TCONS_00001560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001560
Unique NameTCONS_00001560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001560 ID=TCONS_00001560|Name=TCONS_00001560|organism=Clytia hemisphaerica|type=transcript|length=2054bp
ttgtCTGTATTAAATAGatttcatgatgaaatgaattatttgcaaaattt
tcaagATAAATAATATTATTGtaatgatttatttttaatgtgaaCTCTTC
AgacataaaaaacaaagaaaaaaagaaaagaagaagagaaaTGAATTTCA
actttattcattttttattggcaatagtTTTGCTTCAATGTGttaaGGCA
GAAACGAATGGTACTTCATTTGTAATTGAAAATGTGAGTTCATCCACACA
GACGATTTTCTCTTCAACACCAATTATCCAACAAGATGAttctactacta
ctactactacaaCTCCAATTGTTGAAAGTTCTTCAACGACAACACAAGTG
ATACTACAACCATCATCTACAACTACGATTGTGCATCAAACAACAAGCAC
ACAATTACTAAATTCATCAACTACAACAATAATGAAAGAAAATACCACAA
CAAGCACAGAGACAACACCTCAGCACACATCATCTTCCAGTCTAAATTTG
GATATTCCTAAAACATCCTCTGTAATTGAATCATCAATAGCAACAACTAC
TACTAATACTCAAACGATGACTACCCAAACCTCTATAGAACAATCACCCT
CAGTAAGCAAGAGTACATCCAGCATCTTGCTACCAGACAGTAGTCTGTCA
AATGAGGCATCTTCATCATCAATAAAAAGCTCATCTGTGCTAGAGATGGC
CTCTTCACAATCTTTAAATATATCATCAAAAACTTCTACCAAATCTGCAC
ACCCTTCGCAATCAAGCTTTATGGATGAGTCGAGCATGTCATTAAGGATC
AGCAGCTCTATCAGTCTACCTGTTTCTACGACAGAAGCAGTTGAATTGGA
CAGCTCATCAACTGAATTAATGGAAGAATCTTTATCTACAATGTTAGTGC
catcaatttcaacaatctcCAGTGATTTCCAGGAAGCATCTATCACTCAA
ATTATATCGTCTATGAGCATGCCAGAATTATTAGATTCTGTTTTGTCCTC
ATTTCCATCATCTGTTGACATGCAATTATCTTCAGCTCCAGTGACATCCA
GCTCATCGATCATGATGGAACCAGAAGTAACACAAACTTCATCAGTAACA
TCAATAATATTCATTCATTCTCAGTCAATGTCTTCAGTATCTGATGTCAG
TTCCTCAAAGGTTATGGAATCTATACCACAGTCACAGTCATCAGCTGCTT
CATCTATGCTAGTCTCATCATCGTCAATGGCCATTGTTATTCCAGATATT
ACCACATCTTCGTCAAAAGCTATCATATTGCCAACAAGTTCTTCGAGAAT
AGCAACATCATCTTCAAGTAATGAAATAGCTCCAAAATTATCTTCCGGCA
AACTAAAAACGACTTCATCCACAAAAGTTGCTACCACTTCTTCAAGTGAA
ATTAttcttgAAAGCTCTTCATCAAAGCTAATCACCTCATCTTCAAGTAT
AATAGCAGTTCAGCCAACAAAAGCGCCAACGAGTGGATCAGGCTCCAGCA
AAAAGACCATCGGTATTGCAATAGGAATTGCTATTGGACTGATTGTCATT
ATTTTAATCATCTGTTTGGTCAGACGTAAAAGAACTTCAGCAAGTAACAA
ATATCGACTATATAACAACGATATACAAATACCAGGCTTCACAGACTTAG
GTGGCACAGTTCGACTGAGCTCAACAAAtgaATATGAGATGATAGATGCT
TCAGAGTCAAGGGCAAGTGACACACCTTATGAGACAGATACTGAAGATAG
AGGGAATGATATTGAACAAAATGGGTATGCCAAACTAATTCCTTACACTT
TTTGAAGTCTTATGAATGCAGCAAATGAAATGGAGTTTCAGGGGGAAATG
AGAGGTGCATGTTCATTCTAAGCCATGCAAAAGAGAATGATAATTGCTTA
GAGATGCATGATAAAGAAAAGTTTGTGATgaaaactattttcaaacattt
tcgaTATTGGAACACCTTTATTTGAGTCAAGGTGAGAAACTAGAGAAGTT
TTGCTATGCTTACTTCCACTTAGTCGACcctttcttcaaaattttctaaa
ggAT
Run BLAST on NCBI

transcript from alignment at sc0000011:40587..44605+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001560 ID=TCONS_00001560|Name=TCONS_00001560|organism=Clytia hemisphaerica|type=transcript|length=4019bp|location=Sequence derived from alignment at sc0000011:40587..44605+ (Clytia hemisphaerica)
ttgtCTGTATTAAATAGatttcatgatgaaatgaattatttgcaaaattt
tcaagATAAATAATATTATTGtaatgatttatttttaatgtgaaCTCTTC
AgacataaaaaacaaagaaaaaaagaaaagaagaagagaaaTGAATTTCA
actttattcattttttattggcaatagtTTTGCTTCAATGTGGTAAGTTT
GATGTCATGCTTCCTTTTTTTTGATCAATCTCTAAATAGAGTACTTTCTA
CCTACCATTGTAcaatttcaacacttttttaaaaagaagctTTTTCATAC
ATTGAGAGTATTTTTATATGTTGAATTAGTTctgatatattttttgattt
ttagttaaGGCAGAAACGAATGGTACTTCATTTGTAATTGAAAATGTGAG
TTCATCCACACAGACGATTTTCTCTTCAACACCAATTATCCAACAAGATG
AttctactactactactactacaaCTCCAATTGTTGAAAGTTCTTCAACG
ACAACACAAGTGATACTACAACCATCATCTACAACTACGATTGTGCATCA
AACAACAAGCACACAATTACTAAATTCATCAACTACAACAATAATGAAAG
AAAATACCACAACAAGCACAGAGACAACACCTCAGCACACATCATCTTCC
AGTCTAAATTTGGATATTCCTAAAACATCCTCTGTAATTGAATCATCAAT
AGCAACAACTACTACTAATACTCAAACGATGACTACCCAAACCTCTATAG
AACAATCACCCTCAGTAAGCAAGAGTACATCCAGCATCTTGCTACCAGAC
AGTAGTCTGTCAAATGAGGCATCTTCATCATCAATAAAAAGCTCATCTGT
GCTAGAGATGGCCTCTTCACAATCTTTAAATATATCATCAAAAACTTCTA
CCAAATCTGCACACCCTTCGCAATCAAGCTTTATGGATGAGTCGAGCATG
TCATTAAGGATCAGCAGCTCTATCAGTCTACCTGTTTCTACGACAGAAGC
AGTTGAATTGGACAGCTCATCAACTGAATTAATGGAAGAATCTTTATCTA
CAATGTTAGTGCcatcaatttcaacaatctcCAGTGATTTCCAGGAAGCA
TCTATCACTCAAATTATATCGTCTATGAGCATGCCAGAATTATTAGATTC
TGTTTTGTCCTCATTTCCATCATCTGTTGACATGCAATTATCTTCAGCTC
CAGTGACATCCAGCTCATCGATCATGATGGAACCAGAAGTAACACAAACT
TCATCAGTAACATCAATAATATTCATTCATTCTCAGTCAATGTCTTCAGT
ATCTGATGTCAGTTCCTCAAAGGTTATGGAATCTATACCACAGTCACAGT
CATCAGCTGCTTCATCTATGCTAGTCTCATCATCGTCAATGGCCATTGTT
ATTCCAGATATTACCACATCTTCGTCAAAAGCTATCAGTAAGtggatttt
gcttaaatacCATCACTTTTTTATACGttagaattttgaataaaaatgta
cATAATCCAGTGTGATTCTAATATGGGTTTACACAAGAACAAAAAGTTTA
ttgagaaaatgaaaatctatAATGATGTATAATTcaatttcactttcaat
ttaAGTATTGCCAACAAGTTCTTCGAGAATAGCAACATCATCTTCAAGTA
ATGAAATAGGTANATTGCCAACAAGTTCTTCAAGAATAGCAACATCATCT
TCAAGTAATGAAATAGGTACATATAATTTATGACACTTTATGTATCATTT
TTTGCAGAACTCAATCAtcttgaaagattttttctagAACTCTCTTCTTG
TTAAAAGTAATATTTTGTTAtctgtttcattttcatttatttttccaGCT
CCAAAATTATCTTCCGGCAAACTAAAAACGACTTCATCCACAAAAGTTGC
TACCACTTCTTCAAGTGAAATTAGTAAGAAGCACTCATTGCATTCATCAT
TCAAAGGTCACAATGTATTTGTCAGGAAATTTAAATCTCTTCAAAATGAT
AACGTGAAAAGATGGAATGGGTTAAGAAAAGCTTTTTAATGAGATGACTT
GTTGCTTtcatcatagtcattataaaaaacccagGTCTTGTAATGTATTG
TTTTATCTTTATTGTCAACTTATAATGACTAAGCTTTGATGGCTGAAAAA
AATCTTGATAAGGGTACATTCCCTATTCATATGTATATAACATTGCCAAC
GCTTCACATGAAGAACTTGTCCTAATATTGGAAAAGAGACTGAAacctaa
tatttttttttagttcttgAAAGCTCTTCATCAAAGCTAATCACCTCATC
TTCAAGTATAATAGCAGTTCAGCCAACAAAAGCGCCAACGAGTGGATCAG
GCTCCAGCAAAAAGACCATCGGTATTGCAATAGGAATTGCTATTGGACTG
ATTGTCATTATTTTAATCATCTGTTTGGTCAGACGTAAAAGAACTTCAGC
AAGGTTAGAATTTTATGTCTTGATTATGCAACCTCGTGAAACGAGAAAAA
CTATTTAGGTTCAAAACAGACCTTAATAATCCATGATACCATGCTTTGAA
GCTTTTTTTTATTCTTGGTGACACTTAAAACATACAAAGTCTTCACAATA
TTTCATAGACCATAGTATTGTATAGATCCTCCTCTAGCCAAACCTCTCTG
TACAGCTTGGAATTCTTCATTCCATGTCTCAAAAGTTTATTTTACtttgg
tatttttttgtttccataATTATTTTGTTCGTTTCTTTTCTGTTATTTAA
ATCTCATTGACCTTGCTtgttaagttttcaaagctTAGTTGAATTTTTTA
AAGTGTTATTCAGCTTATTCATAACATGTAAAATTGCAGAAATAACATGA
AAAACTGTTGCTTTGTTTTTAGTAACAAATATCGACTATATAACAACGAT
ATACAAATACCAGGCTTCACAGACTTAGGTGGCACAGTTCGACTGAGCTC
AACAAAGTGAGTCCAATATGATTTTATTCCCAAGATACCTATttgatgta
cacgtttttttataagaacaaactatataagaacattaaggctttaatgg
ccaaaatgttaaaagaactagttaagaacattttaaggctttgtggactc
taaaacacccgattttttaagaaaatggacaataatactaaaaaaatggc
gaaaataagaacatttttaggctcaaaactcaaaaagttaggaaCTTTAA
CGTtaacgaaggcttcaaaaattttggatggttcttataaaaaatatcaa
gtgTTGGTGTAATTGTTATTGTTATTCAAATTCATGGAAGGTAATAAACA
GATCTTGTAAAGAGAGCTTTCCATATTaaagaattttctcaaaattaatc
aattttttaatttttttagtgaATATGAGATGATAGATGCTTCAGAGTCA
AGGTATGAGCTTTCTACTGTGTTACGATTTTTAACGTGCACATTTCCAAT
TTCAGTGACATTTTTATAATCTCTATTCTTCGACAAACAGCTTCTGACTA
TCCATAGAAATCAAGAACTATTTTAATACAAAAGCCTTTCCTTCGAAAAT
CGAATGGTTTTTAGTGTTGAtattctgattttaaaataatcGTGATAATC
AGATTATCTTTAGAGAAAAGACTGATTAGTTGTGGAGTAAATAATATAAC
TTGTTTCAATTCTATCTTTTTTGCAGGGCAAGTGACACACCTTATGAGAC
AGATACTGAAGATAGAGGGAATGATATTGAACAAAATGGGTATGCCAAAC
TAATTCCTTACACTTTTTGAAGTCTTATGAATGCAGCAAATGAAATGGAG
TTTCAGGGGGAAATGAGAGGTGCATGTTCATTCTAAGCCATGCAAAAGAG
AATGATAATTGCTTAGAGATGCATGATAAAGAAAAGTTTGTGATgaaaac
tattttcaaacattttcgaTATTGGAACACCTTTATTTGAGTCAAGGTGA
GAAACTAGAGAAGTTTTGCTATGCTTACTTCCACTTAGTCGACcctttct
tcaaaattttctaaaggAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000817XLOC_000817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001560-exon-sc0000011-1491911889:40587..40778TCONS_00001560-exon-sc0000011-1491911889:40587..40778Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:40587..40778TCONS_00001560-exon-sc0000011-1510915933:40587..40778Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:40587..40778TCONS_00001560-exon-sc0000011-1575043694:40587..40778Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1491911889:40941..42023TCONS_00001560-exon-sc0000011-1491911889:40941..42023Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:40941..42023TCONS_00001560-exon-sc0000011-1510915933:40941..42023Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:40941..42023TCONS_00001560-exon-sc0000011-1575043694:40941..42023Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1491911889:42192..42245TCONS_00001560-exon-sc0000011-1491911889:42192..42245Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:42192..42245TCONS_00001560-exon-sc0000011-1510915933:42192..42245Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:42192..42245TCONS_00001560-exon-sc0000011-1575043694:42192..42245Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1491911889:42435..42509TCONS_00001560-exon-sc0000011-1491911889:42435..42509Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:42435..42509TCONS_00001560-exon-sc0000011-1510915933:42435..42509Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:42435..42509TCONS_00001560-exon-sc0000011-1575043694:42435..42509Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1491911889:42850..43039TCONS_00001560-exon-sc0000011-1491911889:42850..43039Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:42850..43039TCONS_00001560-exon-sc0000011-1510915933:42850..43039Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:42850..43039TCONS_00001560-exon-sc0000011-1575043694:42850..43039Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1491911889:43459..43542TCONS_00001560-exon-sc0000011-1491911889:43459..43542Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:43459..43542TCONS_00001560-exon-sc0000011-1510915933:43459..43542Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:43459..43542TCONS_00001560-exon-sc0000011-1575043694:43459..43542Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1491911889:43956..43988TCONS_00001560-exon-sc0000011-1491911889:43956..43988Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:43956..43988TCONS_00001560-exon-sc0000011-1510915933:43956..43988Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:43956..43988TCONS_00001560-exon-sc0000011-1575043694:43956..43988Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1491911889:44263..44605TCONS_00001560-exon-sc0000011-1491911889:44263..44605Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1510915933:44263..44605TCONS_00001560-exon-sc0000011-1510915933:44263..44605Clytia hemisphaericaexon
TCONS_00001560-exon-sc0000011-1575043694:44263..44605TCONS_00001560-exon-sc0000011-1575043694:44263..44605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:40587..44605 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.306004	0.333126	0	0.098812	2.55782	1.73411	2.1956	2.40409	0.692095	1.89063	1.41384	0.704225	1.2647	1.29126	0.593786	1.0119	0.826377	1.25395	0.884548	2.01008	0.816303	0.852785	0.889841	0.983998	1.80064	3.21651	3.02272	4.35916	4.10222	3.7329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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