLSCSARCGKNMNXXXXXXXXRSEQKCTYQAQFDNKVYTCKACHEKGVESLVIPKTAETQDSPLVGLAKYAWSGYVLECPKCGVIYRSRQFWYGNGE-VENFVRIEIKHVWPGTR-LPNTSQNSARRILDGMMNLADAITNVSAKPTKAVTSWVTDKVAPTYWTPNYLIIDCAKCGHDFEETEKKHHCRACGRGYCDSCTQHRIPVPDRGWGDTPVRVCDDCFTKSGQVDQSSVQKNSIDISELLEAIDDDPEIDTGEMVAIKTAKNIPTRHPPEVLTTRKVTEQVQSTXXXXXXXXXXXXXXXVDSARPDYWVPDSKILNCHSCEMEFSKKDSKHHCRKCGKGFCDPCSKSRVPVPSRGWDYPVRVCNGCSLKKGPL 2619
+K S LL+D E +QVT E DF L C D +KVVSIFGNTGDGKSHTLNHTFF G EVF TSP+Q+SCTVGVW +Y P K ++DTEGLLG + N ++R RLL+K+LA+SD+VIYRT A+RLH+D+F FLGDASEAY+K+FTK+L++ R + +VPL +LGP+++IF ET +T LG + PSE PE++++ F +GR P AFSSI+Y GTRT TDFS L +++ L+N T RS R VIF AL L+D+F +I +D + +S FPDEYFTC S CLSC C K+MNH KE H ++ +C Y Q+DN+VYTCKAC+E+G E V+PKT+ + DSP +GLAKYAWSGYV+ECP CGV+YRSRQ+W+GN + V+ VR EI HVWPGT + N+A+R+LDGM +A +++ +S PTKAVTSW+TD++AP YW PN I+ C KC F++ + KHHCRACG G+CDSC+ PVP+RGWG PVRVCD+C+ + ++ ++ +DD + G ++A RKV E VQ+TL + ++++ PL + D+ARP YWVPD +IL+CH+C EFS K SKHHCR CG+GFCD CS R VPSRGWD+PVRVC C+ K G L
Sbjct: 146 EKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGL-DVPLSTLGPAVIIFHETVHTQLLG-SDHPSE---VPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY-----------EARNVQLAVTEAQVDD----EGGTLIA------------------RKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL 777 The following BLAST results are available for this feature:
BLAST of TCONS_00001570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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