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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001553 ID=TCONS_00001553|Name=TCONS_00001553|organism=Clytia hemisphaerica|type=transcript|length=1210bp
CTTGTATTGTATAGGAACAAGCACGTATGTAAAATGCGTATAACTTGTCC
TTTGACCTGTTAAAAATACTTGAAGTATCCTGATAAAATTGGTGTTTGTT
TTTAACAAGTTTTAAAGTGTTAAATCCtattgaaaatatttactttcaaa
ctttctaTTAAAGtggaaatgtttttgttttgaattagaACAGTAAGAGA
TCCAACTAAGGAGAAACATGGACACAGAAATGATACtactttcattttaa
tttaaatatatcatcaaaattttgaacgTTTGAGCACATAGAGTCTTTGA
TCAATTTCATTAGTAGTTTAAAAAGTACGGACTATAGTTTGGATAAATGG
TGAGCTTCTACTACTATATGCAAAAAAGCGACATTTACTGAATACTTGAA
AGAGAAAGCATTGACAATATTTGCTGCAGACATGAATTATCCTTCAGAGC
TGATTCTACCGTTCTGTCTCTTGATCATGCTAATTGTATTATACATAGCT
CAAAAACTTTTTGGATGTTCCTGCTTTAAGAAACCCAATAATAATAGAGA
TTTAGTTGGTGAAAATTACAGAGACCATTACGGGTTGATTTTAGAAGAAA
GTAGAAGTTTCAACAATGATTCATCTAAAGACAGCTATCTGGCAAGATTT
GATTTCGGTTGTTGCTTTTTCTTAATCACAAATAAACTACATTCTGCTTC
ACTTATGTATATACCGCATGCGGATAAGTTTGAATACGGAACTGTTGATA
TTACAGGCGAGCCAAACAATCATACATCAAAACATAGTATAAATGACGTT
TGCCCTATATGTTTCGAGACATttacaataaaacaaaagattgtGCTACT
AGACTGTCAACACGCTTTCCATTCTACCTGTATAGCTAAGTGGTtaaaaa
agtgtgtaaagaAACATAAAGGGACTTGTCCGCTATGTAAAGATTTTATT
GATACAGAAATCGTATATACAAATTGTGAAGATGGAGCCTACGCATTTGA
CGTCCTTAGTACGTACAGTTCACATTCAGACTATGGCCAACAAAGAACAA
GAGAATCTTATGCACTGGGCTTTGCGAATGTATGATGACTATTGCCAAAG
TAAAGTATGTGGCAAATAACTGGATATCCAAAGATTTATTACTTTAATTC
AAATtgtgaaatttagaaatttattcTTTAACAGAAATGTTCTTTTTACA
CCGATAATAA Run BLAST on NCBI protein sequence of TCONS_00001553-protein >TCONS_00001553-protein ID=TCONS_00001553-protein|Name=TCONS_00001553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MNYPSELILPFCLLIMLIVLYIAQKLFGCSCFKKPNNNRDLVGENYRDHY
GLILEESRSFNNDSSKDSYLARFDFGCCFFLITNKLHSASLMYIPHADKF
EYGTVDITGEPNNHTSKHSINDVCPICFETFTIKQKIVLLDCQHAFHSTC
IAKWLKKCVKKHKGTCPLCKDFIDTEIVYTNCEDGAYAFDVLSTYSSHSD
YGQQRTRESYALGFANV Run BLAST on NCBI transcript from alignment at sc0000010:1063199..1064408 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001553 ID=TCONS_00001553|Name=TCONS_00001553|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at sc0000010:1063199..1064408 (Clytia hemisphaerica)
TTATTATCGGTGTAAAAAGAACATTTCTGTTAAAgaataaatttctaaat
ttcacaATTTGAATTAAAGTAATAAATCTTTGGATATCCAGTTATTTGCC
ACATACTTTACTTTGGCAATAGTCATCATACATTCGCAAAGCCCAGTGCA
TAAGATTCTCTTGTTCTTTGTTGGCCATAGTCTGAATGTGAACTGTACGT
ACTAAGGACGTCAAATGCGTAGGCTCCATCTTCACAATTTGTATATACGA
TTTCTGTATCAATAAAATCTTTACATAGCGGACAAGTCCCTTTATGTTtc
tttacacacttttttaACCACTTAGCTATACAGGTAGAATGGAAAGCGTG
TTGACAGTCTAGTAGCacaatcttttgttttattgtaaATGTCTCGAAAC
ATATAGGGCAAACGTCATTTATACTATGTTTTGATGTATGATTGTTTGGC
TCGCCTGTAATATCAACAGTTCCGTATTCAAACTTATCCGCATGCGGTAT
ATACATAAGTGAAGCAGAATGTAGTTTATTTGTGATTAAGAAAAAGCAAC
AACCGAAATCAAATCTTGCCAGATAGCTGTCTTTAGATGAATCATTGTTG
AAACTTCTACTTTCTTCTAAAATCAACCCGTAATGGTCTCTGTAATTTTC
ACCAACTAAATCTCTATTATTATTGGGTTTCTTAAAGCAGGAACATCCAA
AAAGTTTTTGAGCTATGTATAATACAATTAGCATGATCAAGAGACAGAAC
GGTAGAATCAGCTCTGAAGGATAATTCATGTCTGCAGCAAATATTGTCAA
TGCTTTCTCTTTCAAGTATTCAGTAAATGTCGCTTTTTTGCATATAGTAG
TAGAAGCTCACCATTTATCCAAACTATAGTCCGTACTTTTTAAACTACTA
ATGAAATTGATCAAAGACTCTATGTGCTCAAAcgttcaaaattttgatga
tatatttaaattaaaatgaaagtaGTATCATTTCTGTGTCCATGTTTCTC
CTTAGTTGGATCTCTTACTGTtctaattcaaaacaaaaacatttccaCTT
TAAtagaaagtttgaaagtaaatattttcaataGGATTTAACACTTTAAA
ACTTGTTAAAAACAAACACCAATTTTATCAGGATACTTCAAGTATTTTTA
ACAGGTCAAAGGACAAGTTATACGCATTTTACATACGTGCTTGTTCCTAT
ACAATACAAG Coding sequence (CDS) from alignment at sc0000010:1063199..1064408 >TCONS_00001553 ID=TCONS_00001553|Name=TCONS_00001553|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000010:1063199..1064408 (Clytia hemisphaerica)
TCATACATTCGCAAAGCCCAGTGCATAAGATTCTCTTGTTCTTTGTTGGC
CATAGTCTGAATGTGAACTGTACGTACTAAGGACGTCAAATGCGTAGGCT
CCATCTTCACAATTTGTATATACGATTTCTGTATCAATAAAATCTTTACA
TAGCGGACAAGTCCCTTTATGTTtctttacacacttttttaACCACTTAG
CTATACAGGTAGAATGGAAAGCGTGTTGACAGTCTAGTAGCacaatcttt
tgttttattgtaaATGTCTCGAAACATATAGGGCAAACGTCATTTATACT
ATGTTTTGATGTATGATTGTTTGGCTCGCCTGTAATATCAACAGTTCCGT
ATTCAAACTTATCCGCATGCGGTATATACATAAGTGAAGCAGAATGTAGT
TTATTTGTGATTAAGAAAAAGCAACAACCGAAATCAAATCTTGCCAGATA
GCTGTCTTTAGATGAATCATTGTTGAAACTTCTACTTTCTTCTAAAATCA
ACCCGTAATGGTCTCTGTAATTTTCACCAACTAAATCTCTATTATTATTG
GGTTTCTTAAAGCAGGAACATCCAAAAAGTTTTTGAGCTATGTATAATAC
AATTAGCATGATCAAGAGACAGAACGGTAGAATCAGCTCTGAAGGATAAT
TCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001553-exon-sc0000010-1491911889:1063199..1064408 | TCONS_00001553-exon-sc0000010-1491911889:1063199..1064408 | Clytia hemisphaerica | exon |
| TCONS_00001553-exon-sc0000010-1510915933:1063199..1064408 | TCONS_00001553-exon-sc0000010-1510915933:1063199..1064408 | Clytia hemisphaerica | exon |
| TCONS_00001553-exon-sc0000010-1575043694:1063199..1064408 | TCONS_00001553-exon-sc0000010-1575043694:1063199..1064408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:1063199..1064408 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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