TCONS_00001557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001557
Unique NameTCONS_00001557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001557 ID=TCONS_00001557|Name=TCONS_00001557|organism=Clytia hemisphaerica|type=transcript|length=1957bp
CCGACTCAAACCACCGCCCGTTCACTGAGCGAAGGAATACATTTTTTGGT
ATTGTGGATGCAGTGCCCAAGAATTTCAGTAAACTAAATAATAAAATGCA
GACCATCAAATGCGTGGTCGTTGGTGATGGTGCCGTAGGAAAAACCTGTT
TACTGATTTCTTATACAACAAATAAATTCCCCAGTGAATATGTACCGACA
GTATTTGACAACTATGCTGTAACGGTCATGATAGGAGGAGAACCATATAC
GTTAGGTCTCTTCGATACAGCTGGTCAAGAAGATTACGATCGTCTCAGGC
CGTTATCATACCCACAAACAGATGTTTTCTTAGTCTGCTTCTCTGTTGTC
GCCCCTGCATCATTCGAAAACGTAAAAGAAAAGtgGGTTCCAGAAATTAC
ACATCATTGTCCTAAAACACCATTTTTACTAGTCGGTACACAAGTCGATT
TACGAGATGATGCCGCCATCGTTGAAAAACTCGCCAAAACGAAACAAAAG
CCAATCTCTTTCGAACAAGGAGAAAAATTAGCACGAGAATTGAAAGCAGT
AAAATATGTCGAATGCTCCGCTTTAACGCAAAAAGGATTAAAGAACGTTT
TTGACGAAGCCATTTTGGCTGCATTGGAGCCCCCAGAGcaaccaaagaaa
aagaaatgtgtTTTACTCTAACTttggttaaaaaattaattttttgttga
aacGACCTTAATATAAAAATTCCACTCGCTTCCGTCGATCAATAATGCAC
ACTGCGCTTATCGATAGAGAGAATCTGCCAGTGGAATGAATTGTACAGCT
TTGCTTATATGCCAAGAGAGGTGAATTCATCATAACATAAAAGTGTGGAA
TACCTTTCAAAGGTTTTGCGAGGGAAACTGTTCATTGTATCGTTAAAAAC
CAACATCAAAATAAACCTCTATTTtatagtttaaaaaaaagtttagaaac
ataaAATTAAATGAATTAAAATATTGTTACCCAGGTTTTTTCTATAAATT
AAGGGCTGGGTTTATGTACTATATCTGGATATGCAACTTTTTTTGTATGT
ATTCTTATGTACCTCTTTCGAAAAAATAGTAATTTTTAAGACTTCTCATA
ATGAATGCCCTGATTGAGCTCAAttcaacttttaatttttttgtttattt
attgtgCTGATTTTTTTCCTTCGTTGCTTTTCAGGGGATATTCATTTTTG
TTTCAATCACTCAAAcgattttttaaatatggcCAAAGTCTTCAGTTTTT
ATTCTTTGCTCAATCAGGGTGTACACCGAGAAACTATGTCACATTTTTTA
TAGTTGATTTCTCATGAATGAATTATGGGACCAACCCCCTtctatatttt
gttttaaaagaaaactaaaTTGGCCACACGATTTGTACTTATCTATCTGA
TTTTATACTTGTGAAAATATCAACTGTCTAGAACTTTAAACACATCTTGC
TCAGATTTGTTCTTCTTTTAAGAAATATCAGGGCAGAGTTCCAAATTATA
TACTTGTCAACTTATCAAAACTATTCAAATCGTTTATCTTGTATAATGTT
CGTCAGCAAATAGATTGTTAGTTTTGACTCTTTTTGACTATTTTGATTTT
GTAGGATTATAAACTATATTTTTTTCGTCCCCTATGTGTTgtctgtattt
ttgaaaaacaatgttCAATATacagacaatttaaaaaatttgcctGTAAT
TTACTTCAATACTTCATGTCCTCCTTTATCTCCATCCCCTTCTTGTCCGA
AGGAACTTTACAATTCTTAATAACCGAGTTCCAAAAGCGAAGTGGAtcat
gtggtgtgtttggggcattaaggctcttacgaacCTGTCTCCATAGCGGC
TTttttattagagggatttttagagtgtctcttattttgctagcaacttg
cgaattgaggtggagtctagatcgcttcgcaacccttatacaatacggct
agtagTG
Run BLAST on NCBI

protein sequence of TCONS_00001557-protein

>TCONS_00001557-protein ID=TCONS_00001557-protein|Name=TCONS_00001557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
DSNHRPFTERRNTFFGIVDAVPKNFSKLNNKMQTIKCVVVGDGAVGKTCL
LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP
LSYPQTDVFLVCFSVVAPASFENVKEKWVPEITHHCPKTPFLLVGTQVDL
RDDAAIVEKLAKTKQKPISFEQGEKLARELKAVKYVECSALTQKGLKNVF
DEAILAALEPPEQPKKKKCVLL
Run BLAST on NCBI

transcript from alignment at sc0000011:4393..18431+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001557 ID=TCONS_00001557|Name=TCONS_00001557|organism=Clytia hemisphaerica|type=transcript|length=14039bp|location=Sequence derived from alignment at sc0000011:4393..18431+ (Clytia hemisphaerica)
CCGACTCAAACCACCGCCCGTTCACTGAGCGAAGGAATACATTTTTTGGT
ATTGTGGATGCAGTGCCCAAGGTAGTTTCTTATTGTGTGATAGATTATAC
AATAGTGTGCTTCATATCTGTAAGAGAGACTTTATTTGTTTTCAGTTTGA
CAGTAAAGATGGTTCTTCTTGTTACACAAATTACTCAGAGTGATTTTAAT
AGTCTTGACAAACAGAGAATAATTTTCAAGTTTGTCAAGTTCCTTATTGA
TCTATTTGGTATATAATCTAACCACCTTCGACTTCGCAGGTACTAGAGTC
AAGGCTATGAATCAGGATTCTCAATTTATCATTTGATAGGTCCATTTTAG
GGTTTGTTTCGGTTTGTGACCATCAGacaacgaccctgcctatgccccgg
acagtccggggcaaatgtctggggtctgaaaaaaataactttttccccgg
acctacgtccggggctccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCGGACGTATATCGCCGAGCACACTTTAAA
CCCCCGGACATTTTATCCAGGTCTAAAACTCACCCCCTCACGCCCAAATT
CCGAgattatgtatgtgtgtttttaggaccctgtcgacgcaccggactgt
ccggtgtaccgtagagtcgtttaatctcgacatacgtcttgcaatctcga
catagctgtaggctggtcttcgaaataaaaaatcaaacataaacNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTACTCAGAGTGATTTTAAT
AGTCTTGACAAACAGAGAATAATTTTCAAGTTTGTCAAGTTCCTTATTGA
TCTATTTGGTATATAATTACAGGATAACTCACAATTTTGGAAGAATAGGA
GCTCtatcagtatagacttaaactcgtatatcacAAGATTACGGTAGGGC
GGTCGGAAGTCGCGTATTTTCCCGTGTGACAAAAGACGACGCGGAAACAA
AAGaaggataaaaataaaattcagagTTAAATATCTAAATGATAAACATG
GTTTCATCCATGATTTCAGTCCCCCCTTAAAACAGAAATTTACCCCTTAT
CCATTTTCCCCCCCTTATCTTCCAAAATTTATTAAAGCTGCCCCTTAAAA
GGTACTCCCCCCTTAATTTTCACTCCAATATTTTAATGTCCCCCCTTAAA
TTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNttattagtttttttaaaaaagtttgttatcatacta
aaaaaaacagattacataaaagaataaaaaagaagtCATTTGTCATCTAA
TTTAAAAAACACTCAAATTGCAAACCGTGTGAAGTAGACAAGACGAACAA
GACAAACTAGAGTAGCAAtgcaaaaaacaacaatttttcatcttttttac
cAACAGCAAACATAACTTGTAAACCTTGATAAGAATCTTATGAGCAGCTA
AAAAAgtttattagattttgcaatttttctacaccatatttgtaaatatt
tctCCATAACATAAATCTGACAAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNcaaaggtttgtttttaaagagatcattttttca
atttcaggaaacattcgatttttagaaaacattcgattttagaaaacatt
cgattttagaaaacatttgattttagaaaacattcgattttacaAGATAT
TCGATTAgattttagaaacatttgaatttgaaaaaaaatccaattttaat
GCATTTGGCTGAAATACAGATTCTTGAGAAAAGAATTGAGTCTGAAATAA
GAACAGGAAATTCTTCTCAACTGTCAAAAATTACTCCCCCCTCAGATAat
atttatttgtttctttgGTGCCCTTAAGCCCTAGCCCCCCCTtacttcag
attttccaaaaatttgaccccttaaagcttttttcaaaaatttaagtccc
cccttattttaagggggggcTGGCTGAAACCATGATAAAGAAAGATATCT
GCATGATTTTTTGttccaaaatgaaaagaatttatTCACCTTTACAGTGC
AAAAAACCAGTCTTTAACGTTCTTCCTTCATTTGTACTGTAATCTTCGAT
TTTCAGAGCTTGGGTTGCCCTATTTGTTGTGAACAAGATTACGGCACCGC
AAATTTGGAAAAACCATGGATACTTTTGTTAAGATCACGAAGGAGCAGAT
CGGTCCCGTAACAAATGGTTTTTTGTGTTTGAAAGATGGTAGATCAAGCT
TTCTTTTGAAACCGTTCGTTNTTTTTGTGTTTGAAAGATGGTAGATTAAG
CTTTCTTTTGAAACCGTTCGTTCTGTAGGGTCGTGCATTGTCTTCAAGCA
AATGTAAATCAAAGaattaaatccaaaattttttgaagaatctGTCAAAT
TTTTATGTTGCGAAAGGTAACAGCAAAGAGCTTAGACCTTCCTCTTTCAT
GCTGTGCAATTATCTTTTGTGTATCTATATCTGCTCCATTGTAAGGGAAG
TTTCTCTCGCCCCAAACTTCCTGCgcagatttttttgtaaaacactttcg
atttcagtgcCGTGGACATGTTACAAGATGGTAGGaggtttttgtatttt
ttgaacaggaatcttaaaaaaaatggaacttcaaaatggaatatctgaAA
AACTACTAAAGGTTGAAAGataagtgacccctcattttttttctgaggat
aagggcttttcattaaacttggtttgacattatgaaaatgattttgaaat
ttcgactgacCCCCCTaattacgggatttcgagtacgggccaattttact
tttgttttgagtggtttcatcaggccatttttcatgcccttttattgccg
gttatcggacgctgcccctcttgaaattactaaaatattggtaaaaacag
ccttttttgtggaaaaacactgaaaaaagtgccctttttgaccaccaacg
gacgctgccttgcctttctaaaataggGCCTGTTcaatcattttcgattt
caagcaaacatcttagcaacggggtgctcgcccatagttacaggggtttg
tgcaaaaaactaaaaataaaaaattttccaaatcccttatttcgattaat
gcaatgaaaaatgaaacttttctatgtttcacttttttgcacctaatctt
caaaatgaaaatatttaagatttaagttcttcttttattcaatgattttt
tacggcactttgttgacaatctaactctcccatcaaattcccgctttctt
aaccttttccggacgcacgggccactgggtggcccattaatcgtgttcct
atatgacgcacgggccatcgggtggcccatagctttgtaaaagattttaa
cagttttcgcgccaaaatacaataacatggttttgaataatgattttgag
ataaatttcccgtaacctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGT
TTACAacaagaattataaattttcaatgtttgttgcaaatttactcaggc
taaatctgtaagggaaaaattgctcaaaaatttggacaaaaaatcaccat
actcagattcttggaaagcttatgacatgaaattttttttacctggtCAC
TAATTCAACTTTCTAAATCATATTCcaagttcaaggcgtaaagcaatTGC
CTTTATTCTACTTCTTTATtcaagtcaaaatttttgcctttgcgaaaaaa
aaatctgcagatttttcggtcacgtgaccaggtgtcagccatatttaaaa
tttttttttggtatttcaaaacccctattacatgtggaaaaaatgaggta
ttacttatcgtgatatctttaatcaatcactttctattgcaattttagtg
aaaccagtcaaaaatagaatttttgtttGTGTCATATAGCCatgaaatca
tgcgtccggaaagggttaagtaAATTGAAGATGGGAAAAACcctaagcca
cggatcacggattgaaacaaatatatgaagggtgggattttacagccgcc
cgtcatgcaaggcactgaaaggccacgggtgccaaaaagaagggccattt
gaaatgtggcaacctcattggtagaaatttgataaacagctgcgaaggag
cgctggaaagcaatcagtagaagagacctctttcgtttttgttgcagatt
ttttataaaaacttctctcagggattacttgtcaatgtacatgtacacat
gtgttgtgtcaacttgtcagcattgtattgttgtaaaggaaaagataaaa
gaggtaagactagcctagtttctaatcctgatataggagtttaagtttag
actgtctATTATTACAGTAGTCAGAAGTTTGATCAGTTTAATTATTCCAG
CAATCTTCACCTCTTCCTTCAAAAATTGTATCACCGCATTTGACATTCTT
TGAAAGTGTAAGGTACAAACCTCCAGGATGGGAATtaactttctttctat
tttttctatctTTACTCACTTCCCTGGTATGTTTAAACTAACTGAGACTT
ATTTTTGAGTTTATTGTAATTGTTCCATCAAGCTGTTAATCATCTTTCTA
CAAATTAAACTATTGCACTGGATAAGATTCTAACCATCACCAAAAACAAC
CCTAACTGGTAATGACCCAATATCCCTGAAGGGTGGAATGGGTATTGgtt
caaatttgctcaaattggCATGCTAACATTCTCCTGAATTAGCATGCAAA
AACGCTGCAAAATCTTCCTGTGCAATGTCCCAAAAAGTATTAGCTTGAGT
ATTAcaggcatcgaaataagggatagaaagtgcatcgcaatttttggata
agcatgattttgcatcctaaaatggatcaattttcaattcttaGCTTGTA
ATTAATCTAAAAACGCATTGCGAAATGCGATacgctaattcgatccctgT
ATTAGGGTTTTATTTTCGTAATACAAAGCAGATGATTTCCAGAATGAAAA
AGTGAAGTAATTAAAAATGCAGAACAGTCCATAGCTCCTCCCGTTCTCCC
AAACGACTTGCCATAGAAAAAGTTGATGGAAGTTTTCTCTATGAACCCCC
AACTCCTTCGATGTGGCAATAAAGTTTTTAAATGTTGAAATCTCAAGATA
TTCAACCCTTCATCGCTGTTTCATTATGTagttgttggacctaccccggt
ggaggtcctataaattaacctttgtccgttcgttcttCTGTTCgccgtct
gttcgttcgtctgttcgttattagctttcctcatgattggctcgttagtt
ttttctgattttttgcacaaagatgcataactataaaccctcgaatgtga
cggagcccgattttcaaaaaaaaaaaattttggacaaatttgggccaaaa
aacaactaaaaaacaggttttttggactttgtgaaaaattaggtcgttaa
ttgtttctgattttttgcatgaaagtagggtaccatcgtaggtaaaagat
ggcttaagcaaatttttgcaaaagaatattgttggctcaaaaaacgcatg
tttatctataagaatcactattaataagcatacatcaatgttcttagtca
aattactcaatttttttattagatagatgttttttttgcccatgagggct
tacttttaaagaatatatgtgtttagacatgaaattttggttgtttggtt
tgtttttatagaaaaactggccaaattcgatatttttttataagcacact
atcaattacttaggtattagcgtttctcgagattggctctttcattcttt
atgattttttgcacaaggatgcataactataaaccctcgaatgtgacgga
gctagatttttggggaaaaaattttggggtaaatttcagctaaaaaacgg
ataaaaaaagggttttttggacttgttatttttctgactttttgcatgaa
agtaggtaaaagatggcttcagcagattttcgtaaaaaaagaatttttca
gctcaaaaaacgcatatttatctataagaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaatt
cttcaagagtatgaaattttggtttctaaacgtgttttttataagaaaca
aacgactaattttaatagatcatcactatttgtgttctgaatgattgttt
aatggtcacgcttatgtagatatcaattatatatgtgttaaatgcataac
cagttgggtccataaaagtatcacttgttatcttTACTTTTACTATGGTT
TGCATGTCTTTTAAGTTTATTATTCGAAAATAATGattaagaaataaaaa
cttcCACTCCCTCAAAGTTATCCtgttttcaaatcaaagatTAGTACTTT
TAAAGAACAAGCATCCAACCTCCACCAGCTAAAAATGATATTAAAATACA
GAACCTAAAATGACCCGTAATTGtagtctttttcttttggtgTGGTCTGA
AATTGGCTAAATCATTGATAGTCTTTTACTTATCACTTGTGAgctggaaa
aaaataaatttcactAATGAAAAGCTAGAATCCTTAGCTTTGCATTGATA
GTTTtgatgaaacttttgaaaatattgagaaaaaaaactaaatttctgAT
TTAAAGACAGCTCATAGATTTTAGTAATGGCAACCATGTGACAAACTGAA
GTACTATCTTTCCCatgttaagaaaaaaattgaaaggttaAATCTCATTC
AGCCCATTAGGGACCTGAAAGATAGCTAAAAGAATGGTTGAGAATGATCC
TAATGtgctttttttggtaaaagctttGGAATTTATTTTAAGATTTCTAG
AAAGCCTTTGGTAGGTCATTGTAAATAAACTTTTTATTCGAAAGTGATTG
CTTATGAAATAAAAAGCAGTCAATTCTTTCAGGGCTAAAATGGTCtgtca
aaatatatttcttatTTCCAATTTTCAATTAAGGCGaaaccaatttgatt
agttgtttaaCAGGCCCGGCCAccttgaaattccaaaaatccaaaaaaaa
ataaaattgattttggtagtacatttttatttttatgaccTTATTGAcgg
ccaaaatttcaaatttttggtagttttgagaatttcatgttcaatttttc
atttcatccatGGATTTGagctttttgtctttttattttctatttcccAT
TTTGGCCAAgatatactttaatcgtagaaattttagctaGGCTAAtttta
gcgagtcaggaaaatcttgattttttttggatttattttagcaaatcacg
atctcaaaaagttttgcgcggataaattttagcgaatattcgtattacat
tattgactgagttccttttctagcatttctcagatcacttttatcaaccc
gctttctttgtaacttttaagggtgtttctaaaattacttttgtcaactt
gctttctttgtaaccttctttgttttgaaaatcacttttattggcttgct
ttcttcataactttcaagagtgtttctaagatcacttttatcaattcgct
tacTTCACAACTTCCAAGAgcgtttctaagatcacttttatcggcttgct
tacttcataactttcaagagtgtttctaagatcactttttgctccggcct
aggagccttaaattctctctcgtccgacgacgacgacgctcaagacattt
tttgtttgtttatctaatccgatgatctattccNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNATCAATTcgcttacttcataactttc
aagagtgtttctaagttaacttttatcaactcgctttctttgtaactttc
aagagtgtttctaagttaacttttatcaactcgctttcttcttaactttc
aagggtgtgaCAGGATTTCACTTCTGTCTGACATGATGTtcgattgacta
aaaatatttatttgcagccctgtatACAAAGAAAAATCGTGATTCAAACG
AATCAAAGATTTAAGAAGAAAAGTGTGTAGTAATGTGTACAAAAGTAAGC
AAAAGTCTCCAACTTGACAAAGATAATTGCTAATCGAACAACGATTTTTC
TCCTGACTGACAACGAAAGAAATTTTCACCCGGCCAATGGACCAGGTGCT
TTTAACCAGGTCGACTAGCTTTGTCAGGCAACCCAGCATCCTAATACAAA
CTTCTAGCAACTTGTTGTGTATTTAGAAATGTTTGGATTTAGTTTAGTTG
AATTTAGTGACAGTTATCTTTTAATAAAGTTACAAGctatttttttgaga
aaagaaaTTAAGTTAAGAGAAGTAAAATTCAACAATTACTTTCAACAACT
GTCTAAATGTCATAATCTCTTTTGGCTAAGGTTAGGATGGGGAAATAATG
GGTATTTGCTTTTTTGATGATAAACCTCAATAGTTAAAGATATTATATAG
ATATTATCATCATAATCCAAAGCAGGAACTTGTAATTGTAGGATTTCAGT
TTTGTCTGGTGTTTCTGACAGGAAAATTATGTAATAAAATTCAGGTTATC
TTGACTTTAATATTTGAGGAATTTGACTCCTGGAATTTGTCTAgtgaaac
tgaaaaatttaataaaacaaTATTTTCCCTTTAGAATTTCAGTAAACTAA
ATAATAAAATGCAGACCATCAAATGCGTGGTCGTTGGTGATGGTGCCGTA
GGAAAAACCTGTTTACTGATTTCTTATACAACAAATAAATTCCCCAGTGA
ATATGTACCGACAGTAAGTAAATATTTATTCTTTTCTATACTGGACAATA
GAGTATACCTTTGGAAATGCAGCTTTTATGCATACAAGgctttcaattaa
aaatgattttgtttttattttttctcaagGTATTTGACAACTATGCTGTA
ACGGTCATGATAGGAGGAGAACCATATACGTTAGGTCTCTTCGATACAGC
TGGTATGTATATTTGAATCATGTTTTTATTAGTatatcaaaaaagatttt
ttgtccaCCTTTTCCATTTTCCAGATTGATTGAGAACTTGGACTAAAAAG
CTTTTGACATCTTTCTTTGTGTTAAAGCAGTATCGTAATTCTTCCATCTG
TCGAAAGAAATCCATCCAGTTGAGATTTTTCACTTAGATTTCCGTCCCAA
TAGCACACGAATCTAAAAGTAGTAACAAATCTGCATAACTATTTGTTTGT
ATAACTTGCGATCTCGTCCTCCTTTGCGTTAACTGCTCTTGCACATTAGT
CAATTACAATATTAGAGGTAATAACTTTCATGGTTTTACAATCATTTCAA
AATGAACTGTGGGATTGGAACTCTACAAATTTctagttgaaataattatg
acgtGTTAGATACGAAGGGCTATTGCAAGCCTTTGAAGCTTTCGTCTAAT
TTTGAACCTTCTATCCAGAAAACCAAAATAGTTGCGAAACTGGTACTTGA
TTTAAAATCCTATTTATCACTTTGTTATTACCAGGTCAAGAAGATTACGA
TCGTCTCAGGCCGTTATCATACCCACAAACAGATGTTTTCTTAGTCTGCT
TCTCTGTTGTCGCCCCTGCATCATTCGAAAACGTAAAAGAAAAGGTACGT
TTTACTAGTTTAAGATCTATTGTGATATTTTTAACTTATGATCCTCAAAT
GTTTCTGTGTTGTTCCATAATGAGCAACCaagaaagaatttcaaaaattg
aataatcGCTCTAACAGGCCATTGGTTACTGCCCACTTAGTGTGAAATAG
TTTTAAATTCTTGATAATTCCCAAAAAGTAATTGATTTTATAacaagttt
ttcttttcttttcagtgGGTTCCAGAAATTACACATCATTGTCCTAAAAC
ACCATTTTTACTAGTCGGTACACAAGTCGATTTACGAGATGATGCCGCCA
TCGTTGAAAAACTCGCCAAAACGAAACAAAAGCCAATCTCTTTCGAACAA
GGAGAAAAATTAGCACGAGAATTGAAAGCAGTAAAATATGTCGAATGCTC
CGCTTTAACGCAAAAAGGATTAAAGAACGTTTTTGACGAAGCCATTTTGG
CTGCATTGGAGCCCCCAGAGcaaccaaagaaaaagaaatgtgtTTTACTC
TAACTttggttaaaaaattaattttttgttgaaacGACCTTAATATAAAA
ATTCCACTCGCTTCCGTCGATCAATAATGCACACTGCGCTTATCGATAGA
GAGAATCTGCCAGTGGAATGAATTGTACAGCTTTGCTTATATGCCAAGAG
AGGTGAATTCATCATAACATAAAAGTGTGGAATACCTTTCAAAGGTTTTG
CGAGGGAAACTGTTCATTGTATCGTTAAAAACCAACATCAAAATAAACCT
CTATTTtatagtttaaaaaaaagtttagaaacataaAATTAAATGAATTA
AAATATTGTTACCCAGGTTTTTTCTATAAATTAAGGGCTGGGTTTATGTA
CTATATCTGGATATGCAACTTTTTTTGTATGTATTCTTATGTACCTCTTT
CGAAAAAATAGTAATTTTTAAGACTTCTCATAATGAATGCCCTGATTGAG
CTCAAttcaacttttaatttttttgtttatttattgtgCTGATTTTTTTC
CTTCGTTGCTTTTCAGGGGATATTCATTTTTGTTTCAATCACTCAAAcga
ttttttaaatatggcCAAAGTCTTCAGTTTTTATTCTTTGCTCAATCAGG
GTGTACACCGAGAAACTATGTCACATTTTTTATAGTTGATTTCTCATGAA
TGAATTATGGGACCAACCCCCTtctatattttgttttaaaagaaaactaa
aTTGGCCACACGATTTGTACTTATCTATCTGATTTTATACTTGTGAAAAT
ATCAACTGTCTAGAACTTTAAACACATCTTGCTCAGATTTGTTCTTCTTT
TAAGAAATATCAGGGCAGAGTTCCAAATTATATACTTGTCAACTTATCAA
AACTATTCAAATCGTTTATCTTGTATAATGTTCGTCAGCAAATAGATTGT
TAGTTTTGACTCTTTTTGACTATTTTGATTTTGTAGGATTATAAACTATA
TTTTTTTCGTCCCCTATGTGTTgtctgtatttttgaaaaacaatgttCAA
TATacagacaatttaaaaaatttgcctGTAATTTACTTCAATACTTCATG
TCCTCCTTTATCTCCATCCCCTTCTTGTCCGAAGGAACTTTACAATTCTT
AATAACCGAGTTCCAAAAGCGAAGTGGAtcatgtggtgtgtttggggcat
taaggctcttacgaacCTGTCTCCATAGCGGCTTttttattagagggatt
tttagagtgtctcttattttgctagcaacttgcgaattgaggtggagtct
agatcgcttcgcaacccttatacaatacggctagtagTG

Coding sequence (CDS) from alignment at sc0000011:4393..18431+

>TCONS_00001557 ID=TCONS_00001557|Name=TCONS_00001557|organism=Clytia hemisphaerica|type=CDS|length=3345bp|location=Sequence derived from alignment at sc0000011:4393..18431+ (Clytia hemisphaerica)
GACTCAAACCACCGCCCGTTCACTGAGCGAAGGAATACATTTTTTGGTAT
TGTGGATGCAGTGCCCAAGAATTTCAGTAAACTAAATAATAAAATGCAGA
CCATCAAATGCGTGGTCGTTGGTGATGGTGCCGTAGGAAAAACCTGTTTA
CTGATTTCTTATACAACAAATAAATTCCCCAGTGAATATGTACCGACAGT
ATTTGACAACTATGCTGTAACGGTCATGATAGGAGGAGAACCATATACGT
TAGGTCTCTTCGATACAGCTGGTCAAGAAGATTACGATCGTCTCAGGCCG
TTATCATACCCACAAACAGATGTTTTCTTAGTCTGCTTCTCTGTTGTCGC
CCCTGCATCATTCGAAAACGTAAAAGAAAAGtgGGTTCCAGAAATTACAC
ATCATTGTCCTAAAACACCATTTTTACTAGTCGGTACACAAGTCGATTTA
CGAGATGATGCCGCCATCGTTGAAAAACTCGCCAAAACGAAACAAAAGCC
AATCTCTTTCGAACAAGGAGAAAAATTAGCACGAGAATTGAAAGCAGTAA
AATATGTCGAATGCTCCGCTTTAACGCAAAAAGGATTAAAGAACGTTTTT
GACGAAGCCATTTTGGCTGCATTGGAGCCCCCAGAGcaaccaaagaaaaa
gaaatgtgtTTTACTCTAAGACTCAAACCACCGCCCGTTCACTGAGCGAA
GGAATACATTTTTTGGTATTGTGGATGCAGTGCCCAAGAATTTCAGTAAA
CTAAATAATAAAATGCAGACCATCAAATGCGTGGTCGTTGGTGATGGTGC
CGTAGGAAAAACCTGTTTACTGATTTCTTATACAACAAATAAATTCCCCA
GTGAATATGTACCGACAGTATTTGACAACTATGCTGTAACGGTCATGATA
GGAGGAGAACCATATACGTTAGGTCTCTTCGATACAGCTGGTCAAGAAGA
TTACGATCGTCTCAGGCCGTTATCATACCCACAAACAGATGTTTTCTTAG
TCTGCTTCTCTGTTGTCGCCCCTGCATCATTCGAAAACGTAAAAGAAAAG
tgGGTTCCAGAAATTACACATCATTGTCCTAAAACACCATTTTTACTAGT
CGGTACACAAGTCGATTTACGAGATGATGCCGCCATCGTTGAAAAACTCG
CCAAAACGAAACAAAAGCCAATCTCTTTCGAACAAGGAGAAAAATTAGCA
CGAGAATTGAAAGCAGTAAAATATGTCGAATGCTCCGCTTTAACGCAAAA
AGGATTAAAGAACGTTTTTGACGAAGCCATTTTGGCTGCATTGGAGCCCC
CAGAGcaaccaaagaaaaagaaatgtgtTTTACTCTAAGACTCAAACCAC
CGCCCGTTCACTGAGCGAAGGAATACATTTTTTGGTATTGTGGATGCAGT
GCCCAAGAATTTCAGTAAACTAAATAATAAAATGCAGACCATCAAATGCG
TGGTCGTTGGTGATGGTGCCGTAGGAAAAACCTGTTTACTGATTTCTTAT
ACAACAAATAAATTCCCCAGTGAATATGTACCGACAGTATTTGACAACTA
TGCTGTAACGGTCATGATAGGAGGAGAACCATATACGTTAGGTCTCTTCG
ATACAGCTGGTCAAGAAGATTACGATCGTCTCAGGCCGTTATCATACCCA
CAAACAGATGTTTTCTTAGTCTGCTTCTCTGTTGTCGCCCCTGCATCATT
CGAAAACGTAAAAGAAAAGtgGGTTCCAGAAATTACACATCATTGTCCTA
AAACACCATTTTTACTAGTCGGTACACAAGTCGATTTACGAGATGATGCC
GCCATCGTTGAAAAACTCGCCAAAACGAAACAAAAGCCAATCTCTTTCGA
ACAAGGAGAAAAATTAGCACGAGAATTGAAAGCAGTAAAATATGTCGAAT
GCTCCGCTTTAACGCAAAAAGGATTAAAGAACGTTTTTGACGAAGCCATT
TTGGCTGCATTGGAGCCCCCAGAGcaaccaaagaaaaagaaatgtgtTTT
ACTCTAAGACTCAAACCACCGCCCGTTCACTGAGCGAAGGAATACATTTT
TTGGTATTGTGGATGCAGTGCCCAAGAATTTCAGTAAACTAAATAATAAA
ATGCAGACCATCAAATGCGTGGTCGTTGGTGATGGTGCCGTAGGAAAAAC
CTGTTTACTGATTTCTTATACAACAAATAAATTCCCCAGTGAATATGTAC
CGACAGTATTTGACAACTATGCTGTAACGGTCATGATAGGAGGAGAACCA
TATACGTTAGGTCTCTTCGATACAGCTGGTCAAGAAGATTACGATCGTCT
CAGGCCGTTATCATACCCACAAACAGATGTTTTCTTAGTCTGCTTCTCTG
TTGTCGCCCCTGCATCATTCGAAAACGTAAAAGAAAAGtgGGTTCCAGAA
ATTACACATCATTGTCCTAAAACACCATTTTTACTAGTCGGTACACAAGT
CGATTTACGAGATGATGCCGCCATCGTTGAAAAACTCGCCAAAACGAAAC
AAAAGCCAATCTCTTTCGAACAAGGAGAAAAATTAGCACGAGAATTGAAA
GCAGTAAAATATGTCGAATGCTCCGCTTTAACGCAAAAAGGATTAAAGAA
CGTTTTTGACGAAGCCATTTTGGCTGCATTGGAGCCCCCAGAGcaaccaa
agaaaaagaaatgtgtTTTACTCTAAGACTCAAACCACCGCCCGTTCACT
GAGCGAAGGAATACATTTTTTGGTATTGTGGATGCAGTGCCCAAGAATTT
CAGTAAACTAAATAATAAAATGCAGACCATCAAATGCGTGGTCGTTGGTG
ATGGTGCCGTAGGAAAAACCTGTTTACTGATTTCTTATACAACAAATAAA
TTCCCCAGTGAATATGTACCGACAGTATTTGACAACTATGCTGTAACGGT
CATGATAGGAGGAGAACCATATACGTTAGGTCTCTTCGATACAGCTGGTC
AAGAAGATTACGATCGTCTCAGGCCGTTATCATACCCACAAACAGATGTT
TTCTTAGTCTGCTTCTCTGTTGTCGCCCCTGCATCATTCGAAAACGTAAA
AGAAAAGtgGGTTCCAGAAATTACACATCATTGTCCTAAAACACCATTTT
TACTAGTCGGTACACAAGTCGATTTACGAGATGATGCCGCCATCGTTGAA
AAACTCGCCAAAACGAAACAAAAGCCAATCTCTTTCGAACAAGGAGAAAA
ATTAGCACGAGAATTGAAAGCAGTAAAATATGTCGAATGCTCCGCTTTAA
CGCAAAAAGGATTAAAGAACGTTTTTGACGAAGCCATTTTGGCTGCATTG
GAGCCCCCAGAGcaaccaaagaaaaagaaatgtgtTTTACTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000816XLOC_000816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001557-exon-sc0000011-1491911889:4393..4463TCONS_00001557-exon-sc0000011-1491911889:4393..4463Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1510915933:4393..4463TCONS_00001557-exon-sc0000011-1510915933:4393..4463Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1575043694:4393..4463TCONS_00001557-exon-sc0000011-1575043694:4393..4463Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1491911889:15677..15805TCONS_00001557-exon-sc0000011-1491911889:15677..15805Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1510915933:15677..15805TCONS_00001557-exon-sc0000011-1510915933:15677..15805Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1575043694:15677..15805TCONS_00001557-exon-sc0000011-1575043694:15677..15805Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1491911889:15922..15994TCONS_00001557-exon-sc0000011-1491911889:15922..15994Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1510915933:15922..15994TCONS_00001557-exon-sc0000011-1510915933:15922..15994Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1575043694:15922..15994TCONS_00001557-exon-sc0000011-1575043694:15922..15994Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1491911889:16527..16636TCONS_00001557-exon-sc0000011-1491911889:16527..16636Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1510915933:16527..16636TCONS_00001557-exon-sc0000011-1510915933:16527..16636Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1575043694:16527..16636TCONS_00001557-exon-sc0000011-1575043694:16527..16636Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1491911889:16858..18431TCONS_00001557-exon-sc0000011-1491911889:16858..18431Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1510915933:16858..18431TCONS_00001557-exon-sc0000011-1510915933:16858..18431Clytia hemisphaericaexon
TCONS_00001557-exon-sc0000011-1575043694:16858..18431TCONS_00001557-exon-sc0000011-1575043694:16858..18431Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001557-proteinTCONS_00001557-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:4393..18431 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
326.594	331.834	388.596	381.286	303.019	218.562	321.918	330.774	270.949	306.831	322.722	256.478	310.321	330.055	308.067	292.434	335.851	359.056	362.886	307.361	469.747	460.062	348.547	352.362	187.443	225.818	342.079	302.377	277.517	276.365
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00001557 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 4.261e-117
Identity = 168/181 (92.82%), Postives = 175/181 (96.69%), Query Frame = 3 
Query:   96 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVKEKWVPEITHHCPKTPFLLVGTQVDLRDDAAIVEKLAKTKQKPISFEQGEKLARELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 638
            MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV+P+SFENVKEKWVPEITHHCPKTPFLLVGTQ+DLRDD + +EKLAK KQKPI+ E  EKLAR+LKAVKYVECSALTQKGLKNVFDEAILAALEPPE
Sbjct:    1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
The following BLAST results are available for this feature:
BLAST of TCONS_00001557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC424.261e-11792.82Cell division control protein 42 homolog OS=Homo s... [more]
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