TCONS_00001549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001549
Unique NameTCONS_00001549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001549 ID=TCONS_00001549|Name=TCONS_00001549|organism=Clytia hemisphaerica|type=transcript|length=678bp
TACATACAGTATATATCAATCGGCTCCCCAATCAGCCTTCAAATGAGTTG
GCCCCACTTGTCTTAACTTTGTGTTTAACACACTCATGGCTCTTATAATG
TCGATGCACATTCGACAACACACTGTTTCCCTCGTTATGTTTGCTCAATT
TGATCTCTCGCTGACAATTCAAGCACTGGAAGTGTTTTATTCCATCCTCT
GTCTCAGTGATTGAATAAATCTCTTTGTATCCATTTTTCTGCATCCATTT
ATCAAGTCTATGAACAATCATTTCTATCGTTTCTTCGGTTTGTTTCCTTC
TCTTTGGAGTGGAGGCTGTGCCCGAGAGTTCTTTCCTCTTCCCTTTATTG
ACGTTGATTGCGTCAGCTCTTTTTCTAAGTAAGAGTTTCTCACATTCTTC
TAAGAAAGTAGTAAATATCGTTTCATGGCCTGGCAAAACTTGAACTTTCT
CTGGACATTGTTCAAACATCCCAAACATCTTTTCTCTATCGTCTACTTGG
TCTATCATGTCCACCGCGAACTGAAACATTTCTCGTCTTTTATCTTTATC
TCTTAATTCTAGAATGGCATTTAAATCGTTGAAACCGGCAAATTTCATTA
TCTCGAAAACATACTGTCCCCGTTCGGGTAATATTCGCCATAACTTTTCT
GGAACAGCAATTTTGTTACATTTAGCTA
Run BLAST on NCBI

protein sequence of TCONS_00001549-protein

>TCONS_00001549-protein ID=TCONS_00001549-protein|Name=TCONS_00001549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
AKCNKIAVPEKLWRILPERGQYVFEIMKFAGFNDLNAILELRDKDKRREM
FQFAVDMIDQVDDREKMFGMFEQCPEKVQVLPGHETIFTTFLEECEKLLL
RKRADAINVNKGKRKELSGTASTPKRRKQTEETIEMIVHRLDKWMQKNGY
KEIYSITETEDGIKHFQCLNCQREIKLSKHNEGNSVLSNVHRHYKSHECV
KHKVKTSGANSFEG
Run BLAST on NCBI

transcript from alignment at sc0000010:987842..988519

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001549 ID=TCONS_00001549|Name=TCONS_00001549|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0000010:987842..988519 (Clytia hemisphaerica)
TAGCTAAATGTAACAAAATTGCTGTTCCAGAAAAGTTATGGCGAATATTA
CCCGAACGGGGACAGTATGTTTTCGAGATAATGAAATTTGCCGGTTTCAA
CGATTTAAATGCCATTCTAGAATTAAGAGATAAAGATAAAAGACGAGAAA
TGTTTCAGTTCGCGGTGGACATGATAGACCAAGTAGACGATAGAGAAAAG
ATGTTTGGGATGTTTGAACAATGTCCAGAGAAAGTTCAAGTTTTGCCAGG
CCATGAAACGATATTTACTACTTTCTTAGAAGAATGTGAGAAACTCTTAC
TTAGAAAAAGAGCTGACGCAATCAACGTCAATAAAGGGAAGAGGAAAGAA
CTCTCGGGCACAGCCTCCACTCCAAAGAGAAGGAAACAAACCGAAGAAAC
GATAGAAATGATTGTTCATAGACTTGATAAATGGATGCAGAAAAATGGAT
ACAAAGAGATTTATTCAATCACTGAGACAGAGGATGGAATAAAACACTTC
CAGTGCTTGAATTGTCAGCGAGAGATCAAATTGAGCAAACATAACGAGGG
AAACAGTGTGTTGTCGAATGTGCATCGACATTATAAGAGCCATGAGTGTG
TTAAACACAAAGTTAAGACAAGTGGGGCCAACTCATTTGAAGGCTGATTG
GGGAGCCGATTGATATATACTGTATGTA

Coding sequence (CDS) from alignment at sc0000010:987842..988519

>TCONS_00001549 ID=TCONS_00001549|Name=TCONS_00001549|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000010:987842..988519 (Clytia hemisphaerica)
GCTAAATGTAACAAAATTGCTGTTCCAGAAAAGTTATGGCGAATATTACC
CGAACGGGGACAGTATGTTTTCGAGATAATGAAATTTGCCGGTTTCAACG
ATTTAAATGCCATTCTAGAATTAAGAGATAAAGATAAAAGACGAGAAATG
TTTCAGTTCGCGGTGGACATGATAGACCAAGTAGACGATAGAGAAAAGAT
GTTTGGGATGTTTGAACAATGTCCAGAGAAAGTTCAAGTTTTGCCAGGCC
ATGAAACGATATTTACTACTTTCTTAGAAGAATGTGAGAAACTCTTACTT
AGAAAAAGAGCTGACGCAATCAACGTCAATAAAGGGAAGAGGAAAGAACT
CTCGGGCACAGCCTCCACTCCAAAGAGAAGGAAACAAACCGAAGAAACGA
TAGAAATGATTGTTCATAGACTTGATAAATGGATGCAGAAAAATGGATAC
AAAGAGATTTATTCAATCACTGAGACAGAGGATGGAATAAAACACTTCCA
GTGCTTGAATTGTCAGCGAGAGATCAAATTGAGCAAACATAACGAGGGAA
ACAGTGTGTTGTCGAATGTGCATCGACATTATAAGAGCCATGAGTGTGTT
AAACACAAAGTTAAGACAAGTGGGGCCAACTCATTTGAAGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000808XLOC_000808Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001549-proteinTCONS_00001549-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001549-exon-sc0000010-1491911889:987842..988519TCONS_00001549-exon-sc0000010-1491911889:987842..988519Clytia hemisphaericaexon
TCONS_00001549-exon-sc0000010-1510915933:987842..988519TCONS_00001549-exon-sc0000010-1510915933:987842..988519Clytia hemisphaericaexon
TCONS_00001549-exon-sc0000010-1575043694:987842..988519TCONS_00001549-exon-sc0000010-1575043694:987842..988519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:987842..988519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.151291	0.147533	1.3704	1.50831	0.714085	0.967337	8.75288	9.10482	2.67729	2.2898	5.13482	2.41822	4.62847	4.70222	2.87792	2.02823	3.0097	3.20125	6.19179	3.87073	3.29123	3.42474	1.56121	1.49822	3.32991	3.47925	5.28998	1.77117	2.7707	3.16508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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